{ "cells": [ { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import pandas as pd\n", "import cobra\n", "from cobra import Reaction, Metabolite" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Theoretical Yield Calculations with iML1515 model with added oleochemical reactions / metabolites. " ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | Reverse Beta Oxidation | \n", "Thioesterase (ΔfadAI) | \n", "PhaG PhaJ ΔfadDEK | \n", "PhaG PhaJ tdTER BktB ΔfadBDK | \n", "
---|---|---|---|---|
Octanol | \n", "0.291667 | \n", "0.267797 | \n", "0.270548 | \n", "0.276224 | \n", "
Decanol | \n", "0.233333 | \n", "0.215259 | \n", "0.217033 | \n", "0.22067 | \n", "
Dodecanol | \n", "0.194444 | \n", "0.179954 | \n", "0.181193 | \n", "0.183721 | \n", "
Tetradecanol | \n", "0.166667 | \n", "0.154599 | \n", "0.155512 | \n", "0.157371 | \n", "
2-Heptanone | \n", "0.334746 | \n", "0.30038 | \n", "0.311024 | \n", "0.318548 | \n", "
2-Nonanone | \n", "0.261589 | \n", "0.235821 | \n", "0.242331 | \n", "0.246875 | \n", "
2-Undecanone | \n", "0.214674 | \n", "0.194103 | \n", "0.198492 | \n", "0.201531 | \n", "
2-Tridecanone | \n", "0.182028 | \n", "0.164927 | \n", "0.168085 | \n", "0.170259 | \n", "
Octanoic Acid | \n", "0.314741 | \n", "0.29368 | \n", "0.287273 | \n", "0.29368 | \n", "
Decanoic Acid | \n", "0.249097 | \n", "0.231672 | \n", "0.227666 | \n", "0.231672 | \n", "
Dodecanoic Acid | \n", "0.205882 | \n", "0.191283 | \n", "0.188544 | \n", "0.191283 | \n", "
Tetradecanoic Acid | \n", "0.175 | \n", "0.162887 | \n", "0.160896 | \n", "0.162887 | \n", "