# Project File generated by DnaSP Ver. 6.12.01; 19 - March - 2020 # =================================================================== # Information from file 1287+BIOKO119+3D7(ÎÞNigeria).fas # Number of sequences: 1407 Number of sequences used: 1407 # Number of Sites in the complete Data File: 1680 # Selected Region: 1-1680 # Sites with alignment gaps: not considered # Invariable sites: removed # Number of Sites in "TRAP.hap" file: 171 [Profile] Title = "Haplotype Data from 1287+BIOKO119+3D7(ÎÞNigeria).fas DnaSP file" NbSamples = 15 DataType = DNA GenotypicData = 0 LocusSeparator = NONE MissingData = "?" CompDistMatrix = 1 [Data] [[HaplotypeDefinition]] HaplList = EXTERN "TRAP.hap" [[Samples]] SampleName = "STANDRAD" SampleSize = 1 SampleData= { Hap_1 1 } SampleName = "Bangladesh" SampleSize = 23 SampleData= { Hap_2 1 Hap_3 1 Hap_4 1 Hap_5 1 Hap_6 1 Hap_7 1 Hap_8 1 Hap_9 1 Hap_10 1 Hap_11 1 Hap_12 1 Hap_13 1 Hap_14 1 Hap_15 1 Hap_16 1 Hap_17 1 Hap_18 1 Hap_19 1 Hap_20 1 Hap_21 1 Hap_22 1 Hap_23 1 Hap_24 1 } SampleName = "Cambodia" SampleSize = 393 SampleData= { Hap_7 11 Hap_18 31 Hap_25 40 Hap_26 82 Hap_27 16 Hap_28 17 Hap_29 5 Hap_30 29 Hap_31 2 Hap_32 29 Hap_33 11 Hap_34 6 Hap_35 1 Hap_36 8 Hap_37 3 Hap_38 2 Hap_39 3 Hap_40 1 Hap_41 1 Hap_42 5 Hap_43 4 Hap_44 1 Hap_45 2 Hap_46 1 Hap_47 3 Hap_48 3 Hap_49 2 Hap_50 1 Hap_51 1 Hap_52 1 Hap_53 1 Hap_54 1 Hap_55 1 Hap_56 1 Hap_57 2 Hap_58 1 Hap_59 8 Hap_60 2 Hap_61 1 Hap_62 1 Hap_63 10 Hap_64 1 Hap_65 1 Hap_66 2 Hap_67 1 Hap_68 3 Hap_69 2 Hap_70 1 Hap_71 1 Hap_72 2 Hap_73 1 Hap_74 2 Hap_75 1 Hap_76 2 Hap_77 1 Hap_78 3 Hap_79 3 Hap_80 1 Hap_81 1 Hap_82 1 Hap_83 1 Hap_84 1 Hap_85 1 Hap_86 1 Hap_87 2 Hap_88 1 Hap_89 1 Hap_90 2 Hap_91 1 Hap_92 1 } SampleName = "Congo" SampleSize = 54 SampleData= { Hap_69 2 Hap_93 1 Hap_94 1 Hap_95 1 Hap_96 1 Hap_97 1 Hap_98 1 Hap_99 1 Hap_100 1 Hap_101 1 Hap_102 1 Hap_103 1 Hap_104 1 Hap_105 1 Hap_106 1 Hap_107 1 Hap_108 1 Hap_109 1 Hap_110 1 Hap_111 1 Hap_112 1 Hap_113 2 Hap_114 1 Hap_115 1 Hap_116 1 Hap_117 1 Hap_118 1 Hap_119 2 Hap_120 1 Hap_121 2 Hap_122 1 Hap_123 1 Hap_124 1 Hap_125 1 Hap_126 1 Hap_127 1 Hap_128 1 Hap_129 1 Hap_130 1 Hap_131 1 Hap_132 1 Hap_133 1 Hap_134 1 Hap_135 1 Hap_136 1 Hap_137 1 Hap_138 1 Hap_139 1 Hap_140 1 Hap_141 1 } SampleName = "Gambia" SampleSize = 34 SampleData= { Hap_1 1 Hap_142 1 Hap_143 3 Hap_144 1 Hap_145 1 Hap_146 1 Hap_147 1 Hap_148 3 Hap_149 2 Hap_150 1 Hap_151 1 Hap_152 1 Hap_153 2 Hap_154 1 Hap_155 1 Hap_156 1 Hap_157 1 Hap_158 1 Hap_159 1 Hap_160 1 Hap_161 1 Hap_162 1 Hap_163 1 Hap_164 1 Hap_165 1 Hap_166 1 Hap_167 1 Hap_168 1 } SampleName = "Ghana" SampleSize = 228 SampleData= { Hap_1 4 Hap_18 1 Hap_69 2 Hap_107 7 Hap_136 2 Hap_142 1 Hap_148 7 Hap_156 1 Hap_166 1 Hap_167 2 Hap_168 6 Hap_169 1 Hap_170 1 Hap_171 1 Hap_172 1 Hap_173 1 Hap_174 1 Hap_175 1 Hap_176 1 Hap_177 1 Hap_178 1 Hap_179 1 Hap_180 1 Hap_181 1 Hap_182 1 Hap_183 1 Hap_184 1 Hap_185 3 Hap_186 1 Hap_187 3 Hap_188 1 Hap_189 1 Hap_190 1 Hap_191 1 Hap_192 1 Hap_193 1 Hap_194 1 Hap_195 1 Hap_196 1 Hap_197 1 Hap_198 1 Hap_199 1 Hap_200 1 Hap_201 1 Hap_202 1 Hap_203 1 Hap_204 1 Hap_205 1 Hap_206 1 Hap_207 1 Hap_208 1 Hap_209 1 Hap_210 1 Hap_211 1 Hap_212 1 Hap_213 1 Hap_214 1 Hap_215 1 Hap_216 1 Hap_217 1 Hap_218 1 Hap_219 1 Hap_220 1 Hap_221 1 Hap_222 1 Hap_223 2 Hap_224 1 Hap_225 1 Hap_226 1 Hap_227 1 Hap_228 1 Hap_229 2 Hap_230 2 Hap_231 1 Hap_232 2 Hap_233 1 Hap_234 1 Hap_235 1 Hap_236 1 Hap_237 1 Hap_238 1 Hap_239 1 Hap_240 1 Hap_241 1 Hap_242 1 Hap_243 1 Hap_244 1 Hap_245 1 Hap_246 1 Hap_247 2 Hap_248 1 Hap_249 1 Hap_250 1 Hap_251 1 Hap_252 1 Hap_253 1 Hap_254 1 Hap_255 1 Hap_256 1 Hap_257 2 Hap_258 1 Hap_259 1 Hap_260 1 Hap_261 1 Hap_262 1 Hap_263 2 Hap_264 1 Hap_265 1 Hap_266 1 Hap_267 1 Hap_268 1 Hap_269 1 Hap_270 1 Hap_271 1 Hap_272 1 Hap_273 1 Hap_274 1 Hap_275 1 Hap_276 1 Hap_277 1 Hap_278 1 Hap_279 1 Hap_280 1 Hap_281 1 Hap_282 1 Hap_283 1 Hap_284 1 Hap_285 1 Hap_286 1 Hap_287 1 Hap_288 1 Hap_289 1 Hap_290 1 Hap_291 1 Hap_292 1 Hap_293 1 Hap_294 1 Hap_295 1 Hap_296 1 Hap_297 1 Hap_298 1 Hap_299 1 Hap_300 1 Hap_301 1 Hap_302 1 Hap_303 1 Hap_304 1 Hap_305 1 Hap_306 1 Hap_307 1 Hap_308 1 Hap_309 2 Hap_310 1 Hap_311 1 Hap_312 1 Hap_313 1 Hap_314 1 Hap_315 1 Hap_316 1 Hap_317 1 Hap_318 1 Hap_319 1 Hap_320 1 Hap_321 1 Hap_322 1 Hap_323 1 Hap_324 1 Hap_325 1 Hap_326 1 Hap_327 1 Hap_328 1 Hap_329 1 Hap_330 1 Hap_331 1 Hap_332 1 Hap_333 1 Hap_334 1 Hap_335 1 Hap_336 1 Hap_337 1 Hap_338 1 Hap_339 1 Hap_340 1 Hap_341 1 Hap_342 1 Hap_343 1 Hap_344 1 Hap_345 1 Hap_346 1 Hap_347 1 Hap_348 1 Hap_349 1 Hap_350 1 } SampleName = "Guinea" SampleSize = 49 SampleData= { Hap_133 1 Hap_148 1 Hap_162 3 Hap_167 1 Hap_168 1 Hap_257 1 Hap_278 1 Hap_295 1 Hap_345 1 Hap_351 1 Hap_352 3 Hap_353 1 Hap_354 1 Hap_355 1 Hap_356 2 Hap_357 1 Hap_358 1 Hap_359 1 Hap_360 1 Hap_361 2 Hap_362 1 Hap_363 1 Hap_364 1 Hap_365 1 Hap_366 1 Hap_367 1 Hap_368 1 Hap_369 1 Hap_370 1 Hap_371 1 Hap_372 2 Hap_373 1 Hap_374 1 Hap_375 1 Hap_376 1 Hap_377 1 Hap_378 1 Hap_379 1 Hap_380 1 Hap_381 1 Hap_382 1 Hap_383 1 } SampleName = "Laos" SampleSize = 42 SampleData= { Hap_7 1 Hap_18 1 Hap_30 3 Hap_32 2 Hap_37 4 Hap_42 2 Hap_49 2 Hap_57 1 Hap_63 4 Hap_67 1 Hap_68 1 Hap_73 1 Hap_90 1 Hap_384 1 Hap_385 2 Hap_386 1 Hap_387 1 Hap_388 1 Hap_389 6 Hap_390 1 Hap_391 1 Hap_392 1 Hap_393 2 Hap_394 1 } SampleName = "Malawi" SampleSize = 106 SampleData= { Hap_69 1 Hap_95 2 Hap_107 1 Hap_117 2 Hap_118 3 Hap_136 3 Hap_153 1 Hap_167 4 Hap_395 1 Hap_396 1 Hap_397 1 Hap_398 1 Hap_399 1 Hap_400 1 Hap_401 1 Hap_402 1 Hap_403 1 Hap_404 1 Hap_405 1 Hap_406 1 Hap_407 1 Hap_408 1 Hap_409 1 Hap_410 1 Hap_411 1 Hap_412 1 Hap_413 1 Hap_414 2 Hap_415 1 Hap_416 1 Hap_417 1 Hap_418 1 Hap_419 1 Hap_420 1 Hap_421 1 Hap_422 1 Hap_423 2 Hap_424 1 Hap_425 2 Hap_426 1 Hap_427 1 Hap_428 1 Hap_429 5 Hap_430 4 Hap_431 1 Hap_432 1 Hap_433 1 Hap_434 1 Hap_435 1 Hap_436 1 Hap_437 1 Hap_438 3 Hap_439 1 Hap_440 1 Hap_441 1 Hap_442 1 Hap_443 1 Hap_444 1 Hap_445 1 Hap_446 1 Hap_447 1 Hap_448 1 Hap_449 1 Hap_450 1 Hap_451 1 Hap_452 1 Hap_453 1 Hap_454 1 Hap_455 1 Hap_456 1 Hap_457 1 Hap_458 1 Hap_459 1 Hap_460 1 Hap_461 1 Hap_462 1 Hap_463 1 Hap_464 1 Hap_465 2 Hap_466 1 Hap_467 1 Hap_468 1 Hap_469 2 } SampleName = "Mali" SampleSize = 39 SampleData= { Hap_148 1 Hap_167 1 Hap_187 1 Hap_191 2 Hap_228 1 Hap_299 1 Hap_362 1 Hap_470 1 Hap_471 1 Hap_472 1 Hap_473 1 Hap_474 1 Hap_475 1 Hap_476 1 Hap_477 1 Hap_478 1 Hap_479 1 Hap_480 1 Hap_481 1 Hap_482 1 Hap_483 1 Hap_484 1 Hap_485 1 Hap_486 1 Hap_487 1 Hap_488 1 Hap_489 1 Hap_490 1 Hap_491 1 Hap_492 1 Hap_493 1 Hap_494 1 Hap_495 1 Hap_496 1 Hap_497 1 Hap_498 1 Hap_499 1 Hap_500 1 } SampleName = "Myanmar" SampleSize = 45 SampleData= { Hap_7 4 Hap_25 1 Hap_30 2 Hap_34 2 Hap_37 1 Hap_72 1 Hap_78 3 Hap_501 3 Hap_502 1 Hap_503 3 Hap_504 3 Hap_505 2 Hap_506 1 Hap_507 7 Hap_508 3 Hap_509 3 Hap_510 1 Hap_511 1 Hap_512 1 Hap_513 1 Hap_514 1 } SampleName = "Senegal" SampleSize = 110 SampleData= { Hap_1 2 Hap_8 1 Hap_69 2 Hap_148 9 Hap_153 1 Hap_156 1 Hap_164 2 Hap_167 7 Hap_168 9 Hap_169 1 Hap_221 1 Hap_223 2 Hap_257 2 Hap_266 1 Hap_267 1 Hap_296 1 Hap_339 1 Hap_345 2 Hap_347 2 Hap_352 2 Hap_359 1 Hap_515 1 Hap_516 1 Hap_517 1 Hap_518 1 Hap_519 1 Hap_520 1 Hap_521 1 Hap_522 4 Hap_523 7 Hap_524 1 Hap_525 1 Hap_526 2 Hap_527 1 Hap_528 3 Hap_529 3 Hap_530 1 Hap_531 1 Hap_532 1 Hap_533 2 Hap_534 1 Hap_535 1 Hap_536 2 Hap_537 1 Hap_538 1 Hap_539 1 Hap_540 1 Hap_541 1 Hap_542 1 Hap_543 1 Hap_544 1 Hap_545 1 Hap_546 1 Hap_547 1 Hap_548 1 Hap_549 1 Hap_550 1 Hap_551 1 Hap_552 1 Hap_553 1 Hap_554 1 Hap_555 1 Hap_556 1 Hap_557 1 } SampleName = "Vietnam" SampleSize = 60 SampleData= { Hap_18 5 Hap_29 1 Hap_30 3 Hap_32 1 Hap_36 2 Hap_37 4 Hap_40 1 Hap_41 3 Hap_42 1 Hap_47 1 Hap_67 1 Hap_72 1 Hap_77 1 Hap_78 6 Hap_89 3 Hap_384 1 Hap_386 1 Hap_558 6 Hap_559 3 Hap_560 4 Hap_561 1 Hap_562 3 Hap_563 5 Hap_564 1 Hap_565 1 } SampleName = "Bioko" SampleSize = 119 SampleData= { Hap_1 1 Hap_104 3 Hap_370 8 Hap_578 1 Hap_579 1 Hap_580 1 Hap_581 1 Hap_582 3 Hap_583 3 Hap_584 1 Hap_585 1 Hap_586 5 Hap_587 1 Hap_588 1 Hap_589 1 Hap_590 1 Hap_591 5 Hap_592 1 Hap_593 1 Hap_594 1 Hap_595 1 Hap_596 1 Hap_597 3 Hap_598 1 Hap_599 2 Hap_600 1 Hap_601 1 Hap_602 1 Hap_603 1 Hap_604 1 Hap_605 1 Hap_606 1 Hap_607 1 Hap_608 1 Hap_609 1 Hap_610 3 Hap_611 1 Hap_612 1 Hap_613 1 Hap_614 1 Hap_615 1 Hap_616 1 Hap_617 3 Hap_618 1 Hap_619 1 Hap_620 1 Hap_621 2 Hap_622 2 Hap_623 1 Hap_624 1 Hap_625 1 Hap_626 1 Hap_627 1 Hap_628 1 Hap_629 1 Hap_630 1 Hap_631 1 Hap_632 1 Hap_633 1 Hap_634 1 Hap_635 1 Hap_636 1 Hap_637 1 Hap_638 1 Hap_639 1 Hap_640 1 Hap_641 1 Hap_642 1 Hap_643 1 Hap_644 1 Hap_645 2 Hap_646 2 Hap_647 1 Hap_648 1 Hap_649 1 Hap_650 1 Hap_651 1 Hap_652 1 Hap_653 1 Hap_654 1 Hap_655 1 Hap_656 1 Hap_657 1 Hap_658 1 Hap_659 1 Hap_660 1 Hap_661 1 } SampleName = "Thailand" SampleSize = 104 SampleData= { Hap_7 6 Hap_18 5 Hap_25 16 Hap_26 3 Hap_30 6 Hap_32 1 Hap_34 1 Hap_47 3 Hap_72 2 Hap_78 2 Hap_386 3 Hap_501 1 Hap_507 7 Hap_509 7 Hap_510 4 Hap_511 2 Hap_566 3 Hap_567 2 Hap_568 9 Hap_569 4 Hap_570 2 Hap_571 7 Hap_572 2 Hap_573 1 Hap_574 1 Hap_575 2 Hap_576 1 Hap_577 1 } [[Structure]] StructureName="New Edited Structure" NbGroups=1 Group={ "STANDRAD" "Bangladesh" "Cambodia" "Congo" "Gambia" "Ghana" "Guinea" "Laos" "Malawi" "Mali" "Myanmar" "Senegal" "Vietnam" "Bioko" "Thailand" }