File Module Path Sample annotation overview --- /Scripts_Pipeline_SampleAnnotation.html Merged counts table Ab. Exp. /processed_data/aberrant_expression//outrider//total_counts.tsv OUTRIDER full results table Ab. Exp. /processed_results/aberrant_expression//outrider//OUTRIDER_results_all.tsv OUTRIDER significant-only results table Ab. Exp. /processed_results/aberrant_expression//outrider//OUTRIDER_results.tsv Fitted OUTRIDER dataset (ods) object Ab. Exp. /processed_results/aberrant_expression//outrider//ods.Rds Aberrant expression overview webpage Ab. Exp. /aberrant-expression-pipeline_index.html Aberrant expression analysis webpage Ab. Exp. /Scripts_AberrantExpressionAnalysis_Overview.html Aberrant expression analysis script Ab. Exp. /Scripts/AberrantExpressionAnalysis/Overview.R Fitted FRASER dataset (fds) object Ab. Spl. //aberrant_splicing/datasets/savedObjects//fds-object.RDS FRASER significant-only results table Ab. Spl. //aberrant_splicing/results/{dataset}_results.tsv Aberrant splicing overview webpage Ab. Spl. /aberrant-splicing-pipeline_index.html Aberrant splicing analysis webpage Ab. Spl. /Scripts_AberrantSplicingAnalysis_Overview.html Aberrant splicing analysis script Ab. Spl. /Scripts/AberrantSplicingAnalysis/Overview.R MAE individual results MAE /processed_results/mae/samples{DNA_ID}--{RNA_ID}_res.Rds MAE full results table MAE /processed_results/mae//MAE_results_all_.tsv.gz MAE significant-only results table MAE /processed_results/mae//MAE_results_.tsv MAE overview webpage MAE /aberrant-splicing-pipeline_index.html MAE analysis webpage MAE /Scripts_MAEAnalysis_Overview.html MAE analysis script MAE /Scripts/MAEAnalysis/Overview.R