Supplementary table 2J - Marker genes identified for the B cells/Oligodendrocyte cluster obtained after subsetting (resolution = 0.3) B cells/Oligodendrocyte Marker genes Cluster 0 Cluster 1 Cluster 2 Cluster 3 Cluster 4 Jchain Ptn Pdgfra 2900040C04Rik Snhg11 Cell cluster Final cell IDs: Igkc Dbi Gria2 Cox8b Miat Cluster 0 Sdc1+ Ighm+ plasma cells Ighm Ptprz1 Serpine2 Cga Phf24 Cluster 1 Olig1+ Oligodendrocytes Rps24 S100a1 Ptprz1 1500015O10Rik Grin2b Cluster 2 Olig1+ Oligodendrocytes Gm10076 Fos Ptn Calml4 Syt1 Cluster 3 Epcam+ neuroepithelium Mzb1 Jun Vcan Rdh5 Ank3 Cluster 4 Map2+ Neurons Cd74 Actb Epn2 Cck Cacna1b Rps8 Tuba1a Ppfibp1 Igfbp2 Atp11b B2m Marcks Eps8 Apoc3 Unc13a Iglc2 Cspg5 Qk Resp18 Rnf112 Iglc3 Ckb Syt11 Ptgds Meg3 Rps20 Olig1 Brinp3 Chga Rbfox3 Rps29 Egr1 Pcdh10 mt-Nd4 L1cam Rpl17 Pcsk1n Cntn1 Rab26os Gria2 Rpl23 Pllp Apoe Pitx1 B230323A14Rik Ly6c2 Nrxn1 Bcan Ttr Pclo Rplp1 Zcchc24 Rnf144a mt-Co3 Mirg Rpl10 Lhfpl3 Marcks Tshb Gabra2 Rps10 Sox10 Gpm6b Aldh2 Dbn1 Sec61b Pdgfra Ptprn mt-Co1 Kcnt1 Rpl32 Gpr17 Olig1 mt-Cytb Slc12a5 Txndc5 S100b Nrxn1 mt-Co2 Syt7 Rpl22 Tmem100 Sep-08 mt-Atp6 Dgkh Rplp0 Sparcl1 Atp1a2 Igfbp5 Inpp4a Rpl12 Ccnd1 Luzp2 Scg2 Mical3 Rps15a Olig2 Arhgap31 Chgb Tnk2 Xbp1 Qk Cav1 Epcam Snap25 Srgn Scrg1 Igsf9b mt-Nd1 Med12l Trp53inp1 Fabp7 Khdrbs3 Fxyd1 Mical2 Rpl36al Serpine2 Ramp1 Ctnna1 Pcnx2 Rpl35 S100a16 Aplp2 Cab39l Celsr3 Rps14 Apoe Tnr Fth1 Sv2b Serp1 Syt11 Xist Rorb Faap100 Sec11c Basp1 Slc4a4 Scamp3 Mapk11 Rps19 Nr4a1 Olfm2 Cox20 Lmln Tpt1 Junb Jun Enpp2 Tspoap1 Rpl18a Tsc22d1 Ncald Mt3 mt-Co3 Rps7 Tpm1 Zcchc24 Atf3 Ndrg4 Rpsa Epn2 Itgb8 mt-Nd5 Dopey1 H2-K1 Rtn1 Grin3a Cldn7 Aak1 Rpl35a Tspan3 Caskin2 Cox8a C2cd5 Rpl34 Slc1a2 Mecp2 Tuba1b Camk2b Rps4x Mt3 Plxnb1 Cfap36 mt-Atp6 Rps27 Gpm6b Pcdh17 Bola3 Map1b Rpl38 Nap1l5 Cacng4 Arl6ip1 Ids Pim1 Sulf2 Iglon5 Brd1 Mir124a-1hg Fau Tox3 Clk4 Dstn mt-Co1 Rps18 Slc6a1 Rlbp1 Cystm1 AC149090.1 Rpl26 Atp1a2 3632451O06Rik Mtch1 Scap Herpud1 Qpct Cspg4 mt-Nd4l Cpeb1 Rps16 Xylt1 Npas3 Higd1a Ptprs Uba52 Bcan Hnrnpa2b1 Hspa4l Kalrn Rps3 Cntn1 Lhfpl3 Pcp4 Kcnq2 Rps3a1 Tnr Lsamp Snrpn Stam Rps12 Spry2 Tsc22d1 mt-Nd6 Kif21a Rps28 Abhd2 Gpr37l1 Ldhb Dennd6b H2-D1 Gng3 Cacng7 mt-Nd2 Kifc2 Rps5 Nfia Lbh Cst3 Rbfox2 Rpl37a Ctnnd2 Ampd3 Actr8 Sirpa Rpl36a Actg1 Myo10 Prdx6 Fbxo18 Rpl28 Sdc3 Nsg1 Map1lc3a mt-Co2 Rpl29 Matn4 Cadm2 Nfe2l1 Arhgef17 Rpl9 Gjc3 Cspg5 Gpx4 mt-Nd1 H2-Q7 Tril Opcml Sh3bgrl3 Pfkp Ly6a Bex2 Bmpr2 Ccdc186 Pitpnm3 Rpl27a Neu4 Gatm Sat1 Dnm1 Serinc3 Sep-07 Olig2 Vdac1 Dgkb Rpl14 Hsd17b12 Dag1 Phyh Pgm2l1 Slpi Cacng4 Adgrb3 Atp6v1e1 Limk2 Rps21 C1ql1 Ncam1 Bsg Speg Ifi27l2a Evi5l Gjc3 Ppia Pxdn Ssr4 Nnat Dst Clu Ntng1 Slc3a2 Lrp1 Fermt2 Mrpl33 Begain Rps23 Sox6 Kbtbd11 Atp6v1d Rgs4 Rpl18 Cdo1 Pou3f3 Calm1 Sptbn4 Rps27a Sash1 Dclk1 Hist1h2bc Kcnq1ot1 Rack1 Slc25a4 Lrrtm2 Mrps33 Wsb1 Cd79a Kcnj10 Myt1 Aldoa C4b Rpl36 Ntm Plpp3 Stmn1 Clstn3 Rps13 Gpm6a Lrp1b Tmem191c Rps6 Sox4 Mkln1 Arhgef4 Eef1b2 Tubb2b Cask Camk2a Rpl30 Ddah1 Xylt1 Jakmip1 Cd52 Cnn3 Nfib Rgs7 Rpl41 Pou3f1 Spast Carmil1 Rps9 Jund Mtss1l Madd Rps15 Mtss1l Mark3 Lrig2 Edem1 Ncald Edil3 Trank1 Rplp2 Dpp6 Ccdc88a Npr2 Rps25 Anks1b Clu Matk Rpl8 Plp1 Cdh2 Slc16a11 Rpl39 Slc22a17 Ppp1r9a Elavl2 Iglv1 Cspg4 Fam171b Atp1a3 Cd79b Tubb2a Wasf1 Bin1 Rps26 Eif1b Add1 Fam193b Iglc1 Phactr3 Wdr1 Celf5 Rpl6 G0s2 Jam2 Shank1 Rpl15 S100a13 Epha5 Atp2b2 Rpl3 Gpr37l1 Cipc Nmnat2 Rbm3 Lrrtm2 Cpq Atp9a Mrpl57 Midn Il1rapl1 Mprip Cyba Phlda1 Dner Kif1a H13 Csmd3 Cadm4 Srcin1 Spcs1 Olfm1 Ntm Chka Ly6e Etv1 Gpr17 Dst Fam214a Nrxn2 Tia1 Ogt Ctss Scd2 Klf4 Carf Rpl11 Tsc22d4 Lamp1 Camkk2 Rpl19 Rpl22l1 Aldoc Armc9 Rpl7 Luzp2 Ednrb Plekha6 Cd69 Ntrk2 Ugdh Exd2 Rpl5 Ramp1 Nlgn3 Lhfpl4 Fam46c Pgp Slc6a1 Ccar2 Glipr1 Fez1 Lrp1 Iqsec2 Rpl27 Cryab Wscd1 Plxdc2 Srp9 Pcp4 Macf1 Lin7b Rpl37 Atxn7l3b 3110035E14Rik Atp6v1g2 Rpl21 Gstm5 Lima1 B230334C09Rik Rpl24 Nxph1 Kcnma1 Sez6 Krtcap2 Spon1 Fchsd2 Grin1 Irf4 Phyhipl Ttyh1 Stx1a Rps17 Kcnip3 Phldb1 Prkar1b Rps2 Bcas1 Tnik 3110021N24Rik Ptpn18 Mdk C1ql1 Rasgef1a Sec61g Tceal3 Ddx17 Gpsm1 Ndufa1 Etv5 Spag9 Gria3 Gm30211 Tspyl4 Sh3bp4 Smpd4 Selenos Ptch1 Brd9 Ints1 Map1lc3b Timp3 Cpe Mtcl1 Iglv3 Gatm Marcksl1 Ptpn5 Pou2af1 Slc35f1 Nap1l5 Slc20a1 Derl3 Sox8 Rtn1 Akap8 Rexo2 Fxyd6 Araf Tnrc6c Txn1 Fosb Mir9-3hg Adgrb2 Pdia4 Rlbp1 Nrxn3 Kmt2a Rps11 Nlgn3 Ntrk2 Peg3 Prg2 Cpe Zfp36l1 Atp1b1 Sub1 Hspd1 P4ha1 mt-Nd2 Rpl4 Asrgl1 Rev3l Adgrl1 Rpl23a Nfib Dpp6 Gprasp1 Tmed10 Bex3 Kif2a Ralgapa1 Rpl10a Fermt2 Npc1 Adap1 Rpl7a Ednrb Glul R3hdm1 Rps27l Gm2a Soga3 Lrrc45 Srpr Traf4 Atp2a2 Clip1 Bst2 Cd81 Adcyap1r1 Sncb Pik3cg Mapt Gng3 Unc13b Ost4 Spry1 Kidins220 Zkscan2 Ifitm3 Sirt2 Zeb1 Rmst Eef1a1 Epha5 Klc1 Zfp738 Rpl13a Ncam1 Fos Dgkz Tmem154 Plpp3 Lmo4 Cbarp Eaf2 Cdk2ap1 Plp1 Porcn Chchd10 Cacng7 Snx22 Kif5a Eif3f 3110035E14Rik Stmn3 Usp29 Tnfrsf13b Dad1 Scd2 Rasal2 Ctla4 Rpl13 Susd5 mt-Nd4 Ctsz Pcdh15 Bcas1 Cuedc1 Mef2c Nckap1 Chpt1 Zranb1 Cytip Zfp462 Galnt1 Enah Psme1 Ss18l2 Itm2c Iqce Nfkbia Btg1 Ank3 Bicd1 Emp3 B230209E15Rik Reep3 Ppm1k Igkv17-127 Kifap3 Nrxn2 Prkag2 H2-T23 Ldhb Slc22a17 Dclk1 Slamf7 Fbxo7 Anp32a Cntnap1 H2-Ab1 Dner Ndrg2 Esyt2 Zbp1 Agpat5 Pcdh15 Rasl11b Sp140 Trio Nnat Dhcr24 Clec2d Chmp4b Mmd2 Thy1 Spcs2 Xist Kdm6b Slit2 Pfdn5 Wscd1 Nckap1 Tnik Tram1 Kank1 Arsb Krba1 Cybb Ugdh Pllp Garnl3 Tmem258 Itgb8 Gpm6a Cpsf7 Rpl31 Tomm20 Pcdh9 Dzank1 Ptp4a2 Gm1673 Tspan3 D230025D16Rik Creld2 Cd9 Dlgap1 Nav1 Ckap4 Tspan7 Kif1b St8sia3 Oosp1 Pcsk2 Pid1 Luc7l3 Trf Gng5 Gria3 Ccnt1 Manf Ndrg2 Rcn2 Ddhd2 Spcs3 Atp6v1f Anks1b Ntrk3 Shisa5 Zeb2 Atxn10 Hap1 Blnk Psma7 Apc Ehmt2 Rap1a Ampd3 Srpk2 Ahi1 Psmb8 Sem1 Gfra1 Chd3 Cmah Ubl5 Zmiz1 Kcnma1 Rrbp1 Clu Rtl8a Pan2 Edem2 Atp5g2 Pkn2 Adgrl2 Naca Klf2 Ywhah Atp2b4 H2-Q4 Vezf1 Spry1 Tmem87b Gimap6 Brinp3 Kcnq1ot1 Zfp318 Fkbp2 Klf4 Pura Akap6 Atp5e Atp5h Arhgap32 Uqcrq Lsamp Fam189b Arhgdib Dync1i2 Ppp6r1 2310001H17Rik Tmsb4x Pkn1 Cope Aldoc 2410089E03Rik Prdx4 Arglu1 Setd3 Rilpl2 Adcyap1r1 Rap1gap Txnip Stmn4 Fry Txndc11 Ttc3 Etnk1 Eef1d Cox7a2 Wdfy3 Gm11808 Cebpb Tmem145 Rgs10 Ttyh1 Nrbp2 Abracl Opcml Cacna2d2 H2afj Rab10 Pnisr Derl1 Ccdc88a Disp2 Eef2 Eno1 Gbp6 Trp53i11 Cbx1 Aatk Ighv1-53 Nme1 Tspan17 a Dlgap1 Slmap Gm5914 Dpm3 Rab3c Ccl5 Vcp Ttbk1 Isg20 Ier2 Map4k3 Nars Serf1 Tet2 Ufm1 Dctn4 Dock3 Nsa2 Rap1gap Rundc3a Btf3 Reep5 Lnpep H2-Eb1 Mat2a Mcf2l Tram2 Sh3glb1 Fam57b Cox7a2l Maged1 Fhl1 Tspan13 Snx3 Zfp704 Serf2 Vcan Dlg1 AU020206 Ppib Mir124-2hg Tmed2 Dpysl2 Eno2 Cd24a Smarcd1 Pkd1 Gm42047 Olfm2 Lmtk3 Filip1l Dclk1 Arnt2 Cox6a2 Rab14 Rsrp1 Irf8 Ifi27 Ptprn Ero1lb Zmiz1 Nbea Eif4ebp1 Gm3764 Map2 Serpina3f Nfix Nfasc Eif3h Pcdh17 Samd4 Tspo Rtl8a Zcchc18 Serpina3g Fip1l1 mt-Cytb Hdlbp Hspa8 Trrap Rac2 Arl6ip1 Mum1 Ell2 Aplp2 Xist Hsp90b1 Ndufa4 Atg16l1 Vpreb3 Ndufa13 Dlg2 P4hb Rhob Odf2 Sel1l Tmem167 Cacna2d1 Psmb9 Skp1a Nalcn Gimap5 Snrpd1 Gpld1 Rnase6 Abca2 Ssr3 Rab12 Itga4 Mink1 Syngr2 1700020I14Rik Pou2f2 Arpp21 Bola2 Ank2 Zfp706 Fat3 Ift20 Wdr13 Clic4 Rasgrf1 Lman1 Sec61a2 Ccnd2 Celf4 Prdm1 Rhot2 Dok3 Scn2a Cd274 1700030K09Rik Man1a Pdk1 Plac8 Abhd14b Tmem123 Herc6 Psme2 Ddx17 Lax1 Ints7 Il10 Rapgef5 Eif3c Zfp512b Dnajc3 Wdfy1 Sdf2l1 Pkp4 Gm42418 Dmxl2 Atf5 Adam11 Mrpl54 Zfhx4 Tnfrsf13c Nprl3 Hipk1 Tppp Lgals1 Ccdc39 Nek7 C230004F18Rik Phgdh Eml2 Taf1d Zfp788 Tapbp Dcaf8 Dnajc7 Pigq Pkig Map4k5 Rpn2 Adgrb3 Fcrla Ap3d1 Cacna1s Ywhag Tnfrsf17 Fnbp1l Atf6 Herc1 Cd53 Zmynd11 Sec24a Fnbp4 Ube2j1 Ttc14 Sec61a1 Rbm6 Neat1 Adar Ly6d Slc11a2 Fkbp11 Srrt Ergic1 Macf1 Arid3a Ipo9 Fcgr2b Cers4 Unc93b1 Gpr162 Mia2 Git1 Adk Tardbp Gm5547 Htt Pafah1b3 Rufy2 Gm15987 Ppip5k1 H2-T22 Zfhx2 Dusp5 Nsmf Vamp8 Maged1 Napsa Vezt Larp1b Myt1l Sdc1 Dlgap4 Cycs Trappc3 Nucb1 Luc7l2 Enpp1 Dalrd3 C130026I21Rik Atg2a Tsc22d3 Sfxn3 Sik1 Nrp1 Surf4 Vsnl1 Eef1g Slf1 Mrps34 Wnk2 Tmem248 Acsl6 Manea Nrgn H2-Q6 Rangap1 Polr2j Rnf25 Lars B4galnt1 Ralgps2 Trp53bp1 Man2a1 Slc2a3 Pls1 Gm45159 Prr5 Fam229b 1110008P14Rik Msrb2 Lman2 Dhx57 Tapbpl Slc4a10 Mvb12a Tef 4930523C07Rik Scg2 Gm34215 Fbxo21 Ccrl2 Arhgap44 Gm4070 Paxbp1 Ptprc Grik5 Fli1 Scn2b Cflar Smc5 Ucp2 Syt4 Hist1h2ap Med25 Erp44 Zmym2 Lgals3bp Scamp1 Sdc4 Ubp1 Adgre5 Gaa Cdk2ap2 Arfgef3 Tap1 Camta1 Lars2 Srrm2 Kdelr2 Hnrnph1 Rp9 Zcchc7 Itgal Cadps AW112010 Ubr3 Prkcd Tia1 Pck2 Dlg4 Stard5 Ndrg3 Asns Mllt6 Rpl10-ps3 App Prlr Slc25a36 Laptm5 Tmem108 Trib1 Camta2 Pon2 Thap4 Myl12a Acaca Elf1 Ptpn23 Cd44 Btrc Las1l Nbeal1 Tmem160 Mboat7 Ube2m Nrp2 Lgmn Napg Crlf2 Parp12 Cdv3 Tmod2 Ap3s1 Taok1 Mphosph10 E130102H24Rik Bag1 Cdh11 Hist2h2aa1 mt-Nd3 Timm13 Kdm5b Pycr2 Grik2 Nrip1 Gdi1 Alg5 Epb41l1 BC004004 Leng8 Lyz2 Pcdh9 Pin4 Trim9 Hmgb2 Hnrnpa2b1 Sec11a Gigyf1 H2-Aa Mef2d C1qa Ttc3 Cdk14 Zmym5 Bc1 Strbp Mapk8ip3 Amer2 Unc5c Prmt2 Sun1 Capn15 Mapk8 Zbtb11 Clstn1 Adss Mycbp2 Nufip2 Ints11 Glt8d1 Myef2 Vps50 Idh3a Eps15l1 Matr3 Ercc6l2 Fbxo38 Ina Yeats2 Spns1 Naa15 Ubr5 Uxs1 Rps6kb2 Ptprf Agk Ptpro Grk3 Magi1 Clasp2 Rnf166 Plekha5 Camk1 Kcna2 Cnot10 Ppp6r3 Spock2 Dnmt3a Uchl1 Cacna1a Rab6b Actn4 Cab39 Frmd4a Gabrb1 Atcay Usp34 Stag1 Dnajc5 Ppp3r1 Cacna1e Ep300 Ppip5k2 Agtpbp1 Ints6l Ndufs1 Cdc23 Plxnc1 Mapk10 Anapc1 Nsmaf Pianp Srsf1 Acp2 Kcnb1 Zmym3 Cdc42bpa Tdrkh Usp11 Hivep2 Nfat5 Stxbp1 Ttc4 Hdac11 Rev1 Slc25a23 Rims1 Enpp5 Nisch Pabpn1 Atp2b1 Phkg2 Cep350 Atp8a1 B3gat1 Socs7 Gga1 Nav2 Pikfyve Pitpnb AI480526 Ocrl Dennd1a Rc3h2 Ubr1 Rock2 Tcaf1 Myo9a Atp6v0e2 Agap2 Abca3 St5 Prnp Klf7 Jakmip2 Dusp8 Camk2d Cdk16 Cdk5r1 Acox1 Nr1d2 Cttnbp2 Lrrc4c Adgrb1 Hirip3 Zzef1 Hjurp 2310061I04Rik Rbm33 Maf1 Gm37494 Zfp598 Fam168a Nrxn3 Tenm1 Whamm Nme7 Ehmt1 Pfkm Appl2 Slf2 Rspry1 Rcor3 Fus Glrb Gls Rsbn1 Agap3 Grina Zfp612 Ccdc50 Wrb Nptn Oaz2 Strn3 Nktr Phf20l1 Spast Snrpn Gabbr1 Fmr1 Elavl3 Dmd Ubr4 9330159F19Rik Psap Zfp945 Syne1 Taz Csad Tbc1d23 Uvssa Lonp1 Tspyl2 Rbm5 Unc80 Vps13c Sh3glb2 Ap1g1 Zcchc11 Becn1 Zfp326 Klhdc10 2700081O15Rik Fam173a Kif1b Atp6v1b2 Tnrc6a Aplp1 Setd7 Phip Rgs7bp Prkacb Tacc1 Il1rapl1 Syn2 Ubtf Negr1 mt-Nd5 Ssbp2 Cpe Prkcb Atp6v0a1 Asic1 Ncor2 Ip6k1 Ranbp3 Syngr1 Caskin1 Miga1 Per1 Zranb2 Tmem57 Nr2c2 Actr1b Gclm Slc27a1 Atxn7l3 Upf1 Tfcp2 Rev3l Plekhb1 Snx27 Cdk13 Zmat3 Usp9x Clip2 Gpc1 Stk38 Nebl Fubp1 Ppme1 Ddb1 Mdm4 Dync1h1 Cit Akap8l Atxn2l Fbxl5 Orc4 Sfswap Ccl4 6330403K07Rik Arrb2 Nlgn1 Dctn2 2310035C23Rik Cbl Mapre3 Ppm1l Chfr Rufy3 Tmx4 Trappc8 Kat6b Map7d1 Setd2 Golga4 Snrnp70 Slc6a6 Hnrnpr Ppp3cb Kmt2d 2210016L21Rik Xpr1 Prpsap1 Senp6 Acap3 Copg1 Kmt2c Iffo1 Celf1 Psmd11 5330434G04Rik Mar-06 Klc1 Olfm1 Rorb Podxl2 Ppp3ca Tmem181a Pcdh7 Frrs1l Myo5a Pcmt1 Tomm70a Sirt7 Mmp16 Cxxc4 Gramd1b Atrx Hdac7 Smg1 Srgap3 Tmx3 Pds5a Rab28 Cul5 Slc25a12 Ano10 Nt5c2 Usp48 Zfp445 Mast3 Cdk5 Ppp6r2 Pde10a Ppp1r12a Sgip1 Camk2n1 Arid1a Fryl Agrn Tsix Nit1 Lamtor1 Slc38a1 Pbx1 Kbtbd11 Asap1