LOCUS Seq1 6015 bp RNA linear VRL 12-MAR-2020 DEFINITION Pepper vein yellows virus isolate YN,complete genome. ACCESSION Seq1 VERSION KEYWORDS . SOURCE Pepper vein yellows virus ORGANISM Pepper vein yellows virus Viruses; Riboviria; Luteoviridae; Polerovirus. REFERENCE 1 (bases 1 to 6015) AUTHORS Peng,J., Lu,Y., Wang,S., Yin,Y., Zheng,H., Lin,L., Yuan,E. and Yan,F. TITLE Direct Submission JOURNAL Submitted (12-MAR-2020) Institute of Plant Virology, Ningbo University, No.818 in Fenghua Road, Ningbo, Zhejiang 315211, China COMMENT Bankit Comment: TOTAL # OF SEQS:1 ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6015 /organism="Pepper vein yellows virus" /mol_type="genomic RNA" /isolate="Yunnan" /isolation_source="fruit" /host="pepper" /db_xref="taxon:909827" /country="China" /collection_date="01-Aug-2019" /note="Pepper vein yellows virus;Viruses;Riboviria;Luteoviridae;Polerovirus" CDS 51..800 /codon_start=1 /product="putative P0 protein" /translation="MNFELINGSHLKVSLTRKLSYRERILNLAVFLSQYLVTVQENAT TNHFLRSVCALLPFLLGSQCPFVAGNAPQRNSKREHKRISRLALFCGVNIAPGCRGEV STSAWLQTDNNLGAPRAHLKRCAGSTMASYIQRFQTPLFQGAEEFSRFLRVWTYHCES VVEESSPKLSVDRGLIVELWHLGHCLLDLLSGDDIYHARRLSRIALRLHRIYGESIAM DVYRLAHLPRSVNFKSGEEYLHGSQIQKELQ" CDS join(175..1620,1620..3431) /exception="ribosomal_slippage" /codon_start=1 /product="putative P1-P2 fusion protein" /translation="MQLQTIFFALFVLSSLSFSAANAPLWQGMLRKGTPNGNISEFPG WPFSAELTLLPAVEERFLPPPGSKPIIISEPHEPTLRDALDLLWQVISRDSRRLSSKA QKNFQDSCAYGLTTAKAWSKRALQSFLWTVVSLWSFGIWVIVSWIFFLVTTFTMPVVC LALLYACTEFMVKALQWMFTGWPTCLALLILKAGKNIFTVPRFRRNYSEEKQVKGFIS LKIPQSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSMKT PNKIPLRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEK NEWMADHGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENEQNFNVMAT IPPVPGLTTPQYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDED FETEVKSKPAPAPVAQEAKSKSGAEEAPPVSKIPAVVPTSSRVGKRERQSCLPNQQQH CPEERRGQESRGSGRKGPRTAHPLKASRISRRRRKIFREAFGEIGGENRPLYYRKESG GSSGPEGHEETPGKPAAQTTAENFQRYFEGSYKWEVSASSQEIPGFQQCGSLPQYYHP KQIKGSEWGTQLIKDHPELGEKVSGFGWPTVGPQAEVTSLTLQAERWLQRAQSAKIPS SEDRERVINKTVEAYSNVKTYGPTATRGNKLEWRQFLEDFKSAVFSLELDAGIGVPYI AYGRPTHKGWVEDPKLLPVLARLTFNRLQKMLEVESSNMSAEELVQAGLCDPIRTFVK REPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRANPSKPGFGLSTDE QVLEFVQALAAQVEVPPEEVITSWEKYLVPTDCSGFDWSVAEWMLYDDMVVRNKLTLD LNPTTEKLRSAWLKCICNSVLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYH CGADWAMAMGDDALESVNTNLEVYKDLGFKVEVSGQLEFCSHIFRAPDLALPVNERKM LYKLIFGYNPGSGNLEVISNYIAACVSVLNELRHDPDSVALLHSWLVSPVLPQNN" CDS 175..2139 /codon_start=1 /product="putative P1 protein" /translation="MQLQTIFFALFVLSSLSFSAANAPLWQGMLRKGTPNGNISEFPG WPFSAELTLLPAVEERFLPPPGSKPIIISEPHEPTLRDALDLLWQVISRDSRRLSSKA QKNFQDSCAYGLTTAKAWSKRALQSFLWTVVSLWSFGIWVIVSWIFFLVTTFTMPVVC LALLYACTEFMVKALQWMFTGWPTCLALLILKAGKNIFTVPRFRRNYSEEKQVKGFIS LKIPQSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSMKT PNKIPLRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEK NEWMADHGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENEQNFNVMAT IPPVPGLTTPQYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDED FETEVKSKPAPAPVAQEAKSKSGAEEAPPVSKSRQWYPRLPESGNEKGRAACQTNSNT APKKEEGKKAEVAAEKAPAQPTPSKPQESADGGEKYLERLLEKLVERIDLSTIEKKVV EVVAQKAMKKPQGSQRRRRPRKTSNDTSKEATNGRYQPPHKRSQGSNNAEASPSTTTQ SKSKVANGAPSSSKIIQSWERKSPASAGQQ" CDS 3631..5790 /codon_start=1 /transl_except=(pos:4249..4251,aa:OTHER) /product="putative read through protein P5" /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPSGAARRGG RRRRNGGRNRRSRNGVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESVALSGGVL KAYHEYKITMVNIRFISESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFR ASQINGLEWHDTSEDQFRLLYKGNGTKGVAAGFFQIRYTVQLHNPKXVDAEPGSSPGP QPQPTPSPSPQKHERFIAYVGIPMLTIQARENDDQILLRSMGLQRMKYIEDENQNYTN IDSQFYSQSNVNAVPMYYFNVPKGTWSVDISCEGYQPTSSTTDPNRGRSDGLIAYSNS DSDYWNVGEADGVKISNLRNDNTYRQGHPDLEINSCHFRDGQLLERDATISFHVEAPD DGRFFLIGPAIQKTAKYNYTISYGEWTDRDMELGLITVVLDEHLEGSGSGNSARRERR LLHQHCKSLYAPEGPPENKPWDDNQIIVGERQLRKTLSMDMSGTGSDLREGKLETNPS DDVRNELNYSLSLDDPEDELVDEPNFIPGMRMNLEAVPLAIPVNKDYILRERGITTNL VEPAYTQDVAPQNQLEEDPWKHVRDFSKSHTSKSPASVASGSTLRGNLRGRSMPPPLP PPSETIGDSLLTSNVQWDPPGSPLTPFKDKELAKPPSDARSSISGRLTGGLLKSRVDK ELASLTTAQRQRYEITRQNLGKTAAQDYLRKCKEGSK" CDS 3631..4251 /codon_start=1 /product="putative P3 protein" /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPSGAARRGG RRRRNGGRNRRSRNGVGGRSSNSETFVFNKDSIKDSSSGAVTFGPSLSESVALSGGVL KAYHEYKITMVNIRFISESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFR ASQINGLEWHDTSEDQFRLLYKGNGTKGVAAGFFQIRYTVQLHNPK" CDS 3662..4132 /codon_start=1 /product="putative P4 protein" /translation="MEMVDHATPAVADAHDRFALSLWSHPLGQHGAEVEDDEMEAGTE EAEMELEDGRATARLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFLKPTMSIRSQW STYASSVNPLPQRRAPSLTSWTPTASLLVSNPPCVNSPSPKAGKQRFGLRRLMG" BASE COUNT 1693 a 1477 c 1473 g 1372 t ORIGIN 1 acaaaatata cgaagagaga gagcccttgc ttgtgatttc ttcaagtttt atgaacttcg 61 agctgatcaa cggaagccat cttaaagttt ccctcactcg caagctcagt tacagagaaa 121 ggatcttaaa cttggcagta ttcttaagcc aatatctcgt aactgtacaa gaaaatgcaa 181 ctacaaacca ttttcttcgc tctgtttgtg ctctcctccc tttccttctc ggcagccaat 241 gcccctttgt ggcagggaat gctccgcaaa ggaactccaa acgggaacat aagcgaattt 301 cccggctggc ccttttctgc ggagttaaca ttgctcccgg ctgtagagga gaggtttcta 361 cctccgcctg gctccaaacc gataataatc tcggagcccc acgagcccac cttaagagat 421 gcgctggatc tactatggca agttatatcc agagattcca gacgcctctc ttccaaggcg 481 cagaagaatt ttcaagattc ctgcgcgtat ggacttacca ctgcgaaagc gtggtcgaag 541 agagctctcc aaagctttct gtggaccgtg gtctcattgt ggagctttgg catctgggtc 601 attgtctcct ggatcttctt tctggtgacg acatttacca tgcccgtcgt ttgtctcgca 661 ttgctttacg cctgcacaga atttatggtg aaagcattgc aatggatgtt taccggctgg 721 cccacttgcc tcgctctgtt aattttaaaa gcggggaaga atatcttcac ggttcccaga 781 ttcagaagga actacagtga agaaaagcaa gttaagggat ttatttcttt gaaaatccct 841 cagagccccc cccgtggaag cgtgctactc gtgcaacatg aagacaactc tcatgccggg 901 tacgccagct gtgtgcggtt atatgacggc actctagccc ttatgacctg tcaccacgtg 961 ggcacagggg ttcccggagg aaaggtgacc tccatgaaaa cacctaataa gataccactt 1021 cgcctattca cacctctgat ctcttcagaa aaaggagatt tcatgttgat gagcgggccc 1081 ccaaactggg agagcctgtt aggctgtaaa ggagcccact tcgtctccgc atcacaactt 1141 gctaaatcta agatgcggtt ctttttcatt gagaaaaacg agtggatggc tgatcacggt 1201 gagattgtag gtccacgtga tcactggttt gctacaacgc tctgcaactc agagcctgga 1261 cattctggca ccccgatctt caatggaaaa accatagtgg gtgtgcacgc tggaggtgaa 1321 aatgagcaga actttaatgt gatggcaaca atccctcccg tccccggttt gacgactcct 1381 cagtacgtct tcgagactac tgcaccccag ggtcgagtct tcactgatga ggacttaagt 1441 gagatgatga aaagcgtcac ctcatatccc cagttagaaa aattcaaaag ccatactggg 1501 aagaactggg cagatgatga agacttcgaa actgaagtca agagcaaacc cgccccagca 1561 cctgtggctc aagaagctaa atctaagagc ggtgctgagg aagctccgcc ggtgagcaaa 1621 tcccggcagt ggtacccacg tcttcccgag tcgggaaacg agaaaggcag agctgcctgc 1681 caaaccaaca gcaacactgc cccgaagaaa gaagagggca agaaagcaga ggtagcggcc 1741 gaaaaggccc ccgcacagcc caccccctca aagcctcaag aatcagccga cggcggcgaa 1801 aaatatttag agaggctttt ggagaaattg gtggagagaa tcgacctctc tactatagaa 1861 aagaaagtgg tggaagtagt ggcccagaag gccatgaaga aaccccaggg aagccagcgg 1921 cgcagacgac cgcggaaaac ttccaacgat acttcgaagg aagctacaaa tgggaggtat 1981 cagcctcctc acaagagatc ccagggttcc aacaatgcgg aagcctcccc cagtactacc 2041 acccaaagca aatcaaaggt agcgaatggg gcacccagct catcaaagat catccagagc 2101 tgggagagaa agtctccggc ttcggctggc caacagtagg cccccaagct gaggttacct 2161 ctctcacttt acaagcagag aggtggctgc aacgcgcgca gtcagctaaa atcccgtcgt 2221 ctgaggaccg ggagcgcgtt ataaacaaaa ctgtggaggc ctactctaat gtcaaaactt 2281 atggccccac agctactaga gggaacaagc tcgagtggcg gcaatttcta gaagatttta 2341 agtcagccgt cttttctctg gagcttgacg caggtatagg tgtaccatat atcgcctatg 2401 gaaggcccac tcacaaaggt tgggtggaag atccgaaact cctgccagtg ctcgcccgac 2461 tcactttcaa ccgtttacag aagatgttgg aagtcgagtc ctctaatatg agcgctgaag 2521 agcttgtgca agctggtctc tgcgatccga taaggacatt tgttaagaga gaaccacaca 2581 agcaatctaa actcgatgaa ggtcgctatc gtctcatcat gagtgtttcc ctagtagatc 2641 aactggtagc ccgggttctg ttccaaaatc agaacaagcg agaaatcgct ctttggaggg 2701 caaatccctc aaaacccggt tttggcttgt ccacggatga gcaagtgctg gagttcgtac 2761 aagctctggc cgcgcaagtg gaagtcccac cagaggaagt gattacctcg tgggagaagt 2821 accttgtgcc gactgattgc tccggatttg actggagcgt tgcggaatgg atgctatacg 2881 acgatatggt cgtccgcaat aaactcacac tggacttaaa tcctacaaca gagaagctac 2941 gatctgcgtg gctaaaatgt atctgcaata gtgtcctgtg tttgagcgat ggcacactcc 3001 tcgcccaaag ggtccccggc gttcaaaagt ccggtagcta caacacaagt agctcaaatt 3061 caaggatccg agttatggcc gcctaccact gtggggccga ctgggccatg gcgatgggag 3121 atgatgccct cgagtcagtc aacaccaacc tagaggtgta taaagatcta ggtttcaaag 3181 tcgaggtttc aggacaactg gaattctgct ctcacatctt tagagcgcct gacctcgccc 3241 ttcccgtgaa tgagcgtaaa atgctgtaca agctcatctt cggatacaat ccgggaagtg 3301 ggaatctgga agtgatctca aattacatag ccgcctgcgt ctcagtctta aatgaattgc 3361 ggcatgaccc agattctgtt gctctccttc actcgtggct agtctctcca gtgctgccac 3421 aaaataattg aagagagaga agataactag ccaagcatac atcagttgca agcgttggaa 3481 agttttagtc tgattacaaa cagcctgaca taatagatta taaattttta gcaggatttg 3541 cgtttggatt cttatccgca atcccaattt ctgtagcagg catataccta gtctacctta 3601 aaatctcagc ccacgttcgc gcgatcgtta atgaatacgg gaggagttag gagaaataat 3661 aatggaaatg gtggatcacg caacacccgc cgtcgcagac gcccacgaca ggttcgccct 3721 gtcgttgtgg tcgcaccctc tggggcagca cggcgcggag gtcgaagacg acgaaatgga 3781 ggccggaacc gaagaagccg aaatggagtt ggaggacggt cgagcaacag cgagactttc 3841 gtcttcaaca aggactcaat caaggatagt tcctcaggag ctgtcacctt cgggccgtct 3901 ctatcagaga gcgtcgcgct ttcaggtgga gttcttaaag cctaccatga gtataagatc 3961 acaatggtca acatacgctt catcagtgaa tcctcttcca cagcggaggg ctccatcgct 4021 tacgagctgg acccccactg caagcttact agtctccaat ccaccctgcg taaattcccc 4081 gtcaccaaag gcgggcaagc aacgtttcgg gcttcgcaga ttaatgggtt agagtggcat 4141 gatacatccg aagatcaatt taggctgctc tataaaggca acggaacaaa aggtgttgcc 4201 gccgggttct ttcaaatccg gtacaccgtg caactgcaca accccaaata ggtagacgcc 4261 gagccaggat ctagcccagg acctcaacct caacccacac cctcaccttc tcctcaaaag 4321 catgagcgct tcattgcata cgtcggcatt ccaatgttga caattcaagc gcgggagaac 4381 gacgaccaga tcttattaag atccatgggt ttgcaacgga tgaagtatat agaggacgag 4441 aatcaaaact atacgaacat cgattcgcag ttttattctc agtctaatgt caatgccgtc 4501 cccatgtatt atttcaacgt gccaaaaggt acatggtcag tcgatatcag ctgtgaaggt 4561 tatcagccaa caagcagcac cacggatcca aaccgtggga ggagtgatgg gttaatagct 4621 tattccaata gtgattcaga ttactggaac gtaggagaag cggatggtgt taaaatttcg 4681 aatttgagga atgataacac gtaccgccaa ggacatccag atcttgagat caattcctgt 4741 cattttagag acgggcaact gttagaacgt gatgcaacta taagtttcca cgtcgaagcc 4801 ccagatgatg ggcgtttctt tctgatagga cccgcgattc agaaaaccgc caagtacaat 4861 tatacaatat cttatggcga gtggacagac agagatatgg aattagggct aatcacagta 4921 gtgctagatg agcaccttga gggttctggc tcgggcaatt cggcgaggag agaaaggaga 4981 ttattgcatc aacattgcaa atctctctac gccccggaag gaccaccgga aaacaaaccc 5041 tgggatgaca accagatcat tgttggagaa agacaactcc gtaaaactct gtctatggac 5101 atgtcaggaa ctggttctga cctgagagaa ggaaaactcg agacaaaccc tagtgatgat 5161 gtcaggaatg agttgaatta ttcgttgagt cttgatgacc ctgaagatga gctcgtcgat 5221 gagccaaact ttattcctgg aatgcggatg aatctagagg cagtaccttt agcaataccc 5281 gtcaacaaag actacattct tagagaaaga ggcataacaa caaacttggt tgaaccagcc 5341 tacactcaag atgtagctcc ccaaaatcag ttggaggagg atccctggaa acacgtccgg 5401 gatttcagta aaagtcacac tagtaagagc ccagcttctg tcgcgtctgg gtcaacattg 5461 agaggaaact taagagggag atctatgccc ccacctctcc cccctccatc tgagacgatt 5521 ggggattcct tgctcaccag caatgtgcaa tgggatcccc caggctcacc tcttactcct 5581 tttaaggata aagagttggc gaaaccgcct tctgatgctc gtagctcgat atctggtcgt 5641 ttgaccggag gtcttctgaa aagccgagta gataaggaat tggcgagcct gaccacagct 5701 cagagacagc ggtatgaaat aactagacaa aatctaggca aaactgctgc tcaggattac 5761 ttacggaaat gtaaggaggg tagtaaatag tctaagctct acgactttaa aataacgagc 5821 acactgaact ccaagcctgt tagagtataa cccaggtcgt cattagctgt agacgttaaa 5881 ccagcggtcc agtgtcgatg gctgtaagac actgagtaat tcacagcaac gaaaaccgaa 5941 gtctgagtag gtgagtaggc atcataattc ttagggtagg ggggtgtata gatacccccc 6001 cctggtctat gatgt //