Tumor_Sample_Barcode Hugo_Symbol Chromosome Start_Position End_Position Reference_Allele Tumor_Seq_Allele2 cancer_cell_frac ccf_CI95_low ccf_CI95_high Variant_Type clonal.ix Variant_Classification t_depth VAF subclonal.ix TCGA-CD-A48C-01 NRXN1 chr2 50545423 50538549 C A 1 0.911606128650684 1 DEL 0 Silent 121 0.545454545454545 0 TCGA-CD-A48C-01 CNTNAP5 chr2 124651712 124647941 G A 0.95 0.330144225102849 0.988316237627298 DEL 1 Missense_Mutation 12 0.333333333333333 0 TCGA-CD-A48C-01 LRP1B chr2 140461529 140456516 G T 0.41 0.233034920957397 0.685611951748513 DEL 0 Nonsense_Mutation 76 0.144736842105263 1 TCGA-CD-A48C-01 LRP1B chr2 140844042 140840951 T G 0.66 0.429439966271114 0.920235956675985 DEL 0 Nonsense_Mutation 83 0.228915662650602 1 TCGA-CD-A48C-01 TTN chr2 178558063 178548531 G T 0.86 0.712257180097156 0.979146707644493 DEL 0 Nonsense_Mutation 300 0.3 1 TCGA-CD-A48C-01 TTN chr2 178611624 178603983 C T 1 0.868182622205758 1 DEL 1 Missense_Mutation 258 0.383720930232558 0 TCGA-CD-A48C-01 DNAH7 chr2 195841239 195834329 G T 0.48 0.270182779579461 0.779992257247921 DEL 0 Nonsense_Mutation 66 0.166666666666667 1 TCGA-CD-A48C-01 DNAH5 chr5 13767801 13762743 G C 0.85 0.532094677220013 0.988239487192406 DEL 1 Missense_Mutation 103 0.174757281553398 0 TCGA-CD-A48C-01 COL12A1 chr6 75096236 75095176 T C 0.72 0.38231717358788 0.975321852977992 DEL 0 Nonsense_Mutation 36 0.25 1 TCGA-CD-A48C-01 CSMD1 chr8 3716520 3708474 A C 0.38 0.162649501050911 0.774380660873009 DEL 0 Nonsense_Mutation 38 0.131578947368421 1 TCGA-CD-A48C-01 ZFHX4 chr8 76855771 76855614 G A 1 0.862241195651898 1 DEL 1 Missense_Mutation 62 0.580645161290323 0 TCGA-CD-A48C-01 CSMD3 chr8 112265413 112263726 A T 0.35 0.17097799721988 0.661769517463749 DEL 0 Nonsense_Mutation 57 0.12280701754386 1 TCGA-CD-A48C-01 CUBN chr10 17094667 17085609 A C 0.84 0.565181221211615 0.986532777481405 DEL 1 Missense_Mutation 111 0.216216216216216 0 TCGA-CD-A48C-01 PCDH15 chr10 53944126 53940955 A C 1 0.694594232572178 1 DEL 1 Missense_Mutation 38 0.447368421052632 0 TCGA-CD-A48C-01 AHNAK2 chr14 104963026 104954985 T C 1 0.781363252815815 1 DEL 1 Missense_Mutation 25 0.76 0 TCGA-CD-A48C-01 TP53 chr17 7675481 7673806 C T 1 0.82646642214529 1 DEL 1 Missense_Mutation 30 0.733333333333333 0 TCGA-CD-A48C-01 DNAH17 chr17 78540820 78537393 C T 1 0.594500968470107 1 DEL 1 Missense_Mutation 26 0.423076923076923 0 TCGA-CD-A48C-01 EPB41L3 chr18 5423779 5419827 A C 1 0.717418752506829 1 DEL 1 Missense_Mutation 60 0.4 0 TCGA-CD-A48C-01 ZNF536 chr19 30447309 30444704 G A 0.88 0.688249939539533 0.989448820155403 DEL 1 Missense_Mutation 172 0.308139534883721 0 TCGA-CD-5800-01 XIRP2 chr2 167245837 167243577 G T 0.77 0.413796895492172 0.983082096853042 DEL 0 Nonsense_Mutation 66 0.151515151515152 1 TCGA-CD-5800-01 TTN chr2 178625141 178618266 C T 0.82 0.54991451360517 0.984874016671792 DEL 0 Nonsense_Mutation 150 0.16 1 TCGA-CD-5800-01 PIK3CA chr3 179228011 179219622 G A 0.69 0.309159167717438 0.977503555751213 DEL 0 Nonsense_Mutation 53 0.113207547169811 1 TCGA-CD-5800-01 SYNE1 chr6 152326794 152321362 C T 0.67 0.28027977811221 0.97631821562448 DEL 0 Nonsense_Mutation 38 0.131578947368421 1 TCGA-CD-5800-01 RP1 chr8 54636362 54626557 C T 0.69 0.306667501565471 0.977320703033415 DEL 0 Nonsense_Mutation 62 0.0967741935483871 1 TCGA-CD-5800-01 TRPA1 chr8 72074057 72065488 G A 0.97 0.483057106222511 1 DEL 1 Missense_Mutation 73 0.136986301369863 0 TCGA-CD-5800-01 ZFHX4 chr8 76857493 76852797 T G 0.4 0.170450515746297 0.841679262828522 DEL 0 Nonsense_Mutation 77 0.0649350649350649 1 TCGA-CD-5800-01 TP53 chr17 7683293 7675208 C A 1 0.759763909712952 1 DEL 1 Missense_Mutation 30 0.533333333333333 0 TCGA-CD-5800-01 ZNF208 chr19 21983286 21973859 G T 0.59 0.311764981056906 0.946212521721691 DEL 0 Nonsense_Mutation 93 0.0967741935483871 1 TCGA-CG-4438-01 COL11A1 chr1 103011992 103004470 C A 1 0.612538441283434 1 DEL 1 Missense_Mutation 44 0.25 0 TCGA-CG-4438-01 HMCN1 chr1 186053944 186053886 A C 1 0.92715432721314 1 DEL 1 Missense_Mutation 96 0.5625 0 TCGA-CG-4438-01 FAT4 chr4 125453067 125449198 G A 1 0.95811576680123 1 DEL 1 Missense_Mutation 125 0.744 0 TCGA-CG-4438-01 PKHD1 chr6 51759620 51754832 T C 1 0.824062235207809 1 DEL 1 Missense_Mutation 145 0.220689655172414 0 TCGA-CG-4438-01 SYNE1 chr6 152445286 152444518 A T 1 0.701879635406175 1 DEL 1 Missense_Mutation 108 0.166666666666667 0 TCGA-CG-4438-01 SYNE1 chr6 152527763 152520527 G A 1 0.83022871320092 1 DEL 1 Missense_Mutation 297 0.154882154882155 0 TCGA-CG-4438-01 SDK1 chr7 4267324 4265272 A T 1 0.274605294152184 0.987811936641377 DEL 1 Missense_Mutation 28 0.107142857142857 0 TCGA-CG-4438-01 NALCN chr13 101069687 101059903 C T 1 0.948599978342675 1 DEL 0 Silent 105 0.704761904761905 0 TCGA-CG-4438-01 TP53 chr17 7676542 7674894 G A 1 0.854007873066881 1 DEL 1 Missense_Mutation 39 0.641025641025641 0 TCGA-CG-4438-01 KIF2B chr17 53832052 53824948 G A 1 0.759647063735879 1 DEL 1 Missense_Mutation 60 0.316666666666667 0 TCGA-CG-4438-01 RYR1 chr19 38531759 38528364 G T 0.56 0.31196336928437 0.915065899643094 DEL 0 Nonsense_Mutation 177 0.0621468926553672 1 TCGA-CG-4438-01 PEG3 chr19 56822947 56813716 G A 1 0.882223774954744 1 DEL 1 Missense_Mutation 91 0.384615384615385 0 TCGA-CG-5718-01 APOB chr2 21023632 21015204 - T 1 0.801046399685002 1 DEL 1 Missense_Mutation 223 0.224215246636771 0 TCGA-CG-5718-01 APC chr5 112837189 112835091 T - 1 0.842868419997601 1 DEL 1 Missense_Mutation 79 0.468354430379747 0 TCGA-CG-5718-01 PCLO chr7 82962907 82955225 C A 0.99 0.594354729988518 1 DEL 1 Missense_Mutation 94 0.191489361702128 0 TCGA-CG-5718-01 RELN chr7 103508385 103500845 C A 1 0.804274773896337 1 DEL 1 Missense_Mutation 347 0.204610951008646 0 TCGA-CG-4436-01 NCKAP5 chr2 132791177 132785196 T G 1 0.756833850893705 1 DEL 1 Missense_Mutation 194 0.149484536082474 0 TCGA-CG-4436-01 XIRP2 chr2 167250490 167246813 C G 1 0.927632921536021 1 DEL 1 Missense_Mutation 165 0.36969696969697 0 TCGA-CG-4436-01 TTN chr2 178581016 178574056 C T 1 0.813770051863714 1 DEL 1 Missense_Mutation 79 0.291139240506329 0 TCGA-CG-4436-01 ERBB4 chr2 211568254 211561997 A G 0.72 0.404364689677447 0.975749367440059 DEL 1 Missense_Mutation 150 0.08 0 TCGA-CG-4436-01 FAT4 chr4 125327022 125319596 T G 1 0.748656670766954 1 DEL 1 Missense_Mutation 189 0.158730158730159 0 TCGA-CG-4436-01 FAT4 chr4 125453576 125449967 T G 0.73 0.360176982057758 0.980130265401123 DEL 1 Missense_Mutation 87 0.0919540229885057 0 TCGA-CG-4436-01 PCLO chr7 82959483 82956721 T G 0.92 0.442198481814603 0.98977528922795 DEL 1 Missense_Mutation 136 0.0661764705882353 0 TCGA-CG-4436-01 RIMS2 chr8 103894561 103885941 T G 1 0.597875905038791 1 DEL 1 Missense_Mutation 117 0.11965811965812 0 TCGA-CG-4436-01 PCDH15 chr10 54671378 54664190 A C 0.72 0.262131511436117 0.980766198402644 DEL 1 Missense_Mutation 44 0.0909090909090909 0 TCGA-CG-4436-01 FAT3 chr11 92807815 92797878 T A 1 0.625695340310455 1 DEL 1 Missense_Mutation 132 0.128787878787879 0 TCGA-CG-4436-01 DNAH3 chr16 21001603 20997417 G A 0.72 0.397594486669763 0.977709819574524 DEL 1 Missense_Mutation 136 0.0808823529411765 0 TCGA-CG-4436-01 TP53 chr17 7677896 7673579 G A 1 0.926023104582067 1 DEL 1 Missense_Mutation 101 0.534653465346535 0 TCGA-CG-4436-01 DNAH17 chr17 78449836 78441086 G A 1 0.574007122311981 1 DEL 1 Missense_Mutation 23 0.304347826086957 0 TCGA-CG-4436-01 PTPRT chr20 42165653 42161373 G T 0.92 0.50321830952098 1 DEL 1 Missense_Mutation 155 0.0838709677419355 0 TCGA-VQ-AA6I-01 COL11A1 chr1 102918574 102914763 C A 1 0.456677965311861 1 DEL 1 Missense_Mutation 16 0.375 0 TCGA-VQ-AA6I-01 USH2A chr1 215734150 215728037 G T 1 0.87421539995796 1 DEL 1 Missense_Mutation 123 0.439024390243902 0 TCGA-VQ-AA6I-01 LRP1B chr2 140984939 140982235 G A 1 0.615114967879676 1 DEL 1 Missense_Mutation 53 0.320754716981132 0 TCGA-VQ-AA6I-01 TTN chr2 178719408 178709658 C A 1 0.795413572511453 1 DEL 1 Missense_Mutation 116 0.362068965517241 0 TCGA-VQ-AA6I-01 PCLO chr7 82963334 82956124 C A 1 0.794649805411004 1 DEL 1 Missense_Mutation 276 0.246376811594203 0 TCGA-VQ-AA6I-01 TP53 chr17 7681890 7673776 G A 1 0.634899355431299 1 DEL 1 Missense_Mutation 24 0.458333333333333 0 TCGA-D7-8570-01 SPTA1 chr1 158657776 158653326 G A 1 0.64726829668916 1 DEL 1 Missense_Mutation 130 0.146153846153846 0 TCGA-D7-8570-01 COL6A3 chr2 237348290 237340485 G A 0.74 0.324004740796228 0.981298397076337 DEL 1 Missense_Mutation 56 0.107142857142857 0 TCGA-D7-8570-01 PCDH10 chr4 133156178 133151243 G T 1 0.699568042423083 1 DEL 1 Missense_Mutation 121 0.181818181818182 0 TCGA-D7-8570-01 GRM5 chr11 89055090 89047850 G C 0.71 0.334525704362672 0.978472442343633 DEL 1 Missense_Mutation 68 0.102941176470588 0 TCGA-D7-8570-01 FAT3 chr11 92839858 92831952 CAGCAAAGATATTGGCACAAATGCTGAGAT - 1 0.299357426826404 0.989601853759539 DEL 1 Missense_Mutation 16 0.1875 0 TCGA-D7-8570-01 NBEA chr13 35164107 35157093 GTGT - 0.88 0.569207859555372 1 DEL 1 Missense_Mutation 172 0.127906976744186 0 TCGA-D7-8570-01 DNAH9 chr17 11872160 11871622 G A 1 0.620306770789178 1 DEL 1 Missense_Mutation 124 0.153225806451613 0 TCGA-BR-A4PE-01 ARID1A chr1 26780490 26773851 ACCCCTTCTGGCA - 0.89 0.659560834164236 1 DEL 1 Missense_Mutation 190 0.221052631578947 0 TCGA-BR-A4PE-01 FLG chr1 152310086 152306584 C G 0.36 0.276721455469211 0.460284280697974 DEL 0 Nonsense_Mutation 944 0.0603813559322034 1 TCGA-BR-A4PE-01 FLG2 chr1 152352760 152350931 C A 1 0.765017315681173 1 DEL 1 Missense_Mutation 282 0.177304964539007 0 TCGA-BR-A4PE-01 HMCN1 chr1 186135367 186132377 T A 1 0.535356813075965 1 DEL 1 Missense_Mutation 24 0.291666666666667 0 TCGA-BR-A4PE-01 CNTNAP5 chr2 124774555 124773017 G T 0.59 0.324054976174545 0.941933521927439 DEL 0 Nonsense_Mutation 101 0.099009900990099 1 TCGA-BR-A4PE-01 LRP1B chr2 140254245 140247115 T C 1 0.456080513166707 1 DEL 1 Missense_Mutation 27 0.222222222222222 0 TCGA-BR-A4PE-01 XIRP2 chr2 167254366 167244906 G C 1 0.606143124683413 1 DEL 1 Missense_Mutation 54 0.222222222222222 0 TCGA-BR-A4PE-01 TTN chr2 178581270 178580441 G C 0.71 0.337553522365432 0.9787960896871 DEL 1 Missense_Mutation 59 0.11864406779661 0 TCGA-BR-A4PE-01 TTN chr2 178640235 178634575 C T 0.9 0.553538348670566 1 DEL 1 Missense_Mutation 120 0.15 0 TCGA-BR-A4PE-01 CTNND2 chr5 11028620 11022802 T G 1 0.738590742401564 1 DEL 1 Missense_Mutation 47 0.361702127659574 0 TCGA-BR-A4PE-01 CSMD1 chr8 3230839 3230069 A C 1 0.611631189378669 1 DEL 1 Missense_Mutation 45 0.266666666666667 0 TCGA-BR-A4PE-01 PREX2 chr8 68058210 68055852 A C 1 0.599901439260166 1 DEL 1 Missense_Mutation 33 0.303030303030303 0 TCGA-BR-A4PE-01 TRPA1 chr8 72035200 72034261 A G 1 0.497667058730908 1 DEL 1 Missense_Mutation 34 0.235294117647059 0 TCGA-BR-A4PE-01 CSMD3 chr8 112566027 112556801 T A 0.9 0.441916621770297 0.989331244281214 DEL 1 Missense_Mutation 70 0.128571428571429 0 TCGA-BR-A4PE-01 CDH23 chr10 71679135 71677685 C T 1 0.330708174297865 1 DEL 1 Missense_Mutation 9 0.333333333333333 0 TCGA-BR-A4PE-01 TENM4 chr11 78670542 78670491 G A 1 0.848053043961266 1 DEL 1 Missense_Mutation 58 0.482758620689655 0 TCGA-BR-A4PE-01 FAT3 chr11 92362498 92355224 C T 1 0.44590743979172 1 DEL 1 Missense_Mutation 33 0.212121212121212 0 TCGA-BR-A4PE-01 DCLK1 chr13 35861305 35854505 - CC 1 0.51155508359613 1 DEL 1 Missense_Mutation 47 0.191489361702128 0 TCGA-BR-A4PE-01 TP53 chr17 7681162 7675206 G C 1 0.848398821271495 1 DEL 1 Missense_Mutation 37 0.675675675675676 0 TCGA-BR-A4PE-01 MUC16 chr19 8962067 8953808 - A 0.83 0.329121135088556 0.985773574520035 DEL 1 Missense_Mutation 30 0.166666666666667 0 TCGA-BR-8373-01 DNAH5 chr5 13721821 13716569 A G 1 0.633129788031137 1 DEL 1 Missense_Mutation 60 0.2 0 TCGA-BR-8373-01 PTPRT chr20 42083887 42081963 C T 1 0.716987598379876 1 DEL 1 Missense_Mutation 120 0.208333333333333 0 TCGA-BR-4294-01 TAF1L chr9 32633778 32631712 C T 1 0.911837219680473 1 DEL 1 Missense_Mutation 153 0.418300653594771 0 TCGA-BR-4294-01 MUC16 chr19 8978577 8974990 G T 1 0.907886898652488 1 DEL 1 Missense_Mutation 160 0.4 0 TCGA-CG-4441-01 TTN chr2 178738486 178729299 A C 1 0.851410569555639 1 DEL 1 Missense_Mutation 145 0.227586206896552 0 TCGA-CG-4441-01 DNAH5 chr5 13793174 13786208 A G 1 0.595917739852597 1 DEL 1 Missense_Mutation 47 0.191489361702128 0 TCGA-CG-4441-01 NAV3 chr12 78124597 78119243 C T 1 0.900330960422806 1 DEL 1 Missense_Mutation 182 0.263736263736264 0 TCGA-CG-4441-01 DSEL chr18 67515208 67511076 T G 1 0.762548390520594 1 DEL 1 Missense_Mutation 53 0.30188679245283 0 TCGA-CG-4441-01 PTPRT chr20 42796980 42791416 G T 1 0.687678601069103 1 DEL 1 Missense_Mutation 39 0.282051282051282 0 TCGA-VQ-A8DL-01 FLG2 chr1 152359307 152355228 C A 0.85 0.684008409301798 0.979743316983063 DEL 1 Missense_Mutation 355 0.214084507042254 0 TCGA-VQ-A8DL-01 PCDH10 chr4 133159210 133151164 - TT 0.71 0.447473786912025 0.964245908810995 DEL 0 Nonsense_Mutation 95 0.178947368421053 1 TCGA-VQ-A8DL-01 LRRK2 chr12 40235092 40225614 - G 1 0.778585520805783 1 DEL 1 Missense_Mutation 43 0.465116279069767 0 TCGA-VQ-A8DL-01 LRRK2 chr12 40226136 40225614 T A 1 0.775201569900324 1 DEL 1 Missense_Mutation 44 0.454545454545455 0 TCGA-VQ-A8DL-01 PCDH17 chr13 57636236 57634341 C T 0.89 0.44858410570116 0.989159176433399 DEL 1 Missense_Mutation 40 0.225 0 TCGA-VQ-A8DL-01 AHNAK2 chr14 104948122 104938723 C A 0.75 0.276466710627581 0.982087521949808 DEL 1 Missense_Mutation 21 0.19047619047619 0 TCGA-VQ-A8DL-01 TP53 chr17 7681231 7674248 TT - 0.66 0.35613921986803 0.964788287673682 DEL 0 Nonsense_Mutation 40 0.225 1 TCGA-EQ-8122-01 COL11A1 chr1 102885093 102883309 C T 0.95 0.438864242571144 1 DEL 1 Missense_Mutation 52 0.153846153846154 0 TCGA-EQ-8122-01 COL11A1 chr1 103024365 103014520 C A 1 0.683677697777866 1 DEL 1 Missense_Mutation 35 0.342857142857143 0 TCGA-EQ-8122-01 HMCN1 chr1 186112939 186108592 - TTACAGGTAAATTTT 0.99 0.316584675139189 0.988207939121541 DEL 1 Missense_Mutation 37 0.108108108108108 0 TCGA-EQ-8122-01 RYR2 chr1 237788124 237784631 C T 1 0.838726388575373 1 DEL 1 Missense_Mutation 92 0.293478260869565 0 TCGA-EQ-8122-01 PXDN chr2 1653979 1648983 G A 1 0.78011822437364 1 DEL 1 Missense_Mutation 66 0.303030303030303 0 TCGA-EQ-8122-01 NRXN1 chr2 51033659 51028020 C T 1 0.774878323733963 1 DEL 1 Missense_Mutation 26 0.576923076923077 0 TCGA-EQ-8122-01 TTN chr2 178570561 178567878 G A 0.71 0.462359892936594 0.962332520460613 DEL 0 Nonsense_Mutation 243 0.0864197530864197 1 TCGA-EQ-8122-01 MAP2 chr2 209697798 209694190 C A 0.87 0.46314474489791 0.988886661928333 DEL 1 Missense_Mutation 103 0.106796116504854 0 TCGA-EQ-8122-01 FAT2 chr5 151509167 151505818 G T 1 0.880237761765015 1 DEL 1 Missense_Mutation 177 0.265536723163842 0 TCGA-EQ-8122-01 COL12A1 chr6 75167512 75165692 C T 0.93 0.497925558096812 1 DEL 1 Missense_Mutation 118 0.101694915254237 0 TCGA-EQ-8122-01 CSMD1 chr8 2951383 2950317 A C 1 0.731050159858918 1 DEL 1 Missense_Mutation 102 0.205882352941176 0 TCGA-EQ-8122-01 DYNC2H1 chr11 103295723 103286271 T C 1 0.90929934459871 1 DEL 1 Missense_Mutation 293 0.218430034129693 0 TCGA-EQ-8122-01 DCLK1 chr13 35805849 35805775 A T 1 0.865958637004976 1 DEL 1 Missense_Mutation 108 0.314814814814815 0 TCGA-EQ-8122-01 DCLK1 chr13 36117980 36112181 G C 0.82 0.393125849827425 0.98599974482335 DEL 1 Missense_Mutation 80 0.1 0 TCGA-EQ-8122-01 TP53 chr17 7681026 7673823 C - 1 0.747154371169983 1 DEL 1 Missense_Mutation 29 0.482758620689655 0 TCGA-VQ-A8P3-01 FLG chr1 152311068 152307288 C T 1 0.926782072643042 1 DEL 1 Missense_Mutation 322 0.251552795031056 0 TCGA-VQ-A8P3-01 FMN2 chr1 240392801 240392539 T G 1 0.567480433263507 1 DEL 1 Missense_Mutation 116 0.129310344827586 0 TCGA-VQ-A8P3-01 LRP1B chr2 140324815 140315087 T G 1 0.682801146614159 1 DEL 1 Missense_Mutation 53 0.245283018867925 0 TCGA-VQ-A8P3-01 XIRP2 chr2 167255422 167254033 A C 1 0.823011863491782 1 DEL 1 Missense_Mutation 72 0.333333333333333 0 TCGA-VQ-A8P3-01 TTN chr2 178784318 178774932 A C 1 0.705326454633777 1 DEL 1 Missense_Mutation 64 0.234375 0 TCGA-VQ-A8P3-01 ERBB4 chr2 211395466 211387064 T G 1 0.837620810929805 1 DEL 1 Missense_Mutation 128 0.25 0 TCGA-VQ-A8P3-01 ABCA12 chr2 215050251 215045952 A C 1 0.810649645144557 1 DEL 1 Missense_Mutation 84 0.285714285714286 0 TCGA-VQ-A8P3-01 SCN10A chr3 38762308 38755879 T A 1 0.872699845516643 1 DEL 1 Missense_Mutation 163 0.257668711656442 0 TCGA-VQ-A8P3-01 SCN10A chr3 38797863 38793817 T G 1 0.872735631685962 1 DEL 1 Missense_Mutation 102 0.343137254901961 0 TCGA-VQ-A8P3-01 FAT4 chr4 125497994 125490830 A C 1 0.72066311283132 1 DEL 1 Missense_Mutation 57 0.263157894736842 0 TCGA-VQ-A8P3-01 DNAH5 chr5 13874510 13871662 G C 1 0.72822861830384 1 DEL 1 Missense_Mutation 83 0.216867469879518 0 TCGA-VQ-A8P3-01 PKHD1 chr6 51637056 51632663 T G 1 0.736074514807771 1 DEL 1 Missense_Mutation 69 0.246376811594203 0 TCGA-VQ-A8P3-01 COL12A1 chr6 75152749 75148358 T G 1 0.764436608421972 1 DEL 1 Missense_Mutation 72 0.263888888888889 0 TCGA-VQ-A8P3-01 SYNE1 chr6 152324459 152318106 T C 1 0.884987133883542 1 DEL 1 Missense_Mutation 172 0.267441860465116 0 TCGA-VQ-A8P3-01 SYNE1 chr6 152331843 152331441 A C 1 0.720604792155446 1 DEL 1 Missense_Mutation 67 0.238805970149254 0 TCGA-VQ-A8P3-01 SYNE1 chr6 152461369 152455529 T G 1 0.810198313678584 1 DEL 1 Missense_Mutation 112 0.241071428571429 0 TCGA-VQ-A8P3-01 CSMD1 chr8 3214792 3205515 G - 1 0.501531503288467 1 DEL 1 Missense_Mutation 25 0.24 0 TCGA-VQ-A8P3-01 RP1 chr8 54629292 54621385 A G 1 0.802873295111926 1 DEL 1 Missense_Mutation 63 0.333333333333333 0 TCGA-VQ-A8P3-01 CSMD3 chr8 112647931 112638732 A G 1 0.871651337787062 1 DEL 1 Missense_Mutation 78 0.41025641025641 0 TCGA-VQ-A8P3-01 TG chr8 132922724 132919379 A G 1 0.716209410731641 1 DEL 1 Missense_Mutation 39 0.333333333333333 0 TCGA-VQ-A8P3-01 PCDH15 chr10 54135334 54132900 A C 1 0.450322746313095 1 DEL 1 Missense_Mutation 22 0.227272727272727 0 TCGA-VQ-A8P3-01 FAT3 chr11 92808628 92799156 A G 1 0.625146782169092 1 DEL 1 Missense_Mutation 30 0.3 0 TCGA-VQ-A8P3-01 ABCC9 chr12 21938870 21936569 A C 1 0.822929715957027 1 DEL 1 Missense_Mutation 63 0.365079365079365 0 TCGA-VQ-A8P3-01 LRRK2 chr12 40324577 40320039 T G 1 0.847771029611878 1 DEL 1 Missense_Mutation 115 0.278260869565217 0 TCGA-VQ-A8P3-01 TMEM132D chr12 129089368 129084575 A C 1 0.544430629928258 1 DEL 1 Missense_Mutation 40 0.2 0 TCGA-VQ-A8P3-01 NBEA chr13 35042392 35041106 A C 1 0.658537282616071 1 DEL 1 Missense_Mutation 41 0.268292682926829 0 TCGA-VQ-A8P3-01 DSEL chr18 67514098 67513029 T C 0.55 0.251905041378243 0.950514969535422 DEL 1 Missense_Mutation 86 0.0697674418604651 0 TCGA-VQ-A8P3-01 DSEL chr18 67522460 67513225 T G 1 0.825977216600697 1 DEL 1 Missense_Mutation 78 0.320512820512821 0 TCGA-VQ-A8P3-01 DSEL chr18 67519674 67513455 A C 1 0.856751355796593 1 DEL 1 Missense_Mutation 111 0.297297297297297 0 TCGA-VQ-A8P3-01 MUC16 chr19 8982605 8973032 T G 1 0.885758766813936 1 DEL 1 Missense_Mutation 110 0.354545454545455 0 TCGA-VQ-A8P3-01 PTPRT chr20 42103018 42098437 T G 1 0.791270421362633 1 DEL 1 Missense_Mutation 63 0.317460317460317 0 TCGA-BR-8485-01 SPTA1 chr1 158624315 158620405 T G 1 0.83856218439405 1 DEL 1 Missense_Mutation 63 0.396825396825397 0 TCGA-BR-8485-01 HMCN1 chr1 186145681 186136893 A C 1 0.892172382618196 1 DEL 1 Missense_Mutation 135 0.325925925925926 0 TCGA-BR-8485-01 USH2A chr1 216094119 216084767 T G 1 0.881135725206511 1 DEL 1 Missense_Mutation 118 0.330508474576271 0 TCGA-BR-8485-01 FMN2 chr1 240213837 240211232 A C 1 0.744515920742243 1 DEL 1 Missense_Mutation 63 0.26984126984127 0 TCGA-BR-8485-01 NRXN1 chr2 50558268 50552794 A C 1 0.698858982455921 1 DEL 1 Missense_Mutation 95 0.189473684210526 0 TCGA-BR-8485-01 LRP1B chr2 140446954 140442581 G A 1 0.887417361445752 1 DEL 1 Missense_Mutation 96 0.395833333333333 0 TCGA-BR-8485-01 TTN chr2 178630553 178620739 T G 1 0.75599161512253 1 DEL 1 Missense_Mutation 141 0.184397163120567 0 TCGA-BR-8485-01 TTN chr2 178741056 178738334 C T 1 0.820070894556323 1 DEL 1 Missense_Mutation 47 0.446808510638298 0 TCGA-BR-8485-01 ERBB4 chr2 211387162 211384054 A G 1 0.584629405500999 1 DEL 1 Missense_Mutation 85 0.152941176470588 0 TCGA-BR-8485-01 ABCA12 chr2 214991793 214990871 G A 1 0.886265937954686 1 DEL 1 Missense_Mutation 90 0.411111111111111 0 TCGA-BR-8485-01 CTNND2 chr5 11107835 11098595 A C 1 0.594225951540424 1 DEL 1 Missense_Mutation 93 0.150537634408602 0 TCGA-BR-8485-01 DNAH5 chr5 13722563 13717421 T C 1 0.711177290752963 1 DEL 1 Missense_Mutation 60 0.25 0 TCGA-BR-8485-01 DNAH5 chr5 13758446 13751220 A C 0.9 0.396856176615374 0.988466720299177 DEL 1 Missense_Mutation 60 0.116666666666667 0 TCGA-BR-8485-01 DNAH5 chr5 13828171 13824293 A C 1 0.569802776683493 1 DEL 1 Missense_Mutation 67 0.164179104477612 0 TCGA-BR-8485-01 DNAH5 chr5 13869270 13864422 A C 1 0.538486789251634 1 DEL 1 Missense_Mutation 64 0.15625 0 TCGA-BR-8485-01 ADGRV1 chr5 90661285 90653491 G C 1 0.545450306712805 1 DEL 1 Missense_Mutation 30 0.266666666666667 0 TCGA-BR-8485-01 ADGRV1 chr5 90785525 90783918 T C 1 0.4867718131514 1 DEL 1 Missense_Mutation 12 0.416666666666667 0 TCGA-BR-8485-01 PKHD1 chr6 51798197 51791338 A G 1 0.595136339591183 1 DEL 1 Missense_Mutation 104 0.134615384615385 0 TCGA-BR-8485-01 SYNE1 chr6 152239807 152236297 T G 1 0.514284962874395 1 DEL 1 Missense_Mutation 34 0.205882352941176 0 TCGA-BR-8485-01 SYNE1 chr6 152401871 152401243 T G 1 0.527403907857223 1 DEL 1 Missense_Mutation 55 0.163636363636364 0 TCGA-BR-8485-01 DNAH11 chr7 21594748 21589390 A C 1 0.716124639247765 1 DEL 1 Missense_Mutation 48 0.291666666666667 0 TCGA-BR-8485-01 GLI3 chr7 41966597 41966278 T G 1 0.763948932507781 1 DEL 1 Missense_Mutation 80 0.25 0 TCGA-BR-8485-01 ABCA13 chr7 48275963 48272486 A C 1 0.735806666873903 1 DEL 1 Missense_Mutation 58 0.275862068965517 0 TCGA-BR-8485-01 ABCA13 chr7 48280859 48273535 A C 1 0.433376418843541 1 DEL 1 Missense_Mutation 11 0.363636363636364 0 TCGA-BR-8485-01 PREX2 chr8 68120209 68115872 T C 1 0.681882614965383 1 DEL 1 Missense_Mutation 126 0.150793650793651 0 TCGA-BR-8485-01 RIMS2 chr8 104253995 104249556 T C 1 0.383636225950745 1 DEL 1 Missense_Mutation 38 0.131578947368421 0 TCGA-BR-8485-01 TAF1L chr9 32639983 32630784 A C 1 0.791150999839012 1 DEL 1 Missense_Mutation 63 0.349206349206349 0 TCGA-BR-8485-01 TAF1L chr9 32636949 32632467 T C 1 0.793807868313943 1 DEL 1 Missense_Mutation 242 0.202479338842975 0 TCGA-BR-8485-01 CUBN chr10 16931435 16928292 A C 1 0.600869729901378 1 DEL 1 Missense_Mutation 69 0.173913043478261 0 TCGA-BR-8485-01 GRM5 chr11 88529712 88525319 T G 1 0.894926054480541 1 DEL 0 Silent 325 0.224615384615385 0 TCGA-BR-8485-01 ABCC9 chr12 21876951 21872722 T G 1 0.675300419619364 1 DEL 1 Missense_Mutation 154 0.162337662337662 0 TCGA-BR-8485-01 LRRK2 chr12 40275172 40274941 T G 1 0.488410401175609 1 DEL 1 Missense_Mutation 35 0.2 0 TCGA-BR-8485-01 DNAH3 chr16 20972816 20963812 A G 0.65 0.385260120117926 0.950468288457399 DEL 0 Nonsense_Mutation 145 0.096551724137931 1 TCGA-BR-8485-01 MUC16 chr19 8953711 8947966 T C 1 0.483008591707109 1 DEL 1 Missense_Mutation 36 0.194444444444444 0 TCGA-BR-8485-01 MUC16 chr19 8977110 8972572 T C 1 0.398485599327129 1 DEL 1 Missense_Mutation 15 0.266666666666667 0 TCGA-BR-7196-01 ARID1A chr1 26741236 26731573 CTGC - 0.62 0.410842111353643 0.89723700042848 DEL 0 Nonsense_Mutation 263 0.0836501901140684 1 TCGA-BR-7196-01 ARID1A chr1 26773718 26771203 C T 1 0.521036774314885 1 DEL 1 Missense_Mutation 78 0.141025641025641 0 TCGA-BR-7196-01 PIK3CA chr3 179207717 179203765 T A 1 0.624349546844228 1 DEL 1 Missense_Mutation 102 0.147058823529412 0 TCGA-BR-7196-01 DNAH5 chr5 13705440 13701407 G T 0.5 0.253194561922114 0.893884660315285 DEL 0 Nonsense_Mutation 119 0.0672268907563025 1 TCGA-BR-7196-01 SLITRK5 chr13 87686004 87676386 G A 0.78 0.4659866320566 0.982592931156541 DEL 1 Missense_Mutation 143 0.104895104895105 0 TCGA-BR-7196-01 AHNAK2 chr14 104957587 104948810 G A 0.61 0.342794930039299 0.948165895977597 DEL 0 Nonsense_Mutation 133 0.0827067669172932 1 TCGA-CD-8525-01 XIRP2 chr2 167253933 167248590 G C 1 0.513251574740161 1 DEL 1 Missense_Mutation 78 0.115384615384615 0 TCGA-CD-8525-01 RP1 chr8 54621413 54621111 G A 1 0.886961485175038 1 DEL 1 Missense_Mutation 121 0.31404958677686 0 TCGA-CD-8525-01 TP53 chr17 7676813 7674872 T C 1 0.824710616772628 1 DEL 0 Silent 37 0.540540540540541 0 TCGA-CD-8526-01 TTN chr2 178776886 178776525 G A 1 0.595227262469124 1 DEL 1 Missense_Mutation 134 0.134328358208955 0 TCGA-CD-8526-01 UTRN chr6 144537994 144537645 G C 1 0.611310472314731 1 DEL 1 Missense_Mutation 54 0.203703703703704 0 TCGA-CD-8526-01 FAM135B chr8 138255300 138250898 G T 1 0.810619641582348 1 DEL 1 Missense_Mutation 139 0.20863309352518 0 TCGA-CD-8526-01 NALCN chr13 101061805 101055327 C T 0.76 0.404529156218884 0.982005242116574 DEL 1 Missense_Mutation 86 0.116279069767442 0 TCGA-CD-8526-01 TP53 chr17 7676406 7673806 C T 1 0.621348480889112 1 DEL 1 Missense_Mutation 30 0.3 0 TCGA-D7-6519-01 HMCN1 chr1 186096168 186088006 T A 0.57 0.303547924341057 0.935276787643237 DEL 0 Nonsense_Mutation 82 0.109756097560976 1 TCGA-D7-6519-01 GLI3 chr7 41972668 41965447 G T 1 0.861314881795304 1 DEL 1 Missense_Mutation 77 0.428571428571429 0 TCGA-D7-A4Z0-01 COL11A1 chr1 102992898 102984184 A T 1 0.420346066718914 1 DEL 1 Missense_Mutation 37 0.162162162162162 0 TCGA-D7-A4Z0-01 SPTA1 chr1 158617959 158615292 A C 1 0.77490902291139 1 DEL 1 Missense_Mutation 224 0.174107142857143 0 TCGA-D7-A4Z0-01 SPTA1 chr1 158645718 158642507 T G 1 0.740376057812735 1 DEL 1 Missense_Mutation 94 0.223404255319149 0 TCGA-D7-A4Z0-01 HMCN1 chr1 186062829 186057396 T G 1 0.618261761626093 1 DEL 1 Missense_Mutation 106 0.160377358490566 0 TCGA-D7-A4Z0-01 HMCN1 chr1 186157173 186153760 A C 1 0.747176380544352 1 DEL 1 Missense_Mutation 99 0.222222222222222 0 TCGA-D7-A4Z0-01 FMN2 chr1 240214984 240207133 A G 0.7 0.331799410548299 0.977766644829195 DEL 1 Missense_Mutation 69 0.101449275362319 0 TCGA-D7-A4Z0-01 FMN2 chr1 240393164 240392535 A G 1 0.726390867406202 1 DEL 1 Missense_Mutation 92 0.217391304347826 0 TCGA-D7-A4Z0-01 CNTNAP5 chr2 124774017 124772919 A T 1 0.65039056228446 1 DEL 1 Missense_Mutation 151 0.152317880794702 0 TCGA-D7-A4Z0-01 THSD7B chr2 137095520 137095103 T G 1 0.549448805748377 1 DEL 1 Missense_Mutation 45 0.2 0 TCGA-D7-A4Z0-01 THSD7B chr2 137414862 137411700 A C 1 0.739611858589968 1 DEL 1 Missense_Mutation 120 0.2 0 TCGA-D7-A4Z0-01 XIRP2 chr2 167256198 167247331 A T 0.67 0.299794605210326 0.975195822188497 DEL 1 Missense_Mutation 62 0.0967741935483871 0 TCGA-D7-A4Z0-01 TTN chr2 178558581 178551173 T G 1 0.628623680346888 1 DEL 1 Missense_Mutation 74 0.189189189189189 0 TCGA-D7-A4Z0-01 TTN chr2 178612776 178607862 A C 0.56 0.285943856756984 0.940499386223406 DEL 0 Nonsense_Mutation 98 0.0816326530612245 1 TCGA-D7-A4Z0-01 TTN chr2 178719008 178714047 T G 1 0.420346066718914 1 DEL 1 Missense_Mutation 37 0.162162162162162 0 TCGA-D7-A4Z0-01 DNAH7 chr2 195915065 195906735 A C 0.87 0.450293754984155 0.98872945809947 DEL 1 Missense_Mutation 79 0.126582278481013 0 TCGA-D7-A4Z0-01 MAP2 chr2 209696805 209696664 A G 1 0.64906415299397 1 DEL 1 Missense_Mutation 77 0.194805194805195 0 TCGA-D7-A4Z0-01 ERBB4 chr2 211386587 211383874 T A 0.77 0.515513636609542 0.977009067543569 DEL 1 Missense_Mutation 216 0.111111111111111 0 TCGA-D7-A4Z0-01 ERBB4 chr2 211567459 211562070 T C 0.97 0.526181957080156 1 DEL 1 Missense_Mutation 93 0.139784946236559 0 TCGA-D7-A4Z0-01 SCN10A chr3 38704941 38697737 T G 0.5 0.255065900626742 0.895971084609035 DEL 0 Nonsense_Mutation 110 0.0727272727272727 1 TCGA-D7-A4Z0-01 FAT4 chr4 125457819 125449667 T G 0.98 0.575034309773084 1 DEL 1 Missense_Mutation 120 0.141666666666667 0 TCGA-D7-A4Z0-01 DNAH5 chr5 13738695 13729476 A C 1 0.615150642264753 1 DEL 1 Missense_Mutation 107 0.158878504672897 0 TCGA-D7-A4Z0-01 DNAH5 chr5 13774887 13769090 T G 1 0.73250000025974 1 DEL 1 Missense_Mutation 295 0.149152542372881 0 TCGA-D7-A4Z0-01 GLI3 chr7 41966927 41966594 G T 0.91 0.547170126495404 1 DEL 1 Missense_Mutation 129 0.131782945736434 0 TCGA-D7-A4Z0-01 PCLO chr7 82916571 82915243 T G 0.79 0.279633366074334 0.983698415742146 DEL 1 Missense_Mutation 35 0.114285714285714 0 TCGA-D7-A4Z0-01 CSMD1 chr8 3411994 3408186 A C 1 0.30004224922241 0.989682290078369 DEL 1 Missense_Mutation 18 0.166666666666667 0 TCGA-D7-A4Z0-01 RP1 chr8 54627024 54624760 C G 0.97 0.441379146810369 1 DEL 1 Missense_Mutation 65 0.123076923076923 0 TCGA-D7-A4Z0-01 RP1 chr8 54634074 54629718 T A 1 0.61365498683167 1 DEL 1 Missense_Mutation 100 0.15 0 TCGA-D7-A4Z0-01 TRPA1 chr8 72039993 72038918 A G 0.74 0.365789063598001 0.981387286265492 DEL 1 Missense_Mutation 85 0.0941176470588235 0 TCGA-D7-A4Z0-01 CSMD3 chr8 112300994 112292648 A G 0.62 0.324323289117948 0.958620840005939 DEL 0 Nonsense_Mutation 115 0.0782608695652174 1 TCGA-D7-A4Z0-01 CSMD3 chr8 112344728 112336731 T C 0.95 0.59582382616933 1 DEL 1 Missense_Mutation 174 0.120689655172414 0 TCGA-D7-A4Z0-01 CSMD3 chr8 112922301 112921667 T A 0.81 0.407837465735824 0.985631905229654 DEL 1 Missense_Mutation 88 0.102272727272727 0 TCGA-D7-A4Z0-01 TRPS1 chr8 115629154 115619595 T G 1 0.6029373528028 1 DEL 1 Missense_Mutation 115 0.139130434782609 0 TCGA-D7-A4Z0-01 TG chr8 132904092 132900274 G A 1 0.532306748097588 1 DEL 1 Missense_Mutation 43 0.186046511627907 0 TCGA-D7-A4Z0-01 FAM135B chr8 138157008 138152774 T - 0.92 0.573313391359678 1 DEL 1 Missense_Mutation 172 0.116279069767442 0 TCGA-D7-A4Z0-01 PCDH15 chr10 53827815 53821982 A C 1 0.676840697033604 1 DEL 1 Missense_Mutation 122 0.172131147540984 0 TCGA-D7-A4Z0-01 TMEM132D chr12 129076811 129074345 T G 1 0.630383444255249 1 DEL 1 Missense_Mutation 102 0.166666666666667 0 TCGA-D7-A4Z0-01 SACS chr13 23334810 23334359 A C 0.8 0.342462414073819 0.984935642096333 DEL 1 Missense_Mutation 74 0.0810810810810811 0 TCGA-D7-A4Z0-01 SACS chr13 23342737 23334361 T G 0.79 0.339320995290391 0.984473511718606 DEL 1 Missense_Mutation 75 0.08 0 TCGA-D7-A4Z0-01 NBEA chr13 35190325 35184005 A G 1 0.728495751207014 1 DEL 1 Missense_Mutation 64 0.234375 0 TCGA-D7-A4Z0-01 SLITRK5 chr13 87685038 87676578 A C 1 0.470967168695764 1 DEL 1 Missense_Mutation 88 0.102272727272727 0 TCGA-D7-A4Z0-01 DNAH3 chr16 20989579 20987390 C T 0.82 0.50197902816605 0.985823849709811 DEL 1 Missense_Mutation 144 0.118055555555556 0 TCGA-D7-A4Z0-01 DNAH9 chr17 11621604 11617596 G A 0.94 0.488504041679163 1 DEL 1 Missense_Mutation 81 0.135802469135802 0 TCGA-D7-A4Z0-01 DNAH9 chr17 11776597 11768511 A C 1 0.597796825280874 1 DEL 1 Missense_Mutation 93 0.161290322580645 0 TCGA-D7-A4Z0-01 KIF2B chr17 53831334 53824812 A T 0.93 0.511716265964935 1 DEL 1 Missense_Mutation 97 0.134020618556701 0 TCGA-D7-A4Z0-01 MUC16 chr19 8952313 8949405 A C 1 0.542716338541879 1 DEL 1 Missense_Mutation 57 0.175438596491228 0 TCGA-D7-A4Z0-01 MUC16 chr19 8956596 8951154 A C 0.92 0.466547948302846 1 DEL 1 Missense_Mutation 75 0.133333333333333 0 TCGA-D7-A4Z0-01 MUC16 chr19 8975677 8965690 T G 1 0.600546732701659 1 DEL 1 Missense_Mutation 102 0.156862745098039 0 TCGA-D7-A4Z0-01 MUC16 chr19 8985390 8976211 A G 1 0.645246293671622 1 DEL 1 Missense_Mutation 153 0.150326797385621 0 TCGA-D7-A4Z0-01 PEG3 chr19 56822844 56815272 T C 0.86 0.483177945941056 0.988379012667954 DEL 1 Missense_Mutation 105 0.123809523809524 0 TCGA-D7-A4Z0-01 PEG3 chr19 56819531 56816512 C A 0.78 0.439020100225281 0.983575016508978 DEL 1 Missense_Mutation 106 0.113207547169811 0 TCGA-D7-A4Z0-01 PEG3 chr19 56826159 56816736 T G 0.81 0.474464207595629 0.985830507220962 DEL 1 Missense_Mutation 119 0.117647058823529 0 TCGA-HU-A4G3-01 ARID1A chr1 26782252 26780370 C T 0.45 0.237898888902471 0.803143280210807 DEL 0 Nonsense_Mutation 101 0.0891089108910891 1 TCGA-HU-A4G3-01 HMCN1 chr1 186120953 186114919 C T 1 0.750393947883264 1 DEL 1 Missense_Mutation 161 0.22360248447205 0 TCGA-HU-A4G3-01 THSD7B chr2 137657520 137656880 G T 0.78 0.440996947666641 0.982994311874061 DEL 0 Nonsense_Mutation 78 0.153846153846154 1 TCGA-HU-A4G3-01 PLXNA4 chr7 132510794 132508552 C T 0.99 0.475111835052847 1 DEL 1 Missense_Mutation 46 0.195652173913043 0 TCGA-HU-A4G3-01 CSMD1 chr8 3192337 3189000 C T 1 0.613134986721711 1 DEL 1 Missense_Mutation 38 0.289473684210526 0 TCGA-HU-A4G3-01 EPB41L3 chr18 5425572 5416275 C A 1 0.588224891402001 1 DEL 1 Missense_Mutation 79 0.20253164556962 0 TCGA-ZA-A8F6-01 DNAH9 chr17 11941274 11934028 G C 0.97 0.556947181878694 1 DEL 1 Missense_Mutation 79 0.189873417721519 0 TCGA-CG-5720-01 FAT4 chr4 125461662 125452241 C A 1 0.852315347719663 1 DEL 1 Missense_Mutation 315 0.320634920634921 0 TCGA-CG-5720-01 DNAH5 chr5 13919802 13919297 G A 0.97 0.811924312696382 1 DEL 1 Missense_Mutation 394 0.291878172588832 0 TCGA-CG-5720-01 ADGRV1 chr5 90702944 90694017 C A 1 0.763491409419525 1 DEL 1 Missense_Mutation 58 0.413793103448276 0 TCGA-CG-5720-01 RIMS1 chr6 72398169 72390717 A G 1 0.617821131982877 1 DEL 1 Missense_Mutation 59 0.305084745762712 0 TCGA-CG-5720-01 PCDH15 chr10 53832231 53823066 G T 0.82 0.665225162565367 0.964426125222485 DEL 0 Nonsense_Mutation 313 0.246006389776358 1 TCGA-FP-7916-01 TTN chr2 178558639 178552881 C G 1 0.56253987073952 1 DEL 1 Missense_Mutation 25 0.28 0 TCGA-FP-7916-01 TTN chr2 178590073 178589744 G T 0.67 0.361073648431852 0.969778561352137 DEL 1 Missense_Mutation 126 0.0793650793650794 0 TCGA-FP-7916-01 PIK3CA chr3 179234964 179234297 A G 1 0.715583072904314 1 DEL 1 Missense_Mutation 45 0.288888888888889 0 TCGA-FP-7916-01 DST chr6 56650505 56640592 G A 1 0.503723293825604 1 DEL 1 Missense_Mutation 53 0.150943396226415 0 TCGA-FP-7916-01 NAV3 chr12 78013055 78006839 G T 1 0.831229369983325 1 DEL 1 Missense_Mutation 83 0.301204819277108 0 TCGA-BR-6458-01 SPTA1 chr1 158658032 158649926 A - 1 0.777457882269259 1 DEL 1 Missense_Mutation 58 0.327586206896552 0 TCGA-BR-6458-01 APOB chr2 21040064 21033512 T C 0.98 0.626078018840743 1 DEL 1 Missense_Mutation 141 0.163120567375887 0 TCGA-BR-6458-01 NEB chr2 151618699 151614436 T A 1 0.861389125925922 1 DEL 1 Missense_Mutation 343 0.236151603498542 0 TCGA-BR-6458-01 FAT4 chr4 125472424 125468674 A T 1 0.639212860683038 1 DEL 1 Missense_Mutation 74 0.22972972972973 0 TCGA-BR-6458-01 FAT4 chr4 125491580 125490228 T A 0.94 0.547211025398556 1 DEL 1 Missense_Mutation 80 0.1875 0 TCGA-BR-6458-01 CTNND2 chr5 11368351 11364840 A C 1 0.646957212936021 1 DEL 1 Missense_Mutation 142 0.169014084507042 0 TCGA-BR-6458-01 DNAH5 chr5 13729880 13729539 T G 0.88 0.435302986925692 0.988548228428831 DEL 1 Missense_Mutation 62 0.145161290322581 0 TCGA-BR-6458-01 DNAH5 chr5 13752135 13751255 T G 1 0.670609864576632 1 DEL 1 Missense_Mutation 46 0.282608695652174 0 TCGA-BR-6458-01 PKHD1 chr6 51751296 51747853 A G 0.96 0.591177693329016 1 DEL 1 Missense_Mutation 147 0.136054421768707 0 TCGA-BR-6458-01 COL12A1 chr6 75136688 75134812 A C 1 0.635773700093489 1 DEL 1 Missense_Mutation 113 0.176991150442478 0 TCGA-BR-6458-01 UTRN chr6 144455971 144447681 T G 0.87 0.521739410291931 0.989323765655932 DEL 1 Missense_Mutation 111 0.144144144144144 0 TCGA-BR-6458-01 UTRN chr6 144489569 144479926 C T 1 0.852738894193587 1 DEL 1 Missense_Mutation 108 0.324074074074074 0 TCGA-BR-6458-01 UTRN chr6 144512013 144511102 A C 1 0.704512547044066 1 DEL 1 Missense_Mutation 113 0.20353982300885 0 TCGA-BR-6458-01 DNAH11 chr7 21564326 21564213 T G 0.9 0.524079416055821 1 DEL 1 Missense_Mutation 117 0.128205128205128 0 TCGA-BR-6458-01 DNAH11 chr7 21596605 21591276 T G 0.64 0.346333798841339 0.96116343230648 DEL 0 Nonsense_Mutation 110 0.0909090909090909 1 TCGA-BR-6458-01 PCLO chr7 82920458 82916355 T G 0.88 0.71643226672108 0.988899757791196 DEL 1 Missense_Mutation 1601 0.0587133041848844 0 TCGA-BR-6458-01 PREX2 chr8 68105082 68099779 A C 0.58 0.316028264263421 0.933406300680355 DEL 0 Nonsense_Mutation 104 0.0961538461538462 1 TCGA-BR-6458-01 TG chr8 132943731 132941355 A C 0.87 0.605844480801968 0.989277926258349 DEL 1 Missense_Mutation 216 0.143518518518519 0 TCGA-BR-6458-01 GRM5 chr11 89053726 89047568 G A 1 0.627797739621681 1 DEL 1 Missense_Mutation 49 0.244897959183673 0 TCGA-BR-6458-01 NAV3 chr12 78059840 78050988 G A 0.88 0.39485061312981 0.988038382064073 DEL 1 Missense_Mutation 48 0.145833333333333 0 TCGA-BR-6458-01 NAV3 chr12 78189218 78179657 T G 0.96 0.593957048020101 1 DEL 1 Missense_Mutation 126 0.158730158730159 0 TCGA-BR-6458-01 TP53 chr17 7676008 7673802 C T 1 0.742526190056705 1 DEL 0 Silent 21 0.619047619047619 0 TCGA-BR-6458-01 MUC16 chr19 8956365 8948314 T G 0.79 0.562810560764746 0.977189740495981 DEL 1 Missense_Mutation 204 0.156862745098039 0 TCGA-HU-A4HD-01 FLG chr1 152316374 152309391 G A 1 0.990097458318871 1 DEL 0 Silent 659 0.688922610015175 0 TCGA-HU-A4HD-01 HMCN1 chr1 186134924 186130536 T G 0.41 0.188037267289236 0.818719718178409 DEL 0 Nonsense_Mutation 77 0.0779220779220779 1 TCGA-HU-A4HD-01 USH2A chr1 216099387 216097129 G T 1 0.728082600520396 1 DEL 1 Missense_Mutation 39 0.384615384615385 0 TCGA-HU-A4HD-01 LRP2 chr2 169187433 169185527 C T 1 0.599644892947671 1 DEL 1 Missense_Mutation 41 0.292682926829268 0 TCGA-HU-A4HD-01 TTN chr2 178599987 178590296 C G 1 0.653344689040365 1 DEL 1 Missense_Mutation 55 0.290909090909091 0 TCGA-HU-A4HD-01 ADGRV1 chr5 90991307 90985391 GAG - 1 0.627879909102059 1 DEL 1 Missense_Mutation 13 0.615384615384615 0 TCGA-HU-A4HD-01 DOCK2 chr5 169674810 169674307 A G 1 0.626307111584597 1 DEL 1 Missense_Mutation 66 0.257575757575758 0 TCGA-HU-A4HD-01 DST chr6 56631705 56628091 A T 0.8 0.410849962838392 0.984682245926448 DEL 1 Missense_Mutation 48 0.1875 0 TCGA-HU-A4HD-01 ZFHX4 chr8 76857267 76856130 C A 0.86 0.616033349265852 0.988926710856304 DEL 1 Missense_Mutation 386 0.0932642487046632 0 TCGA-HU-A4HD-01 CSMD3 chr8 113099855 113098959 T G 1 0.629076657888797 1 DEL 1 Missense_Mutation 71 0.169014084507042 0 TCGA-HU-A4HD-01 PCDH15 chr10 53970006 53961838 G C 0.85 0.459051161894835 0.987826413563989 DEL 1 Missense_Mutation 68 0.161764705882353 0 TCGA-HU-A4HD-01 CDH23 chr10 71652294 71645903 G A 0.83 0.420180219996497 0.986586253555068 DEL 1 Missense_Mutation 57 0.157894736842105 0 TCGA-HU-A4HD-01 TP53 chr17 7683939 7676153 - G 1 0.950265199994135 1 DEL 1 Missense_Mutation 200 0.505 0 TCGA-HU-A4HD-01 MUC16 chr19 8945450 8936016 G C 0.61 0.368989346183206 0.923736683021776 DEL 0 Nonsense_Mutation 97 0.144329896907216 1 TCGA-IN-8663-01 LRP2 chr2 169277226 169275098 T G 1 0.815129004201626 1 DEL 1 Missense_Mutation 60 0.433333333333333 0 TCGA-IN-8663-01 TTN chr2 178609830 178607408 T G 1 0.845391932297188 1 DEL 1 Missense_Mutation 181 0.303867403314917 0 TCGA-IN-8663-01 SCN10A chr3 38752372 38742426 A C 1 0.928198705531472 1 DEL 1 Missense_Mutation 102 0.598039215686274 0 TCGA-IN-8663-01 PCLO chr7 82961888 82952932 A G 1 0.807036296565387 1 DEL 1 Missense_Mutation 87 0.32183908045977 0 TCGA-IN-8663-01 PCLO chr7 82958608 82955549 T C 1 0.942026815069931 1 DEL 1 Missense_Mutation 166 0.487951807228916 0 TCGA-IN-8663-01 CSMD3 chr8 112929569 112921662 A C 1 0.953544972314789 1 DEL 1 Missense_Mutation 163 0.552147239263804 0 TCGA-IN-8663-01 TRPS1 chr8 115416087 115414665 T C 1 0.963878706246892 1 DEL 1 Missense_Mutation 357 0.38655462184874 0 TCGA-IN-8663-01 CUBN chr10 16916694 16915887 A G 1 0.911743010335449 1 DEL 1 Missense_Mutation 143 0.405594405594406 0 TCGA-IN-8663-01 CUBN chr10 17125268 17123611 - A 1 0.720558731574452 1 DEL 1 Missense_Mutation 41 0.365853658536585 0 TCGA-IN-8663-01 GRM5 chr11 88852606 88850054 G T 1 0.906251603381645 1 DEL 1 Missense_Mutation 51 0.784313725490196 0 TCGA-IN-8663-01 LRRK2 chr12 40309420 40304125 A C 1 0.867045902349576 1 DEL 1 Missense_Mutation 88 0.409090909090909 0 TCGA-IN-8663-01 NBEA chr13 35080228 35070810 A T 1 0.861018232032809 1 DEL 1 Missense_Mutation 104 0.394230769230769 0 TCGA-IN-8663-01 LAMA1 chr18 6981939 6977749 T C 1 0.808151543967917 1 DEL 1 Missense_Mutation 29 0.655172413793103 0 TCGA-IN-8663-01 DCC chr18 53468905 53459243 C T 1 0.651196656429576 1 DEL 1 Missense_Mutation 83 0.253012048192771 0 TCGA-F1-A72C-01 TP53 chr17 7674980 7674918 A G 0.96 0.504618319837111 1 DEL 1 Missense_Mutation 53 0.207547169811321 0 TCGA-F1-A72C-01 SMAD4 chr18 51072727 51067096 C T 0.8 0.503758080128313 0.983252984393144 DEL 1 Missense_Mutation 105 0.171428571428571 0 TCGA-R5-A7ZR-01 FAT2 chr5 151530663 151521714 G T 0.9 0.498537966694786 1 DEL 1 Missense_Mutation 57 0.210526315789474 0 TCGA-R5-A7ZR-01 SYNE1 chr6 152352381 152350624 T C 0.85 0.540954761743624 0.988071172197048 DEL 1 Missense_Mutation 96 0.197916666666667 0 TCGA-R5-A7ZR-01 MUC16 chr19 8960934 8956698 G T 1 0.927825439392855 1 DEL 1 Missense_Mutation 98 0.642857142857143 0 TCGA-CG-5716-01 DNAH5 chr5 13800650 13793709 C T 0.6 0.302548058856066 0.957244955223043 DEL 0 Nonsense_Mutation 122 0.0655737704918033 1 TCGA-CG-5716-01 DCLK1 chr13 35829389 35822835 T C 1 0.581513705956713 1 DEL 1 Missense_Mutation 128 0.1171875 0 TCGA-FP-A9TM-01 LRP1B chr2 140856474 140851686 C G 1 0.86576954778616 1 DEL 1 Missense_Mutation 145 0.275862068965517 0 TCGA-FP-A9TM-01 ADGRB3 chr6 69363008 69361302 C G 0.59 0.270465863566897 0.962801048797985 DEL 0 Nonsense_Mutation 72 0.0833333333333333 1 TCGA-FP-A9TM-01 TRPA1 chr8 72063355 72055777 C T 1 0.36319098844078 0.989515669837685 DEL 1 Missense_Mutation 40 0.125 0 TCGA-FP-A9TM-01 TAF1L chr9 32631349 32631121 G A 1 0.924767376649744 1 DEL 1 Missense_Mutation 229 0.310043668122271 0 TCGA-FP-A9TM-01 TP53 chr17 7679898 7675076 T C 1 0.66572993294047 1 DEL 1 Missense_Mutation 64 0.21875 0 TCGA-FP-A9TM-01 MUC16 chr19 8940134 8938275 G T 1 0.657230405296474 1 DEL 1 Missense_Mutation 86 0.186046511627907 0 TCGA-FP-A9TM-01 MUC16 chr19 8950948 8946604 G A 1 0.673611601647594 1 DEL 1 Missense_Mutation 33 0.333333333333333 0 TCGA-VQ-A91Y-01 AHNAK2 chr14 104950521 104947044 C T 1 0.922875679933069 1 DEL 1 Missense_Mutation 749 0.233644859813084 0 TCGA-CD-A489-01 NRXN1 chr2 50504599 50497553 C T 0.71 0.319407438183631 0.978692741823372 DEL 1 Missense_Mutation 36 0.166666666666667 0 TCGA-CD-A489-01 CNTNAP5 chr2 124802450 124798213 C T 1 0.524952806502137 1 DEL 1 Missense_Mutation 46 0.239130434782609 0 TCGA-CD-A489-01 TTN chr2 178615507 178611944 C T 1 0.571253137859423 1 DEL 1 Missense_Mutation 58 0.241379310344828 0 TCGA-CD-A489-01 COL6A3 chr2 237390162 237381254 C T 0.86 0.686355304958235 0.985463693156219 DEL 1 Missense_Mutation 242 0.264462809917355 0 TCGA-CD-A489-01 PREX2 chr8 68100437 68099764 C A 0.45 0.231705161724785 0.823683635619733 DEL 0 Nonsense_Mutation 75 0.106666666666667 1 TCGA-CD-A489-01 TP53 chr17 7684898 7675076 T C 0.93 0.653304960718249 1 DEL 1 Missense_Mutation 105 0.285714285714286 0 TCGA-BR-6454-01 NRXN1 chr2 50506748 50497676 T A 1 0.804453894585151 1 DEL 1 Missense_Mutation 103 0.252427184466019 0 TCGA-BR-6454-01 XIRP2 chr2 167256110 167247487 G A 1 0.596294936151886 1 DEL 1 Missense_Mutation 58 0.189655172413793 0 TCGA-BR-6454-01 PIK3CA chr3 179239477 179234219 A G 1 0.653917361951625 1 DEL 1 Missense_Mutation 71 0.197183098591549 0 TCGA-BR-6454-01 FAT4 chr4 125450505 125449456 G T 1 0.659175631247398 1 DEL 1 Missense_Mutation 87 0.195402298850575 0 TCGA-BR-6454-01 DNAH5 chr5 13929638 13922235 C T 1 0.764621393356699 1 DEL 1 Missense_Mutation 66 0.272727272727273 0 TCGA-BR-6454-01 TG chr8 132893357 132886576 G T 0.34 0.198289839481062 0.568322777513798 DEL 0 Nonsense_Mutation 246 0.0528455284552846 1 TCGA-BR-6454-01 FAT3 chr11 92810223 92800958 G A 1 0.522694304761105 1 DEL 1 Missense_Mutation 38 0.210526315789474 0 TCGA-BR-6454-01 KIF2B chr17 53834140 53824289 A C 1 0.51629926983647 1 DEL 1 Missense_Mutation 90 0.122222222222222 0 TCGA-BR-6454-01 MUC16 chr19 8966786 8961051 T G 1 0.67826666154434 1 DEL 1 Missense_Mutation 157 0.165605095541401 0 TCGA-MX-A663-01 ARID1A chr1 26782240 26779318 AG - 1 0.842987187243704 1 DEL 1 Missense_Mutation 71 0.352112676056338 0 TCGA-MX-A663-01 SPTA1 chr1 158654642 158653326 G A 0.86 0.457303987124048 0.988496066493527 DEL 1 Missense_Mutation 133 0.0827067669172932 0 TCGA-MX-A663-01 OBSCN chr1 228256365 228250120 C T 1 0.688508284153704 1 DEL 1 Missense_Mutation 173 0.121387283236994 0 TCGA-MX-A663-01 LRP1B chr2 140549338 140541006 C G 0.96 0.455626312777188 1 DEL 1 Missense_Mutation 98 0.0918367346938776 0 TCGA-MX-A663-01 DNAH7 chr2 195817821 195816790 C T 0.76 0.351859097311212 0.982954589902355 DEL 1 Missense_Mutation 96 0.0729166666666667 0 TCGA-MX-A663-01 SYNE1 chr6 152356632 152350223 T C 1 0.711772188232855 1 DEL 1 Missense_Mutation 91 0.175824175824176 0 TCGA-MX-A663-01 TRPA1 chr8 72030291 72023091 C T 1 0.71622430792424 1 DEL 1 Missense_Mutation 52 0.25 0 TCGA-MX-A663-01 TRPS1 chr8 115597151 115587269 T A 0.76 0.52767270560166 0.973752945101984 DEL 1 Missense_Mutation 474 0.0611814345991561 0 TCGA-MX-A663-01 TRPS1 chr8 115594860 115587270 C A 0.75 0.521446985291261 0.970795790687919 DEL 1 Missense_Mutation 480 0.0604166666666667 0 TCGA-BR-A44T-01 FAT2 chr5 151525471 151521510 C T 0.75 0.397185211739716 0.980814012599068 DEL 0 Nonsense_Mutation 102 0.0980392156862745 1 TCGA-BR-A44T-01 CDH1 chr16 68816049 68810251 A T 0.47 0.270324241238356 0.795075395865217 DEL 0 Nonsense_Mutation 193 0.0621761658031088 1 TCGA-IN-A6RS-01 OBSCN chr1 228255494 228246575 C T 1 0.634361961062178 1 DEL 1 Missense_Mutation 69 0.260869565217391 0 TCGA-IN-A6RS-01 TTN chr2 178780795 178776874 G A 0.77 0.490200189476972 0.980447238732131 DEL 1 Missense_Mutation 120 0.15 0 TCGA-IN-A6RS-01 DNAH5 chr5 13719971 13714536 C T 1 0.767792329739454 1 DEL 1 Missense_Mutation 58 0.379310344827586 0 TCGA-IN-A6RS-01 SYNE1 chr6 152369828 152367322 T G 1 0.76129488278288 1 DEL 1 Missense_Mutation 215 0.209302325581395 0 TCGA-IN-A6RS-01 GLI3 chr7 41972365 41965174 G A 1 0.664722683051598 1 DEL 1 Missense_Mutation 83 0.228915662650602 0 TCGA-IN-A6RS-01 TRPA1 chr8 72071168 72062806 G A 1 0.735210082082421 1 DEL 1 Missense_Mutation 94 0.25531914893617 0 TCGA-IN-A6RS-01 CSMD3 chr8 112685700 112685691 G C 1 0.806233112575844 1 DEL 1 Missense_Mutation 81 0.333333333333333 0 TCGA-IN-A6RS-01 DCLK1 chr13 35873875 35871241 G C 0.97 0.621261878809603 1 DEL 1 Missense_Mutation 123 0.186991869918699 0 TCGA-IN-A6RS-01 TP53 chr17 7682244 7675190 C T 1 0.497647602634813 1 DEL 1 Missense_Mutation 28 0.321428571428571 0 TCGA-VQ-A94P-01 USH2A chr1 216204955 216199975 T G 0.51 0.268898581845555 0.887095589775413 DEL 0 Nonsense_Mutation 115 0.0782608695652174 1 TCGA-VQ-A94P-01 OBSCN chr1 228301692 228293365 A G 0.37 0.16054434340416 0.809126333583952 DEL 0 Nonsense_Mutation 87 0.0574712643678161 1 TCGA-VQ-A94P-01 APOB chr2 21012931 21006880 A C 0.46 0.233975233299881 0.846738278361888 DEL 0 Nonsense_Mutation 113 0.0707964601769911 1 TCGA-VQ-A94P-01 APOB chr2 21010952 21007578 T G 0.46 0.233975233299881 0.846738278361888 DEL 0 Nonsense_Mutation 113 0.0707964601769911 1 TCGA-VQ-A94P-01 LRP1B chr2 140875288 140867679 T G 0.49 0.238245531251343 0.899612184731853 DEL 0 Nonsense_Mutation 93 0.0752688172043011 1 TCGA-VQ-A94P-01 ERBB4 chr2 211718402 211713626 A C 0.75 0.329508237238037 0.982236014341951 DEL 0 Nonsense_Mutation 52 0.115384615384615 1 TCGA-VQ-A94P-01 ABCA12 chr2 214959263 214950937 A C 0.53 0.267417545801889 0.915877183924382 DEL 0 Nonsense_Mutation 99 0.0808080808080808 1 TCGA-VQ-A94P-01 DNAH5 chr5 13841364 13841066 T G 0.45 0.219270452421702 0.85679386949159 DEL 0 Nonsense_Mutation 101 0.0693069306930693 1 TCGA-VQ-A94P-01 SYNE1 chr6 152383253 152376855 G T 0.5 0.214577780238882 0.937242329979607 DEL 0 Nonsense_Mutation 65 0.0769230769230769 1 TCGA-VQ-A94P-01 PCLO chr7 82922937 82916017 G T 0.45 0.288022430807882 0.684381912365827 DEL 0 Nonsense_Mutation 274 0.0693430656934307 1 TCGA-VQ-A94P-01 RP1 chr8 54634602 54624750 T G 0.43 0.184017104330692 0.882760761604697 DEL 0 Nonsense_Mutation 76 0.0657894736842105 1 TCGA-CD-A4MH-01 NRXN1 chr2 50553805 50552589 G T 0.54 0.285511081971582 0.913488635707933 DEL 0 Nonsense_Mutation 96 0.09375 1 TCGA-CD-A4MH-01 DCHS2 chr4 154250970 154242657 C A 1 0.834041349437244 1 DEL 1 Missense_Mutation 82 0.378048780487805 0 TCGA-CD-A4MH-01 UTRN chr6 144523815 144516329 T A 0.91 0.447877117593618 0.989656066095874 DEL 1 Missense_Mutation 57 0.157894736842105 0 TCGA-CD-A4MH-01 TP53 chr17 7674141 7670694 C - 1 0.736592964034722 1 DEL 1 Missense_Mutation 34 0.441176470588235 0 TCGA-VQ-A91Z-01 FLG chr1 152320772 152311396 T G 0.9 0.746563625020525 1 DEL 1 Missense_Mutation 403 0.24317617866005 0 TCGA-VQ-A91Z-01 FLG2 chr1 152359818 152355157 T G 1 0.974463068745027 1 DEL 1 Missense_Mutation 392 0.553571428571429 0 TCGA-VQ-A91Z-01 NRXN1 chr2 51037189 51028224 G A 1 0.615071301418757 1 DEL 1 Missense_Mutation 8 0.875 0 TCGA-VQ-A91Z-01 DNAH7 chr2 195833301 195824425 C T 1 0.722482837979714 1 DEL 1 Missense_Mutation 35 0.628571428571429 0 TCGA-VQ-A91Z-01 ABCA12 chr2 214954275 214949127 T G 1 0.703305086519244 1 DEL 1 Missense_Mutation 80 0.375 0 TCGA-VQ-A91Z-01 FAT2 chr5 151548522 151542933 G C 1 0.739354376668276 1 DEL 1 Missense_Mutation 77 0.402597402597403 0 TCGA-VQ-A91Z-01 TRPS1 chr8 115420946 115414193 C T 0.98 0.636810412927298 1 DEL 1 Missense_Mutation 115 0.208695652173913 0 TCGA-VQ-A91Z-01 PCDH15 chr10 54027385 54022944 G T 0.52 0.291110541908487 0.847438801660208 DEL 0 Nonsense_Mutation 79 0.139240506329114 1 TCGA-VQ-A91Z-01 SACS chr13 23363407 23355407 C T 1 0.854138328439604 1 DEL 1 Missense_Mutation 42 0.69047619047619 0 TCGA-VQ-A91Z-01 PEG3 chr19 56823303 56816160 T G 0.96 0.725469027225073 1 DEL 1 Missense_Mutation 130 0.353846153846154 0 TCGA-VQ-A91Z-01 PTPRT chr20 42115237 42106830 C T 1 0.866487185071813 1 DEL 1 Missense_Mutation 139 0.309352517985612 0 TCGA-BR-4357-01 SPTA1 chr1 158622740 158620322 A T 1 0.682730826109639 1 DEL 1 Missense_Mutation 133 0.135338345864662 0 TCGA-BR-4357-01 XIRP2 chr2 167251622 167248721 A C 1 0.892152411457256 1 DEL 1 Missense_Mutation 258 0.201550387596899 0 TCGA-BR-4357-01 TTN chr2 178545717 178538664 G T 1 0.936973261934013 1 DEL 1 Missense_Mutation 497 0.189134808853119 0 TCGA-BR-4357-01 TTN chr2 178575203 178570405 C G 1 0.778528981097545 1 DEL 1 Missense_Mutation 70 0.257142857142857 0 TCGA-BR-4357-01 DNAH5 chr5 13712205 13708196 A G 1 0.975979138728093 1 DEL 1 Missense_Mutation 436 0.43348623853211 0 TCGA-BR-4357-01 DST chr6 56561251 56552321 T C 1 0.871009784849999 1 DEL 1 Missense_Mutation 129 0.27906976744186 0 TCGA-BR-4357-01 DYNC2H1 chr11 103164517 103156631 A G 1 0.813841354317208 1 DEL 1 Missense_Mutation 76 0.289473684210526 0 TCGA-BR-4357-01 ABCC9 chr12 21817820 21809884 T A 1 0.920048741469326 1 DEL 1 Missense_Mutation 254 0.255905511811024 0 TCGA-BR-4357-01 ABCC9 chr12 21824416 21817274 A T 1 0.886578723596368 1 DEL 1 Missense_Mutation 242 0.210743801652893 0 TCGA-BR-4357-01 TP53 chr17 7675271 7674220 C T 1 0.953711341533834 1 DEL 0 Silent 130 0.638461538461538 0 TCGA-BR-4357-01 PTPRT chr20 42892805 42885902 T C 0.97 0.554824313744849 1 DEL 1 Missense_Mutation 218 0.073394495412844 0 TCGA-BR-8058-01 PLXNA4 chr7 132202569 132198513 A C 1 0.346199577586384 1 DEL 1 Missense_Mutation 27 0.148148148148148 0 TCGA-BR-8058-01 CDH1 chr16 68810739 68810269 G T 1 0.840746980268393 1 DEL 1 Missense_Mutation 90 0.311111111111111 0 TCGA-BR-8058-01 DCC chr18 53073802 53066136 A G 1 0.643142498265395 1 DEL 1 Missense_Mutation 36 0.277777777777778 0 TCGA-VQ-A8E2-01 SPTA1 chr1 158626671 158623104 T A 0.46 0.311354931486822 0.64738104528826 DEL 0 Nonsense_Mutation 438 0.0616438356164384 1 TCGA-VQ-A8E2-01 FMN2 chr1 240209085 240208188 G A 1 0.363406414581243 1 DEL 1 Missense_Mutation 22 0.181818181818182 0 TCGA-VQ-A8E2-01 CNTNAP5 chr2 124436814 124434645 T G 1 0.51014208538628 1 DEL 1 Missense_Mutation 22 0.272727272727273 0 TCGA-VQ-A8E2-01 SCN10A chr3 38773556 38763581 - TG 0.75 0.370712466390711 0.981875508803229 DEL 1 Missense_Mutation 68 0.117647058823529 0 TCGA-VQ-A8E2-01 DNAH11 chr7 21802920 21801238 AGAGGTGAACCAAACCAACAAAACCATC - 0.72 0.262380933930193 0.980709390664416 DEL 1 Missense_Mutation 41 0.0975609756097561 0 TCGA-VQ-A8E2-01 PCDH17 chr13 57643611 57633673 T A 1 0.738888204729839 1 DEL 1 Missense_Mutation 33 0.424242424242424 0 TCGA-VQ-A8E2-01 TP53 chr17 7676535 7673802 C T 1 0.511836519114917 1 DEL 1 Missense_Mutation 17 0.352941176470588 0 TCGA-IN-A6RO-01 HMCN1 chr1 186155396 186145906 A T 1 0.80565454300783 1 DEL 1 Missense_Mutation 52 0.442307692307692 0 TCGA-IN-A6RO-01 USH2A chr1 216197905 216190336 G C 1 0.852767804675289 1 DEL 1 Missense_Mutation 56 0.517857142857143 0 TCGA-IN-A6RO-01 CNTNAP5 chr2 124439968 124434561 G T 1 0.635330157582331 1 DEL 1 Missense_Mutation 59 0.305084745762712 0 TCGA-IN-A6RO-01 TTN chr2 178719776 178718583 T A 1 0.862002204409542 1 DEL 1 Missense_Mutation 64 0.5 0 TCGA-IN-A6RO-01 DNAH7 chr2 195822482 195816938 - T 0.7 0.263651299206353 0.978879539702076 DEL 1 Missense_Mutation 20 0.2 0 TCGA-IN-A6RO-01 PCLO chr7 82923897 82916169 T G 1 0.961433991828433 1 DEL 1 Missense_Mutation 344 0.433139534883721 0 TCGA-IN-A6RO-01 RELN chr7 103518335 103515191 T G 1 0.794829253021539 1 DEL 1 Missense_Mutation 62 0.387096774193548 0 TCGA-IN-A6RO-01 PREX2 chr8 68106923 68099725 A C 1 0.893169020105113 1 DEL 1 Missense_Mutation 81 0.518518518518518 0 TCGA-IN-A6RO-01 CSMD3 chr8 112343206 112335456 A C 1 0.833736550432157 1 DEL 1 Missense_Mutation 48 0.520833333333333 0 TCGA-IN-A6RO-01 PCDH15 chr10 53823802 53822092 T G 1 0.87374674445818 1 DEL 1 Missense_Mutation 140 0.4 0 TCGA-IN-A6RO-01 LRRK2 chr12 40279537 40278229 C G 1 0.906334803856938 1 DEL 1 Missense_Mutation 105 0.485714285714286 0 TCGA-IN-A6RO-01 NBEA chr13 35670647 35667505 C T 1 0.857354853057783 1 DEL 1 Missense_Mutation 432 0.127314814814815 0 TCGA-IN-A6RO-01 DCLK1 chr13 36119088 36112119 G C 0.74 0.487385509130341 0.973721966722302 DEL 1 Missense_Mutation 370 0.0594594594594595 0 TCGA-IN-A6RO-01 PCDH17 chr13 57639511 57633715 G T 1 0.726013284146479 1 DEL 0 Silent 15 0.8 0 TCGA-IN-A6RO-01 MUC16 chr19 8978356 8973515 A C 1 0.788803205639024 1 DEL 1 Missense_Mutation 70 0.4 0 TCGA-IN-A6RO-01 RYR1 chr19 38457912 38455471 C T 0.39 0.202844777783972 0.693133549639259 DEL 0 Nonsense_Mutation 105 0.0857142857142857 1 TCGA-IN-A6RO-01 PTPRT chr20 42164043 42161530 C T 0.78 0.482674056767005 0.982215692829927 DEL 1 Missense_Mutation 92 0.173913043478261 0 TCGA-VQ-A91Q-01 USH2A chr1 216208118 216207318 T A 1 0.771366881000567 1 DEL 1 Missense_Mutation 122 0.336065573770492 0 TCGA-VQ-A91Q-01 THSD7B chr2 137664861 137663557 C T 1 0.493354687584635 1 DEL 1 Missense_Mutation 24 0.333333333333333 0 TCGA-VQ-A91Q-01 FAT2 chr5 151567277 151567274 T A 0.49 0.297453770250257 0.750773446934057 DEL 0 Nonsense_Mutation 101 0.148514851485149 1 TCGA-IN-AB1X-01 ARID1A chr1 26730740 26729780 GGACATGGGTACCCAGGGCAGCCATACG - 1 0.770383922324691 1 DEL 1 Missense_Mutation 67 0.343283582089552 0 TCGA-IN-AB1X-01 SCN10A chr3 38706118 38697977 C T 0.97 0.558079421414155 1 DEL 1 Missense_Mutation 71 0.211267605633803 0 TCGA-IN-AB1X-01 CSMD1 chr8 2961053 2957779 C A 0.95 0.390702028172285 0.989295229581725 DEL 1 Missense_Mutation 29 0.206896551724138 0 TCGA-IN-AB1X-01 TLR4 chr9 117717355 117712625 A C 0.73 0.460777257092511 0.972637950181666 DEL 0 Nonsense_Mutation 106 0.160377358490566 1 TCGA-IN-AB1X-01 NAV3 chr12 78122270 78118072 G A 0.96 0.695525881267813 1 DEL 1 Missense_Mutation 190 0.210526315789474 0 TCGA-IN-AB1X-01 DNAH17 chr17 78488540 78480743 G T 0.57 0.243937087642647 0.959341087212993 DEL 0 Nonsense_Mutation 40 0.125 1 TCGA-IN-AB1X-01 MUC16 chr19 8963076 8957419 G T 1 0.758941373404064 1 DEL 1 Missense_Mutation 259 0.22007722007722 0 TCGA-IN-AB1X-01 PTPRT chr20 42794675 42791385 T C 1 0.609238491855588 1 DEL 1 Missense_Mutation 42 0.261904761904762 0 TCGA-FP-7998-01 ARID1A chr1 26775018 26774761 C T 1 0.768224066535337 1 DEL 1 Missense_Mutation 102 0.245098039215686 0 TCGA-FP-7998-01 AHNAK2 chr14 104948270 104946711 G A 0.89 0.614137544991471 1 DEL 1 Missense_Mutation 209 0.143540669856459 0 TCGA-BR-6457-01 FLG2 chr1 152355911 152355157 T A 1 0.911908029172264 1 DEL 1 Missense_Mutation 274 0.27007299270073 0 TCGA-BR-6457-01 FMN2 chr1 240392638 240392538 A C 0.59 0.37999484461677 0.87923505794319 DEL 0 Nonsense_Mutation 204 0.0931372549019608 1 TCGA-BR-6457-01 FAT4 chr4 125327895 125319917 G A 0.49 0.304602150386223 0.755522892252518 DEL 0 Nonsense_Mutation 221 0.0769230769230769 1 TCGA-BR-6457-01 ADGRV1 chr5 90663596 90658211 G T 0.53 0.296253811723662 0.880616188878551 DEL 0 Nonsense_Mutation 132 0.0833333333333333 1 TCGA-BR-6457-01 UTRN chr6 144494986 144490132 G A 0.62 0.361282648658914 0.938281113244257 DEL 0 Nonsense_Mutation 134 0.0970149253731343 1 TCGA-BR-6457-01 GLI3 chr7 41970099 41965018 G T 0.86 0.386707793538937 0.987235966386408 DEL 1 Missense_Mutation 52 0.134615384615385 0 TCGA-BR-6457-01 RP1 chr8 54633775 54628864 C G 0.57 0.371262058759079 0.848530587619644 DEL 0 Nonsense_Mutation 222 0.0900900900900901 1 TCGA-BR-6457-01 CSMD3 chr8 112307807 112304775 C T 1 0.854412315390391 1 DEL 1 Missense_Mutation 108 0.305555555555556 0 TCGA-BR-6457-01 PCDH17 chr13 57644015 57634319 C A 0.84 0.326376922835239 0.985770247331507 DEL 1 Missense_Mutation 38 0.131578947368421 0 TCGA-BR-6457-01 TP53 chr17 7683567 7673704 G A 1 0.636734052304083 1 DEL 1 Missense_Mutation 101 0.178217821782178 0 TCGA-BR-6457-01 DSEL chr18 67520417 67513458 G A 0.95 0.509607565710211 1 DEL 1 Missense_Mutation 80 0.15 0 TCGA-BR-6457-01 MUC16 chr19 8943688 8936797 T G 0.98 0.667799140496201 1 DEL 1 Missense_Mutation 200 0.155 0 TCGA-EQ-5647-01 USH2A chr1 216098862 216089121 T C 0.42 0.295009504106206 0.566207960669728 DEL 0 Nonsense_Mutation 338 0.0976331360946746 1 TCGA-EQ-5647-01 XIRP2 chr2 167251613 167244413 A C 0.89 0.619164494945649 1 DEL 1 Missense_Mutation 103 0.271844660194175 0 TCGA-EQ-5647-01 LRP2 chr2 169193109 169185774 G A 0.16 0.101033268713828 0.247036732640586 DEL 0 Nonsense_Mutation 378 0.0502645502645503 1 TCGA-EQ-5647-01 ABCC9 chr12 21859816 21859617 G A 1 0.990249655976751 1 DEL 0 Silent 1438 0.735048678720445 0 TCGA-EQ-5647-01 DCC chr18 53063947 53063377 C A 1 0.972821557294212 1 DEL 1 Missense_Mutation 363 0.575757575757576 0 TCGA-B7-A5TN-01 COL11A1 chr1 103077396 103074626 C A 0.44 0.171929738107475 0.904621633024377 DEL 0 Nonsense_Mutation 35 0.114285714285714 1 TCGA-B7-A5TN-01 FLG chr1 152315895 152313530 C G 0.99 0.773938205887584 1 DEL 1 Missense_Mutation 427 0.17096018735363 0 TCGA-B7-A5TN-01 RYR2 chr1 237574863 237566567 C A 0.85 0.367496365798881 0.986711792221288 DEL 1 Missense_Mutation 27 0.222222222222222 0 TCGA-B7-A5TN-01 SYNE1 chr6 152328231 152325112 A T 1 0.868764139309242 1 DEL 1 Missense_Mutation 151 0.324503311258278 0 TCGA-B7-A5TN-01 AHNAK2 chr14 104960516 104952869 G A 1 0.90136643780688 1 DEL 1 Missense_Mutation 424 0.259433962264151 0 TCGA-B7-A5TN-01 TP53 chr17 7681994 7673763 T C 1 0.855358838965953 1 DEL 1 Missense_Mutation 45 0.622222222222222 0 TCGA-B7-A5TN-01 DNAH17 chr17 78509407 78506809 C T 1 0.713002132829949 1 DEL 1 Missense_Mutation 126 0.23015873015873 0 TCGA-B7-A5TN-01 DSEL chr18 67512313 67512171 A C 0.85 0.595444259500342 0.988167904477628 DEL 1 Missense_Mutation 125 0.224 0 TCGA-B7-A5TN-01 DSEL chr18 67519762 67512295 A T 0.9 0.544191944039596 1 DEL 1 Missense_Mutation 68 0.235294117647059 0 TCGA-VQ-A923-01 ARID1A chr1 26739019 26731581 C T 1 0.896693886542961 1 DEL 1 Missense_Mutation 98 0.428571428571429 0 TCGA-VQ-A923-01 COL12A1 chr6 75094134 75090152 A C 1 0.828182752146769 1 DEL 1 Missense_Mutation 100 0.31 0 TCGA-VQ-A923-01 SYNE1 chr6 152331366 152329740 C T 0.47 0.218587293876211 0.901278843082019 DEL 0 Nonsense_Mutation 73 0.0821917808219178 1 TCGA-VQ-A923-01 CUBN chr10 16940970 16939006 A G 1 0.804500242847614 1 DEL 1 Missense_Mutation 63 0.349206349206349 0 TCGA-VQ-A923-01 TP53 chr17 7679439 7675088 C T 1 0.913432604001182 1 DEL 0 Silent 80 0.5625 0 TCGA-VQ-A923-01 EPB41L3 chr18 5453133 5445197 C A 1 0.905963797406181 1 DEL 1 Missense_Mutation 104 0.442307692307692 0 TCGA-VQ-A923-01 RYR1 chr19 38495094 38486045 G T 1 0.610808780227737 1 DEL 1 Missense_Mutation 62 0.17741935483871 0 TCGA-BR-7716-01 SPTA1 chr1 158632815 158626851 C A 0.49 0.257167203959526 0.866435248756106 DEL 0 Nonsense_Mutation 142 0.0633802816901408 1 TCGA-BR-7716-01 USH2A chr1 215627247 215625809 C T 1 0.572400246599646 1 DEL 1 Missense_Mutation 123 0.130081300813008 0 TCGA-BR-7716-01 TTN chr2 178790576 178782418 C G 0.84 0.355393708160949 0.986373798035707 DEL 1 Missense_Mutation 55 0.109090909090909 0 TCGA-BR-7716-01 FAT2 chr5 151530434 151525782 G C 0.96 0.547815156727163 1 DEL 1 Missense_Mutation 105 0.142857142857143 0 TCGA-BR-7716-01 TRPS1 chr8 115595463 115587198 C A 1 0.932171704493192 1 DEL 0 Silent 142 0.429577464788732 0 TCGA-BR-7716-01 FAT3 chr11 92815779 92806404 A G 1 0.620489119282158 1 DEL 1 Missense_Mutation 20 0.4 0 TCGA-BR-7716-01 AHNAK2 chr14 104953666 104945567 G C 0.77 0.537425216640979 0.972668615359468 DEL 1 Missense_Mutation 263 0.114068441064639 0 TCGA-BR-7716-01 AHNAK2 chr14 104948819 104946062 G C 0.36 0.192326931229945 0.633849756627334 DEL 0 Nonsense_Mutation 188 0.0531914893617021 1 TCGA-BR-7716-01 TP53 chr17 7679937 7673802 C T 1 0.580917427341949 1 DEL 1 Missense_Mutation 19 0.368421052631579 0 TCGA-BR-7716-01 MUC16 chr19 8952056 8950431 G T 1 0.627266825229218 1 DEL 1 Missense_Mutation 91 0.175824175824176 0 TCGA-BR-6564-01 SMAD4 chr18 51074362 51065559 CGCTTTTGTTTG - 1 0.60269857459022 1 DEL 1 Missense_Mutation 111 0.135135135135135 0 TCGA-BR-8484-01 ADGRB3 chr6 69240445 69233344 T G 1 0.892857237984848 1 DEL 1 Missense_Mutation 195 0.251282051282051 0 TCGA-BR-8484-01 PCDH15 chr10 53964126 53961800 T A 0.59 0.299244118720418 0.953603825302211 DEL 0 Nonsense_Mutation 105 0.0761904761904762 1 TCGA-BR-8484-01 PCDH17 chr13 57640601 57633198 G A 0.93 0.450737074334871 1 DEL 1 Missense_Mutation 75 0.12 0 TCGA-BR-8484-01 TP53 chr17 7679218 7675088 C T 1 0.867561308449894 1 DEL 0 Silent 69 0.449275362318841 0 TCGA-BR-8484-01 MUC16 chr19 8909395 8900312 G A 0.57 0.318440021121004 0.921915992779136 DEL 0 Nonsense_Mutation 150 0.0733333333333333 1 TCGA-RD-A8MV-01 HMCN1 chr1 186118542 186115384 T G 1 0.719869960039544 1 DEL 1 Missense_Mutation 44 0.340909090909091 0 TCGA-RD-A8MV-01 LRP2 chr2 169183960 169175310 G A 0.57 0.240985202139671 0.959416570403466 DEL 0 Nonsense_Mutation 50 0.1 1 TCGA-FP-A8CX-01 RYR2 chr1 237567298 237566590 G A 1 0.328324033267428 0.989125254225151 DEL 1 Missense_Mutation 32 0.125 0 TCGA-FP-A8CX-01 NCKAP5 chr2 132789015 132783066 T A 0.68 0.321245360364346 0.975345924176748 DEL 1 Missense_Mutation 88 0.0795454545454545 0 TCGA-FP-A8CX-01 MAP2 chr2 209699218 209694483 A C 0.77 0.307555437081044 0.983436313754491 DEL 1 Missense_Mutation 55 0.0909090909090909 0 TCGA-FP-A8CX-01 DOCK2 chr5 170082849 170077755 C T 0.92 0.304824985292096 0.987063379625343 DEL 1 Missense_Mutation 37 0.108108108108108 0 TCGA-FP-A8CX-01 PCLO chr7 83144256 83134534 C A 1 0.723564081379101 1 DEL 1 Missense_Mutation 44 0.295454545454545 0 TCGA-FP-A8CX-01 NAV3 chr12 78147149 78137263 G C 0.89 0.393824784729796 0.988258415815184 DEL 1 Missense_Mutation 67 0.104477611940299 0 TCGA-FP-A8CX-01 CDH1 chr16 68818646 68808730 A G 1 0.759284816057328 1 DEL 1 Missense_Mutation 65 0.261538461538462 0 TCGA-VQ-AA68-01 FLG2 chr1 152364783 152354965 T C 1 0.935707452986854 1 DEL 0 Silent 388 0.306701030927835 0 TCGA-VQ-AA68-01 SPTA1 chr1 158617838 158611341 A - 0.56 0.312215065405621 0.902260514507644 DEL 0 Nonsense_Mutation 99 0.111111111111111 1 TCGA-VQ-AA68-01 SPTA1 chr1 158612185 158611342 T G 0.56 0.312215065405621 0.902260514507644 DEL 0 Nonsense_Mutation 99 0.111111111111111 1 TCGA-VQ-AA68-01 SPTA1 chr1 158636082 158635932 T C 1 0.635073889462582 1 DEL 1 Missense_Mutation 95 0.210526315789474 0 TCGA-VQ-AA68-01 SPTA1 chr1 158659059 158652528 T G 0.98 0.670879356539162 1 DEL 1 Missense_Mutation 158 0.19620253164557 0 TCGA-VQ-AA68-01 SPTA1 chr1 158661839 158656653 G A 0.33 0.204916247484234 0.514153554270533 DEL 0 Nonsense_Mutation 256 0.06640625 1 TCGA-VQ-AA68-01 SPTA1 chr1 158683935 158676286 A C 1 0.75687196275143 1 DEL 1 Missense_Mutation 235 0.208510638297872 0 TCGA-VQ-AA68-01 OBSCN chr1 228292720 228288081 G A 1 0.851994366374779 1 DEL 1 Missense_Mutation 94 0.372340425531915 0 TCGA-VQ-AA68-01 OBSCN chr1 228299418 228294334 C T 1 0.841285121784395 1 DEL 1 Missense_Mutation 176 0.272727272727273 0 TCGA-VQ-AA68-01 FMN2 chr1 240360443 240355838 A C 1 0.463052376856737 1 DEL 1 Missense_Mutation 39 0.205128205128205 0 TCGA-VQ-AA68-01 TTN chr2 178584233 178582196 C A 1 0.892751843745092 1 DEL 1 Missense_Mutation 89 0.50561797752809 0 TCGA-VQ-AA68-01 TTN chr2 178713226 178709839 T G 1 0.900717675582596 1 DEL 1 Missense_Mutation 84 0.547619047619048 0 TCGA-VQ-AA68-01 ERBB4 chr2 211563244 211561997 A T 1 0.899152212471525 1 DEL 1 Missense_Mutation 86 0.534883720930233 0 TCGA-VQ-AA68-01 SCN10A chr3 38755751 38752385 T G 1 0.537829478782969 1 DEL 1 Missense_Mutation 51 0.215686274509804 0 TCGA-VQ-AA68-01 SYNE1 chr6 152172235 152164199 G C 0.33 0.175260183858996 0.568286551390741 DEL 0 Nonsense_Mutation 123 0.0813008130081301 1 TCGA-VQ-AA68-01 ABCA13 chr7 48587420 48580231 G A 1 0.78042744799752 1 DEL 1 Missense_Mutation 43 0.395348837209302 0 TCGA-VQ-AA68-01 PCLO chr7 82881305 82879384 T C 1 0.67454906659067 1 DEL 1 Missense_Mutation 22 0.5 0 TCGA-VQ-AA68-01 MUC17 chr7 101040072 101032369 C T 1 0.96361504418216 1 DEL 1 Missense_Mutation 239 0.569037656903766 0 TCGA-VQ-AA68-01 CSMD1 chr8 3712230 3708474 A C 1 0.801224126300635 1 DEL 1 Missense_Mutation 31 0.612903225806452 0 TCGA-VQ-AA68-01 PREX2 chr8 68087780 68083324 T G 1 0.865161285522732 1 DEL 1 Missense_Mutation 93 0.397849462365591 0 TCGA-VQ-AA68-01 TRPA1 chr8 72067883 72062878 A G 1 0.762831465844034 1 DEL 1 Missense_Mutation 69 0.318840579710145 0 TCGA-VQ-AA68-01 CSMD3 chr8 112339787 112336731 T C 1 0.923964056779271 1 DEL 1 Missense_Mutation 203 0.349753694581281 0 TCGA-VQ-AA68-01 NAV3 chr12 78007452 78007045 G T 1 0.844738292248559 1 DEL 1 Missense_Mutation 57 0.508771929824561 0 TCGA-VQ-AA68-01 SACS chr13 23346446 23337661 A C 1 0.900962004058146 1 DEL 1 Missense_Mutation 81 0.493827160493827 0 TCGA-VQ-AA68-01 SLITRK5 chr13 87681270 87677312 C T 1 0.651174514193782 1 DEL 1 Missense_Mutation 111 0.207207207207207 0 TCGA-VQ-AA68-01 AHNAK2 chr14 104945548 104942045 T C 1 0.986206242453184 1 DEL 0 Silent 489 0.725971370143149 0 TCGA-VQ-AA68-01 LAMA1 chr18 6981703 6980577 A T 1 0.769973336637621 1 DEL 1 Missense_Mutation 48 0.375 0 TCGA-VQ-AA68-01 LAMA1 chr18 6992675 6983196 G T 1 0.90648940734192 1 DEL 1 Missense_Mutation 108 0.444444444444444 0 TCGA-VQ-AA68-01 MUC16 chr19 8984184 8981111 A - 1 0.363859597683739 1 DEL 1 Missense_Mutation 13 0.307692307692308 0 TCGA-BR-8682-01 TRPA1 chr8 72067105 72057795 C T 1 0.689723934899414 1 DEL 1 Missense_Mutation 70 0.242857142857143 0 TCGA-BR-8682-01 DCLK1 chr13 35837786 35836135 G A 1 0.725475460948032 1 DEL 1 Missense_Mutation 169 0.171597633136095 0 TCGA-BR-8682-01 TP53 chr17 7676704 7673704 G A 0.9 0.58432552053678 1 DEL 1 Missense_Mutation 90 0.233333333333333 0 TCGA-BR-8682-01 ZNF536 chr19 30554825 30549119 C T 0.4 0.212912826664148 0.727471219808268 DEL 0 Nonsense_Mutation 108 0.0833333333333333 1 TCGA-VQ-A927-01 LRP1B chr2 141062659 141058906 T A 1 0.444956109819989 1 DEL 1 Missense_Mutation 66 0.106060606060606 0 TCGA-VQ-A927-01 TTN chr2 178586997 178580562 A C 1 0.42886635417638 1 DEL 1 Missense_Mutation 71 0.0985915492957746 0 TCGA-D7-6820-01 FLG chr1 152316992 152313057 C T 0.8 0.712474836780009 0.889233184320472 DEL 0 Nonsense_Mutation 597 0.346733668341709 1 TCGA-D7-6820-01 ERBB4 chr2 211432773 211424241 C T 0.77 0.512712440813305 0.975577646737287 DEL 0 Nonsense_Mutation 57 0.333333333333333 1 TCGA-D7-6820-01 TRPA1 chr8 72071100 72065557 A G 0.95 0.644546820504628 1 DEL 1 Missense_Mutation 56 0.410714285714286 0 TCGA-D7-6820-01 NALCN chr13 101146103 101144835 A C 0.69 0.591259894778616 0.788279153746437 DEL 0 Nonsense_Mutation 443 0.297968397291196 1 TCGA-D7-6820-01 TP53 chr17 7680361 7674252 C T 0.88 0.669851403416254 0.989430586466781 DEL 0 Nonsense_Mutation 108 0.37962962962963 1 TCGA-CG-4455-01 DNAH11 chr7 21905931 21899398 C T 0.67 0.493636097576363 0.87187581321185 DEL 0 Nonsense_Mutation 311 0.131832797427653 1 TCGA-CG-4455-01 PCLO chr7 82956812 82950656 T G 1 0.8804707992312 1 DEL 1 Missense_Mutation 160 0.325 0 TCGA-CG-4455-01 CUBN chr10 16905143 16899013 G A 0.76 0.512308382304638 0.973458918801781 DEL 0 Nonsense_Mutation 160 0.15 1 TCGA-BR-6801-01 SCN10A chr3 38707829 38698476 G A 1 0.924792811568271 1 DEL 1 Missense_Mutation 101 0.524752475247525 0 TCGA-BR-6801-01 DNAH17 chr17 78471116 78461683 G A 1 0.892616013378685 1 DEL 1 Missense_Mutation 52 0.653846153846154 0 TCGA-BR-6801-01 LAMA1 chr18 6979842 6974964 G A 1 0.892263513466618 1 DEL 1 Missense_Mutation 53 0.641509433962264 0 TCGA-CG-4304-01 DNAH7 chr2 195891195 195884685 G A 0.86 0.616643635139852 0.988823043977539 DEL 1 Missense_Mutation 140 0.228571428571429 0 TCGA-CG-4304-01 PCLO chr7 83140804 83135610 C G 0.83 0.421193693806048 0.986520942936235 DEL 1 Missense_Mutation 52 0.173076923076923 0 TCGA-CG-4304-01 PREX2 chr8 68083727 68080786 A G 1 0.7143021009431 1 DEL 1 Missense_Mutation 73 0.383561643835616 0 TCGA-CG-4304-01 DCLK1 chr13 36115943 36112145 G T 1 0.754021071372822 1 DEL 1 Missense_Mutation 154 0.279220779220779 0 TCGA-CG-4304-01 DNAH3 chr16 21023706 21019684 C G 1 0.763792032701814 1 DEL 1 Missense_Mutation 146 0.287671232876712 0 TCGA-BR-A4PD-01 FLG chr1 152317109 152307352 T G 0.48 0.394278985111805 0.568096606492514 DEL 0 Nonsense_Mutation 662 0.151057401812689 1 TCGA-BR-A4PD-01 NEB chr2 151673377 151666250 T G 0.6 0.426006856158114 0.803189591672447 DEL 0 Nonsense_Mutation 165 0.187878787878788 1 TCGA-BR-A4PD-01 XIRP2 chr2 167248039 167247429 A T 1 0.605379812452542 1 DEL 1 Missense_Mutation 36 0.361111111111111 0 TCGA-BR-A4PD-01 TTN chr2 178725182 178719290 T G 0.45 0.311946897818847 0.620358783070549 DEL 0 Nonsense_Mutation 198 0.141414141414141 1 TCGA-BR-A4PD-01 ERBB4 chr2 211388070 211383722 T A 0.64 0.409305015506975 0.923220244418485 DEL 0 Nonsense_Mutation 84 0.202380952380952 1 TCGA-BR-A4PD-01 SYNE1 chr6 152339425 152330546 T G 0.65 0.409143208179495 0.934564508373457 DEL 0 Nonsense_Mutation 78 0.205128205128205 1 TCGA-BR-A4PD-01 PLXNA4 chr7 132184172 132179860 A C 1 0.90831191625803 1 DEL 0 Silent 49 0.836734693877551 0 TCGA-BR-A4PD-01 CSMD1 chr8 2964322 2963318 T G 1 0.78452084431022 1 DEL 1 Missense_Mutation 201 0.318407960199005 0 TCGA-BR-A4PD-01 RP1 chr8 54629119 54621150 T C 0.67 0.476685208471321 0.901317396836582 DEL 0 Nonsense_Mutation 137 0.211678832116788 1 TCGA-BR-A4PD-01 RIMS2 chr8 103887483 103885863 A G 1 0.800655674849139 1 DEL 1 Missense_Mutation 80 0.4125 0 TCGA-BR-A4PD-01 FAM135B chr8 138157700 138152542 T G 1 0.728223918416452 1 DEL 1 Missense_Mutation 95 0.336842105263158 0 TCGA-BR-A4PD-01 DNAH3 chr16 21059269 21049663 G T 0.88 0.605969887928923 1 DEL 1 Missense_Mutation 94 0.276595744680851 0 TCGA-BR-A4PD-01 TP53 chr17 7677605 7676096 C T 1 0.943180407421437 1 DEL 1 Missense_Mutation 145 0.606896551724138 0 TCGA-BR-A4PD-01 DNAH9 chr17 11785080 11784396 T G 0.87 0.683753319992228 0.987366527646711 DEL 1 Missense_Mutation 212 0.273584905660377 0 TCGA-BR-A4PD-01 ZNF208 chr19 21989317 21987252 T G 0.58 0.33103818120399 0.912616629730814 DEL 0 Nonsense_Mutation 60 0.183333333333333 1 TCGA-D7-8575-01 FAT2 chr5 151527418 151521648 G A 1 0.645821565870556 1 DEL 1 Missense_Mutation 38 0.368421052631579 0 TCGA-D7-8575-01 DOCK2 chr5 169723793 169714402 T C 1 0.867283393595525 1 DEL 1 Missense_Mutation 128 0.40625 0 TCGA-D7-8575-01 CSMD1 chr8 3034054 3029433 C A 0.58 0.193993393976226 0.968453391807783 DEL 0 Silent 18 0.166666666666667 0 TCGA-VQ-A8P8-01 ARID1A chr1 26785368 26779224 G T 0.59 0.251787575703748 0.965830968983799 DEL 0 Nonsense_Mutation 48 0.104166666666667 1 TCGA-VQ-A8P8-01 TTN chr2 178619411 178614643 T G 0.95 0.44022279287181 1 DEL 1 Missense_Mutation 48 0.166666666666667 0 TCGA-VQ-A8P8-01 FAT4 chr4 125500976 125491709 G A 0.6 0.229408746644883 0.970103911201076 DEL 0 Nonsense_Mutation 38 0.105263157894737 1 TCGA-VQ-A8P8-01 LRRK2 chr12 40265251 40257325 C T 0.66 0.385088620189112 0.95727913824648 DEL 0 Nonsense_Mutation 113 0.115044247787611 1 TCGA-VQ-A8P8-01 DSEL chr18 67521425 67513167 C G 0.37 0.156798152343239 0.790840565731665 DEL 0 Nonsense_Mutation 78 0.0641025641025641 1 TCGA-VQ-A8P8-01 MUC16 chr19 8944404 8938478 G A 0.32 0.177765650671109 0.555762767988276 DEL 0 Nonsense_Mutation 195 0.0564102564102564 1 TCGA-VQ-A8P8-01 MUC16 chr19 8978489 8973214 G A 1 0.533020028599175 1 DEL 1 Missense_Mutation 41 0.219512195121951 0 TCGA-BR-8367-01 FLG chr1 152314299 152309493 C T 0.52 0.371957335205399 0.703821272549401 DEL 0 Nonsense_Mutation 445 0.0786516853932584 1 TCGA-BR-8367-01 HMCN1 chr1 185992828 185989519 A C 1 0.753186935387419 1 DEL 1 Missense_Mutation 92 0.239130434782609 0 TCGA-BR-8367-01 SCN10A chr3 38775242 38771394 C A 0.72 0.397665171608748 0.975843068082112 DEL 0 Nonsense_Mutation 86 0.127906976744186 1 TCGA-BR-8367-01 ADGRB3 chr6 69337322 69332960 T G 0.8 0.370127425773315 0.984891974277802 DEL 1 Missense_Mutation 49 0.142857142857143 0 TCGA-BR-8367-01 CDH23 chr10 71784909 71777884 C T 1 0.487929624769315 1 DEL 1 Missense_Mutation 30 0.233333333333333 0 TCGA-BR-8367-01 PEG3 chr19 56832625 56824337 G A 1 0.745245348796539 1 DEL 1 Missense_Mutation 90 0.255555555555556 0 TCGA-VQ-AA6J-01 OBSCN chr1 228323311 228321734 G A 1 0.522897494496588 1 DEL 1 Missense_Mutation 63 0.174603174603175 0 TCGA-VQ-AA6J-01 PXDN chr2 1656290 1648827 T G 1 0.30022349881642 0.989614026535203 DEL 1 Missense_Mutation 14 0.214285714285714 0 TCGA-VQ-AA6J-01 PXDN chr2 1673053 1666283 C T 0.99 0.425847398712369 1 DEL 1 Missense_Mutation 42 0.166666666666667 0 TCGA-VQ-AA6J-01 LRP1B chr2 140329366 140322003 T G 1 0.581972437655796 1 DEL 1 Missense_Mutation 85 0.176470588235294 0 TCGA-VQ-AA6J-01 CTNND2 chr5 11385012 11384751 C T 0.85 0.246893814246592 0.984652902064483 DEL 1 Missense_Mutation 28 0.107142857142857 0 TCGA-VQ-AA6J-01 DNAH5 chr5 13710630 13708176 G A 1 0.916367977025575 1 DEL 1 Missense_Mutation 171 0.333333333333333 0 TCGA-VQ-AA6J-01 DNAH11 chr7 21608474 21600877 G A 1 0.608086936392085 1 DEL 1 Missense_Mutation 110 0.154545454545455 0 TCGA-VQ-AA6J-01 CSMD3 chr8 112240748 112231576 T G 0.69 0.403965841112676 0.968506704109297 DEL 0 Nonsense_Mutation 112 0.116071428571429 1 TCGA-VQ-AA6J-01 TLR4 chr9 117715140 117713721 C A 0.83 0.355140016098107 0.986029788727497 DEL 1 Missense_Mutation 43 0.13953488372093 0 TCGA-VQ-AA6J-01 SLITRK5 chr13 87681904 87676396 A C 1 0.631431679394417 1 DEL 1 Missense_Mutation 64 0.203125 0 TCGA-VQ-AA6J-01 KIF2B chr17 53828597 53823929 G T 0.6 0.27166301875011 0.96226731465493 DEL 0 Nonsense_Mutation 60 0.1 1 TCGA-IN-7806-01 RYR2 chr1 237567160 237566608 C T 1 0.726911054258246 1 DEL 1 Missense_Mutation 51 0.392156862745098 0 TCGA-IN-7806-01 PXDN chr2 1674224 1666426 G A 1 0.602895507794274 1 DEL 1 Missense_Mutation 34 0.352941176470588 0 TCGA-IN-7806-01 TTN chr2 178694637 178684968 A G 0.65 0.212375589967977 0.975673368682035 DEL 1 Missense_Mutation 16 0.1875 0 TCGA-IN-7806-01 RELN chr7 103652919 103650376 G A 0.85 0.578561670439041 0.988142303068768 DEL 1 Missense_Mutation 97 0.247422680412371 0 TCGA-IN-7806-01 CSMD1 chr8 3415549 3406135 A T 0.34 0.132042351463636 0.766495479514189 DEL 0 Nonsense_Mutation 41 0.0975609756097561 1 TCGA-IN-7806-01 TP53 chr17 7680338 7673776 G A 1 0.588794782635495 1 DEL 1 Missense_Mutation 27 0.444444444444444 0 TCGA-IN-7806-01 LAMA1 chr18 6947642 6942155 A G 1 0.724562943302093 1 DEL 1 Missense_Mutation 73 0.342465753424658 0 TCGA-CG-4300-01 OBSCN chr1 228225494 228217076 C T 1 0.421534153742972 1 DEL 1 Missense_Mutation 33 0.181818181818182 0 TCGA-CG-4300-01 FAT3 chr11 92354749 92353743 G A 1 0.878696958675565 1 DEL 1 Missense_Mutation 163 0.276073619631902 0 TCGA-CG-4300-01 TP53 chr17 7679252 7674216 C A 1 0.891312017259799 1 DEL 1 Missense_Mutation 91 0.461538461538462 0 TCGA-BR-A4J9-01 FLG chr1 152311439 152307291 G A 1 0.877309580591849 1 DEL 1 Missense_Mutation 710 0.184507042253521 0 TCGA-BR-A4J9-01 XIRP2 chr2 167245811 167243725 C T 0.68 0.376479895691555 0.96802926744682 DEL 0 Nonsense_Mutation 98 0.112244897959184 1 TCGA-D7-A4YT-01 TTN chr2 178613557 178607253 ATTTCACTTCCTCCATCATCTTCTGGATCAGACCAGTTA - 1 0.84974818537848 1 DEL 1 Missense_Mutation 137 0.27007299270073 0 TCGA-D7-A4YT-01 TTN chr2 178775280 178766546 A G 0.41 0.17412579780028 0.856538864496694 DEL 0 Nonsense_Mutation 83 0.0602409638554217 1 TCGA-D7-A4YT-01 TTN chr2 178777038 178770606 T G 1 0.881602970106778 1 DEL 1 Missense_Mutation 106 0.367924528301887 0 TCGA-D7-A4YT-01 FAT4 chr4 125317880 125316474 TCTATCAGTA - 0.63 0.410693752340888 0.905846523640162 DEL 0 Nonsense_Mutation 226 0.0929203539823009 1 TCGA-D7-A4YT-01 TRPS1 chr8 115605647 115604146 AGAGTGCAC - 1 0.912094240993062 1 DEL 1 Missense_Mutation 91 0.494505494505495 0 TCGA-D7-A4YT-01 TG chr8 132973734 132967966 G T 1 0.432040183774453 1 DEL 1 Missense_Mutation 65 0.107692307692308 0 TCGA-D7-A4YT-01 SACS chr13 23346657 23338156 C T 1 0.818316481956798 1 DEL 1 Missense_Mutation 68 0.352941176470588 0 TCGA-D7-A4YT-01 DNAH17 chr17 78509272 78507699 G A 1 0.803592720761571 1 DEL 1 Missense_Mutation 24 0.708333333333333 0 TCGA-D7-A4YT-01 PTPRT chr20 42170419 42161444 G T 1 0.854317314629274 1 DEL 1 Missense_Mutation 223 0.183856502242152 0 TCGA-VQ-A925-01 SPTA1 chr1 158624872 158623159 G C 1 0.89065578323483 1 DEL 1 Missense_Mutation 304 0.197368421052632 0 TCGA-VQ-A925-01 SPTA1 chr1 158674681 158667907 A C 1 0.86139502724157 1 DEL 1 Missense_Mutation 54 0.5 0 TCGA-VQ-A925-01 SPTA1 chr1 158682750 158678506 T A 0.63 0.236917411429776 0.974367846132665 DEL 1 Missense_Mutation 55 0.0727272727272727 0 TCGA-VQ-A925-01 LRP1B chr2 140496224 140487731 G T 1 0.721318335418559 1 DEL 1 Missense_Mutation 36 0.361111111111111 0 TCGA-VQ-A925-01 XIRP2 chr2 167254156 167245768 A G 1 0.747413303378578 1 DEL 1 Missense_Mutation 52 0.307692307692308 0 TCGA-VQ-A925-01 DCHS2 chr4 154260171 154259732 T G 0.98 0.35921024071132 0.989098958525021 DEL 1 Missense_Mutation 34 0.147058823529412 0 TCGA-VQ-A925-01 ADGRV1 chr5 90657140 90651676 T G 1 0.747533765421477 1 DEL 1 Missense_Mutation 22 0.590909090909091 0 TCGA-VQ-A925-01 SDK1 chr7 4272208 4265265 G A 1 0.65831455006925 1 DEL 1 Missense_Mutation 21 0.428571428571429 0 TCGA-VQ-A925-01 DNAH11 chr7 21693265 21687448 C T 1 0.629211531680883 1 DEL 1 Missense_Mutation 31 0.290322580645161 0 TCGA-VQ-A925-01 CSMD1 chr8 2976277 2973213 G A 1 0.809576961632802 1 DEL 1 Missense_Mutation 90 0.288888888888889 0 TCGA-VQ-A925-01 ZFHX4 chr8 76706968 76705907 G A 1 0.83595959783399 1 DEL 1 Missense_Mutation 52 0.442307692307692 0 TCGA-VQ-A925-01 DYNC2H1 chr11 103140779 103135728 G A 1 0.449511010990191 1 DEL 1 Missense_Mutation 24 0.208333333333333 0 TCGA-VQ-A925-01 ABCC9 chr12 21845827 21845716 T C 1 0.809807577832393 1 DEL 1 Missense_Mutation 74 0.310810810810811 0 TCGA-VQ-A925-01 TP53 chr17 7681419 7674225 C T 1 0.815438661730016 1 DEL 1 Missense_Mutation 71 0.309859154929577 0 TCGA-VQ-A925-01 MUC16 chr19 8967547 8963041 C T 1 0.707539062428697 1 DEL 1 Missense_Mutation 35 0.342857142857143 0 TCGA-BR-8295-01 ERBB4 chr2 211704052 211701994 G A 1 0.744863931460695 1 DEL 1 Missense_Mutation 137 0.233576642335766 0 TCGA-BR-8295-01 LRRK2 chr12 40299740 40298254 T G 1 0.755020387884805 1 DEL 1 Missense_Mutation 40 0.4 0 TCGA-BR-8295-01 TP53 chr17 7683978 7674244 TGCAGGAAC - 1 0.730457077809407 1 DEL 1 Missense_Mutation 37 0.405405405405405 0 TCGA-BR-8295-01 LAMA1 chr18 7090025 7080364 A T 1 0.85968055380868 1 DEL 1 Missense_Mutation 74 0.405405405405405 0 TCGA-IN-A6RN-01 PKHD1 chr6 52034001 52024585 G A 1 0.796743368409276 1 DEL 1 Missense_Mutation 131 0.213740458015267 0 TCGA-IN-A6RN-01 COL12A1 chr6 75188713 75183439 - CATTAGTTATCTTTCCTGATTC 1 0.554060537847264 1 DEL 1 Missense_Mutation 107 0.121495327102804 0 TCGA-IN-A6RN-01 UTRN chr6 144763013 144754765 G C 1 0.606065722757178 1 DEL 1 Missense_Mutation 79 0.164556962025316 0 TCGA-IN-A6RN-01 SACS chr13 23336474 23332078 C G 1 0.8166967208599 1 DEL 1 Missense_Mutation 131 0.229007633587786 0 TCGA-IN-A6RN-01 MUC16 chr19 8937241 8935834 A C 0.47 0.240508091617912 0.867244646244199 DEL 0 Nonsense_Mutation 131 0.0610687022900763 1 TCGA-BR-6455-01 ARID1A chr1 26782323 26780671 T G 1 0.88624952364478 1 DEL 0 Silent 130 0.446153846153846 0 TCGA-BR-6455-01 OBSCN chr1 228342993 228337105 G A 0.89 0.605328917761537 1 DEL 1 Missense_Mutation 92 0.271739130434783 0 TCGA-BR-6455-01 TTN chr2 178592235 178589688 A T 0.88 0.711967667728013 0.98712680702698 DEL 1 Missense_Mutation 287 0.268292682926829 0 TCGA-BR-6455-01 PIK3CA chr3 179218240 179210192 T C 0.83 0.576964034256025 0.98569315289095 DEL 1 Missense_Mutation 102 0.254901960784314 0 TCGA-BR-6455-01 COL12A1 chr6 75185661 75183514 C T 1 0.74630669507336 1 DEL 1 Missense_Mutation 105 0.333333333333333 0 TCGA-BR-6455-01 MUC17 chr7 101037193 101035383 G A 1 0.850943074864641 1 DEL 1 Missense_Mutation 347 0.319884726224784 0 TCGA-BR-6455-01 MUC17 chr7 101045398 101041003 C A 1 0.9177719023631 1 DEL 1 Missense_Mutation 460 0.354347826086957 0 TCGA-BR-6455-01 FAM135B chr8 138206862 138197630 C T 0.81 0.543517658792496 0.983890003624776 DEL 1 Missense_Mutation 121 0.190082644628099 0 TCGA-ZQ-A9CR-01 SPTA1 chr1 158616526 158614293 C A 0.98 0.464776620835526 1 DEL 1 Missense_Mutation 65 0.138461538461538 0 TCGA-ZQ-A9CR-01 CNTNAP5 chr2 124872301 124869716 A T 0.88 0.336269900076152 0.987024382467795 DEL 1 Missense_Mutation 40 0.125 0 TCGA-ZQ-A9CR-01 LRP1B chr2 140339036 140335646 G T 0.58 0.341567446737874 0.915885907236347 DEL 0 Nonsense_Mutation 157 0.0828025477707006 1 TCGA-ZQ-A9CR-01 LRP1B chr2 140512781 140510026 C A 0.77 0.432346020681655 0.982309251874485 DEL 1 Missense_Mutation 110 0.109090909090909 0 TCGA-ZQ-A9CR-01 TTN chr2 178646205 178636238 A C 1 0.511049093425839 1 DEL 1 Missense_Mutation 21 0.285714285714286 0 TCGA-ZQ-A9CR-01 TTN chr2 178730611 178723693 G A 1 0.426328103171078 1 DEL 1 Missense_Mutation 24 0.208333333333333 0 TCGA-ZQ-A9CR-01 CMYA5 chr5 79737016 79736175 G C 0.8 0.368885480305231 0.984865041511822 DEL 1 Missense_Mutation 53 0.132075471698113 0 TCGA-ZQ-A9CR-01 ADGRV1 chr5 90792057 90783911 A C 1 0.508791432485066 1 DEL 1 Missense_Mutation 19 0.315789473684211 0 TCGA-ZQ-A9CR-01 RIMS1 chr6 72254903 72251252 A G 1 0.521538001972724 1 DEL 1 Missense_Mutation 17 0.352941176470588 0 TCGA-ZQ-A9CR-01 SYNE1 chr6 152431409 152430503 C G 1 0.840766785228901 1 DEL 1 Missense_Mutation 93 0.333333333333333 0 TCGA-ZQ-A9CR-01 PCLO chr7 82955752 82955306 C - 0.75 0.30185577106845 0.982184239221405 DEL 1 Missense_Mutation 47 0.106382978723404 0 TCGA-ZQ-A9CR-01 FAT3 chr11 92763832 92761932 A G 0.42 0.235174661366386 0.732606483303845 DEL 0 Nonsense_Mutation 209 0.0526315789473684 1 TCGA-ZQ-A9CR-01 LAMA1 chr18 7038773 7036081 G A 1 0.699377655453658 1 DEL 1 Missense_Mutation 47 0.276595744680851 0 TCGA-BR-7723-01 FLG2 chr1 152353324 152351257 T C 1 0.77403509054996 1 DEL 1 Missense_Mutation 436 0.126146788990826 0 TCGA-BR-7723-01 LRP1B chr2 141056544 141055233 G C 1 0.652762187467039 1 DEL 1 Missense_Mutation 28 0.428571428571429 0 TCGA-BR-7723-01 ADGRV1 chr5 90841074 90840818 A G 1 0.792096190761735 1 DEL 1 Missense_Mutation 77 0.298701298701299 0 TCGA-BR-7723-01 DOCK2 chr5 169996984 169996157 A C 1 0.808326540754363 1 DEL 1 Missense_Mutation 51 0.411764705882353 0 TCGA-BR-7723-01 SYNE1 chr6 152236538 152230641 A T 1 0.550566471445923 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-BR-7723-01 SDK1 chr7 4135564 4132388 G A 1 0.689880913052316 1 DEL 1 Missense_Mutation 26 0.423076923076923 0 TCGA-BR-7723-01 PCLO chr7 82915763 82915250 T C 1 0.573307981578389 1 DEL 1 Missense_Mutation 28 0.285714285714286 0 TCGA-BR-7723-01 PCLO chr7 82960192 82954890 A C 1 0.456194784862136 1 DEL 1 Missense_Mutation 40 0.175 0 TCGA-BR-7723-01 TG chr8 132887588 132887110 T G 0.62 0.296480904102097 0.963808294698734 DEL 1 Missense_Mutation 74 0.0945945945945946 0 TCGA-BR-7723-01 NAV3 chr12 78214265 78205068 G - 0.85 0.329067763699602 0.986265350259335 DEL 1 Missense_Mutation 44 0.113636363636364 0 TCGA-BR-7723-01 SLITRK5 chr13 87686221 87676397 C A 0.49 0.257998362904872 0.870331650395655 DEL 0 Nonsense_Mutation 156 0.0576923076923077 1 TCGA-BR-7723-01 KIF2B chr17 53833367 53823679 G A 0.9 0.371733819516025 0.988093204217976 DEL 1 Missense_Mutation 50 0.12 0 TCGA-VQ-A8PK-01 TTN chr2 178625055 178615365 T C 0.89 0.626262042279852 1 DEL 1 Missense_Mutation 70 0.371428571428571 0 TCGA-VQ-A8PK-01 ERBB4 chr2 211788840 211788125 G C 0.74 0.430009292575442 0.977849186220047 DEL 1 Missense_Mutation 55 0.218181818181818 0 TCGA-VQ-A8PK-01 CMYA5 chr5 79731021 79730959 C T 0.36 0.167095088106324 0.697043113229014 DEL 0 Nonsense_Mutation 40 0.15 1 TCGA-VQ-A8PK-01 CSMD1 chr8 3418928 3409476 A C 1 0.561737521946918 1 DEL 1 Missense_Mutation 11 0.636363636363636 0 TCGA-VQ-A8PK-01 CSMD3 chr8 112394873 112390764 T G 0.87 0.463900836718509 0.988853909621865 DEL 1 Missense_Mutation 39 0.256410256410256 0 TCGA-VQ-A8PK-01 FAM135B chr8 138154552 138151666 A C 0.49 0.330463675689462 0.712760315764384 DEL 0 Nonsense_Mutation 205 0.11219512195122 1 TCGA-VQ-A8PK-01 PCDH15 chr10 53822870 53822484 G T 1 0.694716953229943 1 DEL 1 Missense_Mutation 21 0.619047619047619 0 TCGA-VQ-A8PK-01 ABCC9 chr12 21919907 21916968 A G 1 0.947278340741085 1 DEL 1 Missense_Mutation 527 0.242884250474383 0 TCGA-VQ-A8PK-01 TP53 chr17 7680176 7674202 A C 1 0.62570279982827 1 DEL 1 Missense_Mutation 37 0.432432432432432 0 TCGA-VQ-A8PK-01 DNAH9 chr17 11769791 11768562 A G 1 0.664732352223027 1 DEL 1 Missense_Mutation 46 0.434782608695652 0 TCGA-VQ-A8PU-01 SMAD4 chr18 51078884 51078329 A T 1 0.798104547261169 1 DEL 1 Missense_Mutation 41 0.560975609756098 0 TCGA-VQ-A8PU-01 ZNF536 chr19 30453613 30444563 C G 0.6 0.385631739375507 0.870665146359088 DEL 0 Nonsense_Mutation 124 0.153225806451613 1 TCGA-VQ-A8PU-01 PEG3 chr19 56817611 56817012 T C 1 0.67742431032105 1 DEL 1 Missense_Mutation 67 0.298507462686567 0 TCGA-VQ-A8PU-01 PEG3 chr19 56824507 56817013 C A 1 0.622653453896899 1 DEL 1 Missense_Mutation 67 0.26865671641791 0 TCGA-KB-A93H-01 TTN chr2 178779420 178779005 T G 1 0.892923305341397 1 DEL 1 Missense_Mutation 63 0.53968253968254 0 TCGA-KB-A93H-01 DNAH5 chr5 13903912 13901322 C T 1 0.808724981869504 1 DEL 0 Silent 24 0.708333333333333 0 TCGA-KB-A93H-01 ADGRB3 chr6 69365005 69360872 T C 1 0.888983698317394 1 DEL 1 Missense_Mutation 61 0.540983606557377 0 TCGA-KB-A93H-01 RP1 chr8 54623524 54621413 G A 1 0.743726444189037 1 DEL 1 Missense_Mutation 69 0.217391304347826 0 TCGA-KB-A93H-01 FAM135B chr8 138248046 138243060 C T 1 0.535067856844728 1 DEL 1 Missense_Mutation 27 0.222222222222222 0 TCGA-KB-A93H-01 GRM5 chr11 88512468 88509457 C T 1 0.495819231115142 1 DEL 1 Missense_Mutation 22 0.227272727272727 0 TCGA-KB-A93H-01 LRRK2 chr12 40314734 40310612 T C 1 0.681177774837256 1 DEL 1 Missense_Mutation 87 0.172413793103448 0 TCGA-KB-A93H-01 TP53 chr17 7680749 7675209 A - 1 0.785564026417461 1 DEL 0 Silent 22 0.681818181818182 0 TCGA-KB-A93H-01 LAMA1 chr18 7014614 7008544 C A 1 0.911081199782969 1 DEL 0 Silent 51 0.784313725490196 0 TCGA-KB-A93H-01 MUC16 chr19 8962645 8959243 T G 1 0.898927011441001 1 DEL 1 Missense_Mutation 76 0.5 0 TCGA-RD-A7C1-01 FLG chr1 152317257 152313643 G A 1 0.963079497233245 1 DEL 1 Missense_Mutation 586 0.261092150170648 0 TCGA-RD-A7C1-01 NEB chr2 151680844 151677988 G A 0.63 0.263670417624323 0.972575058702004 DEL 1 Missense_Mutation 64 0.078125 0 TCGA-RD-A7C1-01 TTN chr2 178546693 178544292 C G 1 0.843589746056288 1 DEL 1 Missense_Mutation 68 0.382352941176471 0 TCGA-RD-A7C1-01 TTN chr2 178619864 178618225 C G 1 0.765582454503315 1 DEL 1 Missense_Mutation 229 0.152838427947598 0 TCGA-RD-A7C1-01 ADGRB3 chr6 68645343 68638739 T G 0.8 0.44384476105145 0.984780266164332 DEL 1 Missense_Mutation 122 0.0983606557377049 0 TCGA-RD-A7C1-01 ADGRB3 chr6 69329113 69327829 C G 1 0.454997369165183 1 DEL 1 Missense_Mutation 63 0.126984126984127 0 TCGA-RD-A7C1-01 COL12A1 chr6 75184471 75183200 G A 0.97 0.526835439883323 1 DEL 1 Missense_Mutation 108 0.12037037037037 0 TCGA-RD-A7C1-01 CSMD3 chr8 113323963 113314733 C T 0.96 0.607471009184815 1 DEL 1 Missense_Mutation 266 0.0864661654135338 0 TCGA-RD-A7C1-01 CUBN chr10 16874575 16874402 C T 1 0.952070225147883 1 DEL 1 Missense_Mutation 240 0.375 0 TCGA-RD-A7C1-01 CDH23 chr10 71807310 71800735 C T 0.64 0.265953712101694 0.973712147619152 DEL 1 Missense_Mutation 71 0.0704225352112676 0 TCGA-RD-A7C1-01 TENM4 chr11 78672093 78669786 C T 1 0.572109013769634 1 DEL 1 Missense_Mutation 77 0.12987012987013 0 TCGA-RD-A7C1-01 PCDH17 chr13 57728414 57724723 G A 1 0.564617631152412 1 DEL 1 Missense_Mutation 80 0.1375 0 TCGA-RD-A7C1-01 NALCN chr13 101149813 101143218 C G 1 0.686471260850438 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-RD-A7C1-01 DCC chr18 53453787 53450607 G C 1 0.73094253469293 1 DEL 1 Missense_Mutation 53 0.283018867924528 0 TCGA-RD-A7C1-01 PEG3 chr19 56819678 56814657 G T 1 0.668808902515835 1 DEL 1 Missense_Mutation 66 0.196969696969697 0 TCGA-CG-5722-01 OBSCN chr1 228373779 228372583 CAGAGCCCA - 1 0.449064260091129 1 DEL 1 Missense_Mutation 9 0.444444444444444 0 TCGA-CG-5722-01 TTN chr2 178563428 178561390 G C 0.66 0.464776336252401 0.910455147822353 DEL 0 Nonsense_Mutation 390 0.0769230769230769 1 TCGA-CG-5722-01 TTN chr2 178725701 178717245 G A 1 0.694054332731066 1 DEL 1 Missense_Mutation 119 0.159663865546218 0 TCGA-CG-5722-01 PIK3CA chr3 179227246 179218303 G A 1 0.617474081382352 1 DEL 1 Missense_Mutation 107 0.14018691588785 0 TCGA-CG-5722-01 COL12A1 chr6 75128469 75128394 A G 0.6 0.334751938633739 0.942424877284353 DEL 0 Nonsense_Mutation 158 0.069620253164557 1 TCGA-CG-5722-01 SYNE1 chr6 152360575 152352178 G A 0.95 0.686931974540743 1 DEL 1 Missense_Mutation 391 0.10997442455243 0 TCGA-CG-5722-01 NBEA chr13 35480808 35472475 C T 1 0.559284808903185 1 DEL 1 Missense_Mutation 65 0.153846153846154 0 TCGA-D7-A4YX-01 ARID1A chr1 26776231 26774705 GTTGCTCA - 1 0.944193435002648 1 DEL 1 Missense_Mutation 189 0.518518518518518 0 TCGA-D7-A4YX-01 SPTA1 chr1 158655519 158654723 C T 1 0.701833478876871 1 DEL 1 Missense_Mutation 76 0.315789473684211 0 TCGA-D7-A4YX-01 PIK3CA chr3 179202028 179199690 G A 0.9 0.513217993352371 1 DEL 1 Missense_Mutation 52 0.25 0 TCGA-D7-A4YX-01 PCDH10 chr4 133154367 133151927 C T 1 0.732201406238893 1 DEL 1 Missense_Mutation 87 0.32183908045977 0 TCGA-D7-A4YX-01 CMYA5 chr5 79753320 79745444 G A 1 0.797720841575306 1 DEL 1 Missense_Mutation 106 0.349056603773585 0 TCGA-D7-A4YX-01 FAT2 chr5 151526377 151521921 G C 0.75 0.475739175036412 0.975748174024213 DEL 1 Missense_Mutation 81 0.209876543209877 0 TCGA-D7-A4YX-01 TAF1L chr9 32635388 32633113 G A 0.89 0.616750564690387 1 DEL 1 Missense_Mutation 113 0.247787610619469 0 TCGA-D7-A4YX-01 LAMA1 chr18 6984905 6975033 C G 1 0.677597729756368 1 DEL 1 Missense_Mutation 27 0.518518518518518 0 TCGA-BR-8291-01 ARID1A chr1 26762702 26761411 CTCGGCCACCCAG - 0.78 0.280199440917172 0.983387197628976 DEL 1 Missense_Mutation 27 0.148148148148148 0 TCGA-BR-8291-01 CSMD1 chr8 3408852 3399445 C A 0.94 0.354034087392033 0.98848623150151 DEL 1 Missense_Mutation 28 0.178571428571429 0 TCGA-BR-8291-01 RYR1 chr19 38482130 38475397 G A 1 0.577974804645145 1 DEL 1 Missense_Mutation 23 0.347826086956522 0 TCGA-BR-7722-01 ARID1A chr1 26779273 26773709 - G 0.71 0.486161731302017 0.951619760999366 DEL 0 Nonsense_Mutation 99 0.232323232323232 1 TCGA-BR-7722-01 LRP2 chr2 169176712 169176490 G A 1 0.724651332673053 1 DEL 1 Missense_Mutation 70 0.371428571428571 0 TCGA-BR-7722-01 TMEM132D chr12 129086651 129078709 G A 1 0.773439080405534 1 DEL 1 Missense_Mutation 89 0.382022471910112 0 TCGA-BR-7722-01 SMAD4 chr18 51075409 51065555 G A 1 0.645609705104711 1 DEL 1 Missense_Mutation 34 0.5 0 TCGA-VQ-A8PZ-01 TTN chr2 178737188 178728348 T G 0.77 0.384373873032025 0.982676929085729 DEL 0 Nonsense_Mutation 39 0.205128205128205 1 TCGA-VQ-A8PZ-01 CSMD1 chr8 3580261 3574956 C A 0.25 0.0854432387904514 0.663270867560885 DEL 0 Nonsense_Mutation 45 0.0666666666666667 1 TCGA-VQ-A8PZ-01 GRM5 chr11 88571718 88567867 C T 0.7 0.371038489816305 0.974498598826605 DEL 0 Nonsense_Mutation 48 0.1875 1 TCGA-VQ-AA6B-01 LRP1B chr2 140774740 140770904 T G 0.86 0.565159592402287 0.988702809335748 DEL 1 Missense_Mutation 152 0.151315789473684 0 TCGA-VQ-AA6B-01 LRP1B chr2 141071797 141062079 T - 0.86 0.542217276568354 0.988951021739183 DEL 1 Missense_Mutation 125 0.152 0 TCGA-VQ-AA6B-01 NBEA chr13 35079821 35070747 T G 0.57 0.275160533433168 0.949190545349483 DEL 0 Nonsense_Mutation 82 0.0853658536585366 1 TCGA-VQ-AA6B-01 SLITRK5 chr13 87682366 87675791 C A 1 0.610173683289701 1 DEL 1 Missense_Mutation 133 0.150375939849624 0 TCGA-VQ-AA6B-01 DNAH3 chr16 20965439 20959252 C T 0.7 0.440261645702659 0.965042062625135 DEL 0 Nonsense_Mutation 137 0.124087591240876 1 TCGA-VQ-AA6B-01 TP53 chr17 7676513 7673806 C T 1 0.637736525083698 1 DEL 1 Missense_Mutation 11 0.727272727272727 0 TCGA-VQ-AA6B-01 DNAH9 chr17 11726439 11719437 G A 1 0.569184281660119 1 DEL 1 Missense_Mutation 24 0.375 0 TCGA-VQ-AA6B-01 LAMA1 chr18 7020030 7016617 C T 1 0.466617634806039 1 DEL 1 Missense_Mutation 23 0.304347826086957 0 TCGA-BR-A4J1-01 ADGRV1 chr5 90715391 90708874 C T 1 0.721821231293941 1 DEL 1 Missense_Mutation 89 0.348314606741573 0 TCGA-BR-8686-01 ARID1A chr1 26769535 26763003 C - 1 0.505215702287927 1 DEL 1 Missense_Mutation 23 0.304347826086957 0 TCGA-BR-8686-01 TTN chr2 178591314 178589954 C A 0.62 0.203559189627866 0.974053402360549 DEL 0 Nonsense_Mutation 22 0.136363636363636 1 TCGA-BR-8686-01 TTN chr2 178725668 178720502 G T 0.95 0.357737956704585 0.98865322649474 DEL 1 Missense_Mutation 24 0.208333333333333 0 TCGA-BR-8686-01 PIK3CA chr3 179203410 179199088 G A 1 0.759508801851918 1 DEL 1 Missense_Mutation 54 0.37037037037037 0 TCGA-BR-8686-01 FAT4 chr4 125494637 125490750 G A 0.63 0.238836248300907 0.972721593335099 DEL 0 Nonsense_Mutation 29 0.137931034482759 1 TCGA-BR-8686-01 FAM135B chr8 138158168 138152373 C T 0.65 0.273026685416173 0.97344919170226 DEL 0 Nonsense_Mutation 35 0.142857142857143 1 TCGA-BR-8686-01 PCDH15 chr10 53945315 53938869 C A 0.69 0.331675973101165 0.975936243570179 DEL 0 Nonsense_Mutation 46 0.152173913043478 1 TCGA-BR-8686-01 TMEM132D chr12 129340209 129337644 G A 0.3 0.142612091790237 0.581007237972542 DEL 0 Nonsense_Mutation 107 0.0654205607476635 1 TCGA-BR-8686-01 CDH1 chr16 68830286 68828254 C T 0.88 0.501294010063968 0.989595294819214 DEL 1 Missense_Mutation 67 0.194029850746269 0 TCGA-VQ-A928-01 PCLO chr7 83158686 83154950 C G 0.89 0.493141016655708 0.989842920287619 DEL 1 Missense_Mutation 162 0.0802469135802469 0 TCGA-VQ-A928-01 PCDH15 chr10 53836318 53831384 A T 1 0.733132069414924 1 DEL 1 Missense_Mutation 57 0.245614035087719 0 TCGA-VQ-A928-01 AHNAK2 chr14 104961448 104952021 G A 1 0.953048622155075 1 DEL 1 Missense_Mutation 311 0.315112540192926 0 TCGA-IN-7808-01 PCLO chr7 82957784 82950528 C A 1 0.468919832018201 1 DEL 1 Missense_Mutation 37 0.162162162162162 0 TCGA-IN-7808-01 CDH1 chr16 68818189 68811746 G T 1 0.811402445329169 1 DEL 1 Missense_Mutation 96 0.270833333333333 0 TCGA-IN-7808-01 TP53 chr17 7676124 7674220 C T 1 0.889711974553054 1 DEL 1 Missense_Mutation 106 0.367924528301887 0 TCGA-IN-7808-01 LAMA1 chr18 7045200 7037735 C G 1 0.449559116494712 1 DEL 1 Missense_Mutation 59 0.135593220338983 0 TCGA-IN-7808-01 ZNF208 chr19 21976872 21971790 C A 1 0.91986465475613 1 DEL 1 Missense_Mutation 191 0.31413612565445 0 TCGA-HU-8604-01 FLG chr1 152311718 152303790 C T 0.32 0.212664061990589 0.47018003971672 DEL 0 Nonsense_Mutation 207 0.106280193236715 1 TCGA-HU-8604-01 PXDN chr2 1646233 1639358 C A 0.72 0.366622687084342 0.977038845562056 DEL 0 Nonsense_Mutation 34 0.235294117647059 1 TCGA-HU-8604-01 NRXN1 chr2 50559176 50552876 G T 0.57 0.355294241031317 0.848999562704845 DEL 0 Nonsense_Mutation 86 0.186046511627907 1 TCGA-HU-8604-01 LRP1B chr2 140235240 140233236 C A 0.72 0.429773202949739 0.971895819013567 DEL 0 Nonsense_Mutation 55 0.236363636363636 1 TCGA-HU-8604-01 LRP1B chr2 140460315 140457641 T G 0.84 0.607955998747435 0.98591576618877 DEL 0 Nonsense_Mutation 116 0.275862068965517 1 TCGA-HU-8604-01 LRP1B chr2 140996825 140994062 T G 0.63 0.422150480602304 0.879870915524735 DEL 0 Nonsense_Mutation 107 0.205607476635514 1 TCGA-HU-8604-01 LRP2 chr2 169209937 169206924 C A 0.35 0.217248025280895 0.545007682564503 DEL 0 Nonsense_Mutation 138 0.115942028985507 1 TCGA-HU-8604-01 APC chr5 112843515 112839979 - AG 0.45 0.239590352013602 0.779003001316102 DEL 0 Nonsense_Mutation 61 0.147540983606557 1 TCGA-HU-8604-01 PCLO chr7 82917278 82914765 T G 0.98 0.508596363062222 1 DEL 0 Nonsense_Mutation 31 0.32258064516129 1 TCGA-HU-8604-01 ZFHX4 chr8 76864236 76855096 G T 0.59 0.292173546959368 0.949666767832946 DEL 0 Nonsense_Mutation 36 0.194444444444444 1 TCGA-HU-8604-01 RIMS2 chr8 103977080 103975473 G T 0.68 0.408087548168077 0.960813859863816 DEL 0 Nonsense_Mutation 58 0.224137931034483 1 TCGA-HU-8604-01 TG chr8 133103860 133095085 G T 0.28 0.176901721524723 0.428273250994137 DEL 0 Nonsense_Mutation 194 0.0927835051546392 1 TCGA-HU-8604-01 PCDH15 chr10 54197526 54195808 A G 0.28 0.118035157117651 0.593690017655671 DEL 0 Nonsense_Mutation 55 0.0909090909090909 1 TCGA-HU-8604-01 LRRK2 chr12 40325378 40321075 A T 0.2 0.113709071790585 0.341572058808926 DEL 0 Nonsense_Mutation 179 0.0670391061452514 1 TCGA-HU-8604-01 DCLK1 chr13 35863409 35854524 C A 0.23 0.0973037170320402 0.500364580508202 DEL 0 Nonsense_Mutation 66 0.0757575757575758 1 TCGA-HU-8604-01 PCDH17 chr13 57637165 57633280 C T 0.37 0.208677471112129 0.623703910457006 DEL 0 Nonsense_Mutation 90 0.122222222222222 1 TCGA-HU-8604-01 PCDH17 chr13 57728931 57724993 A C 0.28 0.154343016630793 0.473734523833157 DEL 0 Nonsense_Mutation 120 0.0916666666666667 1 TCGA-HU-8604-01 TP53 chr17 7676435 7676267 G - 1 0.790559688038794 1 DEL 1 Missense_Mutation 170 0.341176470588235 0 TCGA-HU-8604-01 LAMA1 chr18 7045470 7036009 G A 1 0.603778147680974 1 DEL 1 Missense_Mutation 35 0.371428571428571 0 TCGA-HU-8604-01 PEG3 chr19 56832444 56824379 G T 0.84 0.616746629890581 0.98532355517382 DEL 0 Nonsense_Mutation 127 0.275590551181102 1 TCGA-BR-4371-01 LRP2 chr2 169178736 169174011 C T 1 0.840574148787638 1 DEL 1 Missense_Mutation 67 0.432835820895522 0 TCGA-BR-4371-01 TTN chr2 178610066 178607096 G A 0.9 0.677175425003436 1 DEL 1 Missense_Mutation 255 0.188235294117647 0 TCGA-BR-4371-01 PIK3CA chr3 179225617 179218303 G A 1 0.655066456397417 1 DEL 1 Missense_Mutation 86 0.232558139534884 0 TCGA-BR-4371-01 PIK3CA chr3 179236029 179234297 A G 0.81 0.52336116279675 0.984348085217397 DEL 1 Missense_Mutation 118 0.169491525423729 0 TCGA-BR-4371-01 DOCK2 chr5 170069196 170067634 T C 1 0.760829184143818 1 DEL 1 Missense_Mutation 194 0.22680412371134 0 TCGA-BR-4371-01 DOCK2 chr5 170083292 170077820 C A 1 0.73442798891847 1 DEL 1 Missense_Mutation 82 0.280487804878049 0 TCGA-BR-4371-01 RELN chr7 103600016 103594413 C T 1 0.981525123973188 1 DEL 1 Missense_Mutation 513 0.53411306042885 0 TCGA-BR-4371-01 RP1 chr8 54635552 54628417 A C 1 0.883925018391816 1 DEL 1 Missense_Mutation 155 0.283870967741935 0 TCGA-BR-4371-01 PREX2 chr8 68095153 68090650 A T 1 0.970137211312057 1 DEL 0 Silent 219 0.611872146118721 0 TCGA-BR-4371-01 CUBN chr10 16871316 16869647 C T 0.58 0.437420390160873 0.753189734112567 DEL 0 Nonsense_Mutation 377 0.122015915119363 1 TCGA-BR-4371-01 DNAH9 chr17 11785014 11784456 C T 0.95 0.723848183272607 1 DEL 1 Missense_Mutation 276 0.199275362318841 0 TCGA-BR-4371-01 MUC16 chr19 8960802 8958304 C T 1 0.88743923496736 1 DEL 1 Missense_Mutation 136 0.345588235294118 0 TCGA-BR-8676-01 LRP1B chr2 140524668 140514683 C T 0.68 0.43210876837926 0.95188544129761 DEL 0 Nonsense_Mutation 91 0.186813186813187 1 TCGA-BR-8676-01 PIK3CA chr3 179219149 179210291 G A 1 0.947758306175748 1 DEL 1 Missense_Mutation 146 0.561643835616438 0 TCGA-BR-8676-01 PIK3CA chr3 179221389 179218294 G A 1 0.907285878283326 1 DEL 0 Silent 78 0.564102564102564 0 TCGA-BR-8676-01 FAT4 chr4 125470667 125468674 A G 1 0.789982782562496 1 DEL 1 Missense_Mutation 102 0.343137254901961 0 TCGA-BR-8676-01 PCDH10 chr4 133157329 133151518 G A 1 0.849623839571944 1 DEL 1 Missense_Mutation 272 0.305147058823529 0 TCGA-BR-8676-01 DCHS2 chr4 154336114 154333345 C T 0.84 0.623833941911606 0.985293129187427 DEL 1 Missense_Mutation 169 0.230769230769231 0 TCGA-BR-8676-01 FAT3 chr11 92364780 92355365 G A 0.49 0.249137591900598 0.85943463344832 DEL 0 Nonsense_Mutation 60 0.133333333333333 1 TCGA-BR-8676-01 DSEL chr18 67515465 67512018 C T 0.88 0.690522364851007 0.98990892720514 DEL 1 Missense_Mutation 235 0.242553191489362 0 TCGA-CG-4449-01 FLG2 chr1 152357913 152355772 C T 1 0.953506040541418 1 DEL 1 Missense_Mutation 481 0.288981288981289 0 TCGA-CG-4449-01 RYR2 chr1 237616889 237610871 G A 1 0.712312713684977 1 DEL 1 Missense_Mutation 39 0.333333333333333 0 TCGA-CG-4449-01 XIRP2 chr2 167259970 167250670 G A 1 0.8561570252785 1 DEL 1 Missense_Mutation 146 0.273972602739726 0 TCGA-CG-4449-01 ZFHX4 chr8 76860408 76854842 G A 1 0.788082136712914 1 DEL 1 Missense_Mutation 79 0.291139240506329 0 TCGA-CG-4449-01 GRM5 chr11 89052077 89047460 C T 1 0.629906794030101 1 DEL 1 Missense_Mutation 87 0.183908045977011 0 TCGA-CG-4449-01 TP53 chr17 7681796 7674214 G A 1 0.927264190495363 1 DEL 0 Silent 100 0.56 0 TCGA-D7-A4YU-01 SPTA1 chr1 158640973 158636756 T G 1 0.895958143427826 1 DEL 1 Missense_Mutation 139 0.316546762589928 0 TCGA-D7-A4YU-01 THSD7B chr2 137099102 137095096 G A 1 0.700860880320215 1 DEL 1 Missense_Mutation 50 0.26 0 TCGA-D7-A4YU-01 TTN chr2 178538524 178533734 G T 1 0.645180611896588 1 DEL 1 Missense_Mutation 50 0.22 0 TCGA-D7-A4YU-01 TTN chr2 178578076 178570045 G T 0.64 0.266023386615124 0.973662113074946 DEL 1 Missense_Mutation 69 0.072463768115942 0 TCGA-D7-A4YU-01 TTN chr2 178580244 178578859 T C 1 0.847821322170535 1 DEL 1 Missense_Mutation 126 0.253968253968254 0 TCGA-D7-A4YU-01 UTRN chr6 144489934 144479952 A C 1 0.810201056917586 1 DEL 1 Missense_Mutation 93 0.268817204301075 0 TCGA-D7-A4YU-01 SDK1 chr7 4187828 4178495 G T 1 0.705803137961127 1 DEL 1 Missense_Mutation 228 0.12719298245614 0 TCGA-D7-A4YU-01 SDK1 chr7 4210219 4208237 G A 1 0.51196800588013 1 DEL 1 Missense_Mutation 67 0.134328358208955 0 TCGA-D7-A4YU-01 PCLO chr7 82924689 82916397 T G 1 0.933292073755222 1 DEL 1 Missense_Mutation 366 0.237704918032787 0 TCGA-D7-A4YU-01 RELN chr7 103510108 103503147 C T 1 0.787905350874666 1 DEL 1 Missense_Mutation 82 0.25609756097561 0 TCGA-D7-A4YU-01 FAM135B chr8 138253354 138250878 G A 1 0.58271967821382 1 DEL 1 Missense_Mutation 136 0.117647058823529 0 TCGA-D7-A4YU-01 CUBN chr10 17021985 17019929 G T 0.72 0.352594303108624 0.979383351298363 DEL 1 Missense_Mutation 154 0.051948051948052 0 TCGA-D7-A4YU-01 FAT3 chr11 92810107 92801720 T G 1 0.826484321317188 1 DEL 1 Missense_Mutation 77 0.324675324675325 0 TCGA-D7-A4YU-01 LRRK2 chr12 40299682 40298363 T C 1 0.518415010497234 1 DEL 1 Missense_Mutation 79 0.126582278481013 0 TCGA-D7-A4YU-01 CDH1 chr16 68818102 68808512 C T 1 0.660543066027785 1 DEL 1 Missense_Mutation 82 0.182926829268293 0 TCGA-D7-A4YU-01 TP53 chr17 7678043 7674957 G A 1 0.778205313437656 1 DEL 1 Missense_Mutation 40 0.425 0 TCGA-D7-A4YU-01 ZNF208 chr19 21981549 21974393 G T 1 0.6478694210755 1 DEL 1 Missense_Mutation 61 0.19672131147541 0 TCGA-HU-A4H5-01 APOB chr2 21019114 21011151 G A 1 0.943718713161963 1 DEL 1 Missense_Mutation 143 0.594405594405594 0 TCGA-HU-A4H5-01 CTNNB1 chr3 41228981 41224609 T C 1 0.846942456114319 1 DEL 1 Missense_Mutation 57 0.473684210526316 0 TCGA-HU-A4H5-01 SYNE1 chr6 152332328 152331888 G A 1 0.724448848149782 1 DEL 1 Missense_Mutation 139 0.18705035971223 0 TCGA-HU-A4H5-01 DNAH11 chr7 21737021 21735757 G T 1 0.864019632402948 1 DEL 1 Missense_Mutation 84 0.404761904761905 0 TCGA-HU-A4H5-01 PCLO chr7 82926324 82916419 G C 1 0.800975461219193 1 DEL 1 Missense_Mutation 265 0.233962264150943 0 TCGA-HU-A4H5-01 NALCN chr13 101075148 101067921 T A 0.94 0.505904323357622 1 DEL 1 Missense_Mutation 84 0.142857142857143 0 TCGA-HU-A4H5-01 KIF2B chr17 53830993 53823589 G A 1 0.936533768884221 1 DEL 1 Missense_Mutation 166 0.433734939759036 0 TCGA-HU-A4H5-01 ZNF536 chr19 30549102 30548127 C A 1 0.853506906650472 1 DEL 1 Missense_Mutation 164 0.274390243902439 0 TCGA-HU-A4H5-01 RYR1 chr19 38572449 38572154 A T 1 0.89388503536697 1 DEL 1 Missense_Mutation 195 0.302564102564103 0 TCGA-HU-A4H5-01 PTPRT chr20 42764885 42756537 C T 1 0.793724309687634 1 DEL 1 Missense_Mutation 105 0.219047619047619 0 TCGA-HU-A4G2-01 PIK3CA chr3 179201943 179198938 G A 0.45 0.25736275960498 0.73297876514226 DEL 0 Nonsense_Mutation 97 0.123711340206186 1 TCGA-HU-A4G2-01 SMAD4 chr18 51074720 51067027 T G 0.93 0.669672358943457 1 DEL 1 Missense_Mutation 90 0.355555555555556 0 TCGA-HU-A4G2-01 MUC16 chr19 8980669 8975369 T C 0.46 0.214010384617523 0.87441900012871 DEL 0 Nonsense_Mutation 47 0.127659574468085 1 TCGA-RD-A7BT-01 COL11A1 chr1 102882223 102878019 T G 1 0.58340364365391 1 DEL 1 Missense_Mutation 56 0.196428571428571 0 TCGA-RD-A7BT-01 USH2A chr1 216207786 216199975 T G 1 0.852411977977865 1 DEL 1 Missense_Mutation 126 0.285714285714286 0 TCGA-RD-A7BT-01 THSD7B chr2 137629452 137620622 A C 1 0.735873829504358 1 DEL 1 Missense_Mutation 94 0.223404255319149 0 TCGA-RD-A7BT-01 LRP1B chr2 140380463 140373020 T G 1 0.838361603531489 1 DEL 1 Missense_Mutation 119 0.277310924369748 0 TCGA-RD-A7BT-01 TTN chr2 178560572 178558633 T G 1 0.365195060670638 1 DEL 1 Missense_Mutation 20 0.2 0 TCGA-RD-A7BT-01 TTN chr2 178623269 178619999 A C 1 0.49379066679548 1 DEL 1 Missense_Mutation 56 0.160714285714286 0 TCGA-RD-A7BT-01 TTN chr2 178785119 178776522 T G 0.93 0.500278250761914 1 DEL 1 Missense_Mutation 87 0.137931034482759 0 TCGA-RD-A7BT-01 FAT4 chr4 125501289 125491438 A C 1 0.791117249887981 1 DEL 1 Missense_Mutation 56 0.357142857142857 0 TCGA-RD-A7BT-01 CMYA5 chr5 79741366 79734383 A G 1 0.521707307019798 1 DEL 1 Missense_Mutation 50 0.18 0 TCGA-RD-A7BT-01 DOCK2 chr5 170048530 170041058 C G 1 0.660956384306933 1 DEL 1 Missense_Mutation 39 0.307692307692308 0 TCGA-RD-A7BT-01 SYNE1 chr6 152221559 152220990 A C 0.76 0.373652000860122 0.982881332613866 DEL 1 Missense_Mutation 81 0.0987654320987654 0 TCGA-RD-A7BT-01 PCLO chr7 82923102 82916780 T G 0.64 0.343366689327138 0.961576582703376 DEL 1 Missense_Mutation 153 0.065359477124183 0 TCGA-RD-A7BT-01 ZFHX4 chr8 76856148 76854857 A T 1 0.897858984278406 1 DEL 1 Missense_Mutation 71 0.535211267605634 0 TCGA-RD-A7BT-01 CSMD3 chr8 112273429 112265554 C A 1 0.682202829600798 1 DEL 1 Missense_Mutation 113 0.168141592920354 0 TCGA-RD-A7BT-01 SACS chr13 23341425 23337793 T G 1 0.618831763221046 1 DEL 1 Missense_Mutation 59 0.186440677966102 0 TCGA-RD-A7BT-01 NBEA chr13 35570342 35566976 T G 1 0.814863450311046 1 DEL 1 Missense_Mutation 127 0.220472440944882 0 TCGA-BR-8588-01 HMCN1 chr1 186134477 186129974 G T 1 0.868037337739515 1 DEL 1 Missense_Mutation 127 0.267716535433071 0 TCGA-BR-8588-01 TTN chr2 178735993 178730652 C A 1 0.799078408441952 1 DEL 1 Missense_Mutation 110 0.227272727272727 0 TCGA-BR-8588-01 PIK3CA chr3 179207463 179199156 A G 1 0.565600126780198 1 DEL 1 Missense_Mutation 83 0.132530120481928 0 TCGA-BR-8588-01 ADGRV1 chr5 90768845 90763392 G A 0.98 0.389612673919301 0.989685134731916 DEL 1 Missense_Mutation 52 0.115384615384615 0 TCGA-BR-8588-01 FAT2 chr5 151524588 151522001 G T 1 0.481864426966724 1 DEL 1 Missense_Mutation 45 0.155555555555556 0 TCGA-BR-8588-01 GLI3 chr7 41968795 41967886 C A 1 0.716138142972112 1 DEL 1 Missense_Mutation 181 0.143646408839779 0 TCGA-BR-8588-01 CSMD3 chr8 112929270 112921695 T C 1 0.770786774795054 1 DEL 1 Missense_Mutation 102 0.205882352941176 0 TCGA-BR-8588-01 RYR1 chr19 38506539 38502546 C T 0.59 0.194337724460956 0.972602466144377 DEL 1 Missense_Mutation 43 0.0697674418604651 0 TCGA-BR-4369-01 SPTA1 chr1 158620668 158620328 C - 0.97 0.558588287752603 1 DEL 1 Missense_Mutation 133 0.120300751879699 0 TCGA-BR-4369-01 SPTA1 chr1 158642627 158636744 A C 1 0.914613559472391 1 DEL 1 Missense_Mutation 299 0.237458193979933 0 TCGA-BR-4369-01 NCKAP5 chr2 132790450 132782406 A G 0.73 0.412524439910935 0.977371874655354 DEL 1 Missense_Mutation 116 0.103448275862069 0 TCGA-BR-4369-01 ADGRV1 chr5 90827414 90823531 G C 0.64 0.33505642722756 0.964210513384162 DEL 1 Missense_Mutation 99 0.0909090909090909 0 TCGA-BR-4369-01 APC chr5 112841711 112841353 G A 0.89 0.484341701909212 0.989642746081282 DEL 1 Missense_Mutation 95 0.126315789473684 0 TCGA-BR-4369-01 ABCA13 chr7 48514422 48511165 T G 1 0.80037185719231 1 DEL 1 Missense_Mutation 132 0.212121212121212 0 TCGA-BR-4369-01 RIMS2 chr8 104256250 104251156 T A 1 0.588352406518068 1 DEL 1 Missense_Mutation 41 0.219512195121951 0 TCGA-BR-4369-01 CSMD3 chr8 112924622 112921718 T G 1 0.944379503825941 1 DEL 1 Missense_Mutation 267 0.333333333333333 0 TCGA-BR-4369-01 TRPS1 chr8 115593588 115587451 T G 1 0.971389524737513 1 DEL 0 Silent 535 0.338317757009346 0 TCGA-BR-4369-01 TLR4 chr9 117717685 117713620 T G 1 0.838577198050266 1 DEL 1 Missense_Mutation 179 0.223463687150838 0 TCGA-BR-4369-01 CUBN chr10 17053919 17045093 T G 1 0.867095735775864 1 DEL 1 Missense_Mutation 158 0.253164556962025 0 TCGA-BR-4369-01 FAT3 chr11 92888644 92883352 G A 1 0.849621433217068 1 DEL 0 Silent 42 0.571428571428571 0 TCGA-BR-4369-01 SACS chr13 23334378 23331469 A C 1 0.905931315127325 1 DEL 1 Missense_Mutation 250 0.26 0 TCGA-BR-4369-01 EPB41L3 chr18 5422872 5419835 T C 1 0.88248407121303 1 DEL 1 Missense_Mutation 240 0.2 0 TCGA-BR-4369-01 MUC16 chr19 8982134 8973348 C A 1 0.765397271717032 1 DEL 1 Missense_Mutation 116 0.21551724137931 0 TCGA-BR-4369-01 ZNF208 chr19 21975099 21973642 C T 1 0.780395190655576 1 DEL 1 Missense_Mutation 157 0.197452229299363 0 TCGA-CG-4466-01 FLG chr1 152315790 152307483 G C 1 0.864832828776507 1 DEL 1 Missense_Mutation 944 0.177966101694915 0 TCGA-CG-4466-01 SPTA1 chr1 158663195 158657528 C A 0.81 0.602060809676496 0.980045211976382 DEL 1 Missense_Mutation 236 0.169491525423729 0 TCGA-CG-4466-01 USH2A chr1 216250127 216247044 A C 1 0.771642199166298 1 DEL 1 Missense_Mutation 166 0.192771084337349 0 TCGA-CG-4466-01 NEB chr2 151649768 151643238 C T 1 0.92452542442101 1 DEL 1 Missense_Mutation 241 0.352697095435685 0 TCGA-CG-4466-01 TTN chr2 178621159 178614169 A G 0.8 0.41051558847912 0.985010205588126 DEL 1 Missense_Mutation 54 0.166666666666667 0 TCGA-CG-4466-01 FAT4 chr4 125457713 125448955 C T 1 0.935986181467297 1 DEL 0 Silent 69 0.855072463768116 0 TCGA-CG-4466-01 PCDH10 chr4 133155320 133150856 G A 1 0.775723441623332 1 DEL 1 Missense_Mutation 79 0.354430379746835 0 TCGA-CG-4466-01 CTNND2 chr5 11366495 11364842 T C 0.72 0.442730082729254 0.972295644848937 DEL 1 Missense_Mutation 151 0.105960264900662 0 TCGA-CG-4466-01 SYNE1 chr6 152434305 152425533 T G 1 0.802110612210073 1 DEL 1 Missense_Mutation 129 0.27906976744186 0 TCGA-CG-4466-01 PCLO chr7 82961695 82956362 T G 0.98 0.60083430482836 1 DEL 1 Missense_Mutation 93 0.204301075268817 0 TCGA-CG-4466-01 PCLO chr7 82973249 82966072 T G 1 0.896842148568238 1 DEL 1 Missense_Mutation 493 0.247464503042596 0 TCGA-CG-4466-01 RP1 chr8 54634267 54627874 A T 1 0.804697004149001 1 DEL 1 Missense_Mutation 279 0.197132616487455 0 TCGA-CG-4466-01 RIMS2 chr8 104259970 104251085 A C 1 0.654863221349649 1 DEL 1 Missense_Mutation 72 0.222222222222222 0 TCGA-CG-4466-01 TRPS1 chr8 115623992 115619208 C T 1 0.885284461351788 1 DEL 1 Missense_Mutation 102 0.401960784313726 0 TCGA-CG-4466-01 TLR4 chr9 117721886 117713638 T C 1 0.735037096859825 1 DEL 1 Missense_Mutation 169 0.195266272189349 0 TCGA-CG-4466-01 PCDH15 chr10 53868269 53866696 T G 1 0.720090643685404 1 DEL 1 Missense_Mutation 55 0.418181818181818 0 TCGA-CG-4466-01 FAT3 chr11 92807061 92800527 T C 0.96 0.467343425435968 1 DEL 1 Missense_Mutation 45 0.2 0 TCGA-CG-4466-01 DCLK1 chr13 36118306 36112161 T C 0.68 0.439212554553922 0.951277697053937 DEL 0 Nonsense_Mutation 100 0.18 1 TCGA-CG-4466-01 TP53 chr17 7679404 7675157 G - 1 0.953208128504086 1 DEL 0 Silent 93 0.870967741935484 0 TCGA-CG-4466-01 DCC chr18 53307805 53305666 G A 1 0.945037981566765 1 DEL 0 Silent 79 0.873417721518987 0 TCGA-CG-4466-01 MUC16 chr19 8983284 8978547 T G 1 0.883584367070849 1 DEL 1 Missense_Mutation 62 0.596774193548387 0 TCGA-CG-4466-01 ZNF208 chr19 21974928 21973319 T G 0.93 0.480910179563116 1 DEL 1 Missense_Mutation 41 0.24390243902439 0 TCGA-CG-4466-01 ZNF208 chr19 21977087 21973521 C A 1 0.727272763910956 1 DEL 1 Missense_Mutation 93 0.301075268817204 0 TCGA-3M-AB46-01 FLG chr1 152312005 152307565 - A 1 0.855133391013481 1 DEL 1 Missense_Mutation 514 0.25875486381323 0 TCGA-3M-AB46-01 FLG chr1 152318682 152308732 C G 1 0.916740350692404 1 DEL 1 Missense_Mutation 734 0.279291553133515 0 TCGA-3M-AB46-01 RYR2 chr1 237456569 237454434 G T 0.97 0.594077078846829 1 DEL 1 Missense_Mutation 74 0.243243243243243 0 TCGA-3M-AB46-01 LRP1B chr2 140601319 140598814 C A 1 0.647183862608435 1 DEL 1 Missense_Mutation 62 0.338709677419355 0 TCGA-3M-AB46-01 LRP1B chr2 140887197 140886167 A G 0.99 0.654039522179066 1 DEL 1 Missense_Mutation 73 0.328767123287671 0 TCGA-3M-AB46-01 TTN chr2 178725929 178721861 T A 1 0.80717299882382 1 DEL 1 Missense_Mutation 210 0.342857142857143 0 TCGA-3M-AB46-01 CMYA5 chr5 79745590 79736145 G C 1 0.706565709924779 1 DEL 1 Missense_Mutation 51 0.509803921568627 0 TCGA-3M-AB46-01 ADGRB3 chr6 68961981 68956725 A T 1 0.821878580408054 1 DEL 1 Missense_Mutation 101 0.356435643564356 0 TCGA-3M-AB46-01 CSMD3 chr8 112640652 112636852 C T 1 0.642993930608088 1 DEL 1 Missense_Mutation 92 0.25 0 TCGA-3M-AB46-01 TENM4 chr11 78807489 78805484 T G 0.86 0.307432790971479 0.986010222650981 DEL 1 Missense_Mutation 14 0.285714285714286 0 TCGA-3M-AB46-01 TP53 chr17 7678359 7673778 CGGT - 0.74 0.368314898298883 0.977991978929416 DEL 1 Missense_Mutation 19 0.368421052631579 0 TCGA-D7-6815-01 FLG chr1 152314560 152306542 C T 0.34 0.271488825840242 0.408965066367709 DEL 0 Nonsense_Mutation 1157 0.0751944684528954 1 TCGA-D7-6815-01 FLG chr1 152315775 152307048 C A 0.82 0.530777531306074 0.985519049444639 DEL 1 Missense_Mutation 110 0.181818181818182 0 TCGA-D7-6815-01 APOB chr2 21015729 21007461 C T 0.42 0.255965617459587 0.648606488195736 DEL 0 Nonsense_Mutation 173 0.092485549132948 1 TCGA-D7-6815-01 COL6A3 chr2 237375966 237371823 - G 0.64 0.414007972667816 0.922443556811688 DEL 0 Nonsense_Mutation 98 0.183673469387755 1 TCGA-D7-6815-01 PIK3CA chr3 179221236 179218303 G A 0.76 0.469176547945445 0.978669000831902 DEL 1 Missense_Mutation 95 0.168421052631579 0 TCGA-D7-6815-01 FAT2 chr5 151531431 151528064 G T 1 0.940398878901155 1 DEL 0 Silent 98 0.714285714285714 0 TCGA-D7-6815-01 SYNE1 chr6 152333843 152330605 A T 0.89 0.45849383783763 0.989250447123706 DEL 1 Missense_Mutation 62 0.161290322580645 0 TCGA-D7-6815-01 DNAH11 chr7 21744013 21739581 C A 1 0.884818833565919 1 DEL 1 Missense_Mutation 106 0.424528301886792 0 TCGA-D7-6815-01 SACS chr13 23359802 23355150 G A 0.43 0.253650271846884 0.706520461430089 DEL 0 Nonsense_Mutation 135 0.0962962962962963 1 TCGA-D7-6815-01 DCLK1 chr13 35873703 35871259 G T 0.48 0.32186220922192 0.685631200117718 DEL 0 Nonsense_Mutation 226 0.106194690265487 1 TCGA-D7-6815-01 TP53 chr17 7682936 7675088 C T 1 0.941717378820776 1 DEL 0 Silent 74 0.864864864864865 0 TCGA-D7-6815-01 SMAD4 chr18 51071780 51067112 - T 1 0.752973499355035 1 DEL 1 Missense_Mutation 46 0.434782608695652 0 TCGA-D7-6815-01 SMAD4 chr18 51079656 51078304 G A 0.88 0.560992271066169 0.989882957977722 DEL 1 Missense_Mutation 76 0.25 0 TCGA-BR-8486-01 FLG chr1 152310399 152306769 - TCGTG 1 0.405845061724005 1 DEL 1 Missense_Mutation 46 0.108695652173913 0 TCGA-BR-8486-01 APOB chr2 21021779 21013422 - TTACCACA 0.69 0.251895136684196 0.97897836469043 DEL 1 Missense_Mutation 66 0.0606060606060606 0 TCGA-BR-8486-01 LRP1B chr2 140377065 140371226 A G 1 0.517974593691509 1 DEL 0 Silent 11 0.454545454545455 0 TCGA-BR-8486-01 ADGRV1 chr5 90864927 90855865 - ACTGAAGGTGTTGA 0.89 0.297340612403795 0.986412374967067 DEL 1 Missense_Mutation 51 0.0784313725490196 0 TCGA-BR-8486-01 PKHD1 chr6 52043904 52035709 G T 1 0.627819424199231 1 DEL 1 Missense_Mutation 39 0.230769230769231 0 TCGA-BR-8486-01 PCLO chr7 82957081 82953302 C T 1 0.687339691198263 1 DEL 1 Missense_Mutation 59 0.203389830508475 0 TCGA-BR-8486-01 ZFHX4 chr8 76857735 76852919 - GTA 1 0.23138680128248 0.988254757350364 DEL 1 Missense_Mutation 16 0.125 0 TCGA-BR-8486-01 CSMD3 chr8 112583261 112573634 - AAAATGGCCAAACA 0.79 0.274964043651315 0.983563672542236 DEL 1 Missense_Mutation 68 0.0588235294117647 0 TCGA-BR-8486-01 GRM5 chr11 88567817 88567269 G T 0.9 0.337080604735796 0.987418481720744 DEL 1 Missense_Mutation 63 0.0793650793650794 0 TCGA-BR-8486-01 NBEA chr13 35166737 35157227 - AAAAAAATTT 1 0.356879143580511 1 DEL 1 Missense_Mutation 37 0.108108108108108 0 TCGA-BR-8486-01 TP53 chr17 7680500 7676078 - C 1 0.922150840420164 1 DEL 0 Silent 93 0.526881720430108 0 TCGA-HF-7131-01 SPTA1 chr1 158650725 158645539 C A 1 0.945473711899497 1 DEL 1 Missense_Mutation 211 0.402843601895735 0 TCGA-HF-7131-01 TTN chr2 178580341 178579034 C A 1 0.550081934128719 1 DEL 1 Missense_Mutation 28 0.285714285714286 0 TCGA-HF-7131-01 CSMD3 chr8 112410406 112406664 A G 0.57 0.358904052232714 0.876344949656916 DEL 0 Nonsense_Mutation 219 0.0776255707762557 1 TCGA-HF-7131-01 FAT3 chr11 92845389 92836684 A C 1 0.651015787969035 1 DEL 1 Missense_Mutation 54 0.240740740740741 0 TCGA-HF-7131-01 TP53 chr17 7675307 7675229 G - 1 0.800654064555909 1 DEL 1 Missense_Mutation 43 0.465116279069767 0 TCGA-HF-7131-01 DNAH9 chr17 11881775 11881250 A C 1 0.775201089225266 1 DEL 1 Missense_Mutation 81 0.296296296296296 0 TCGA-HF-7131-01 MUC16 chr19 8980033 8977139 T G 1 0.71600663653974 1 DEL 1 Missense_Mutation 56 0.267857142857143 0 TCGA-CD-5803-01 ARID1A chr1 26742453 26732685 C T 0.8 0.493259399717427 0.984266327972501 DEL 1 Missense_Mutation 147 0.115646258503401 0 TCGA-CD-5803-01 CNTNAP5 chr2 124909856 124902950 G A 1 0.363032006856679 0.989490718601584 DEL 1 Missense_Mutation 39 0.128205128205128 0 TCGA-CD-5803-01 SMAD4 chr18 51070991 51065579 CTTTTGTTTGGGTCAACTCTCCAATGTCCA - 1 0.710032456958338 1 DEL 1 Missense_Mutation 152 0.171052631578947 0 TCGA-D7-A747-01 PXDN chr2 1665339 1661037 C T 0.99 0.394076628293219 0.989954258757634 DEL 1 Missense_Mutation 45 0.133333333333333 0 TCGA-D7-A747-01 LRP1B chr2 140326281 140321992 T G 0.75 0.348282003538147 0.981747280320891 DEL 0 Nonsense_Mutation 70 0.1 1 TCGA-D7-A747-01 CTNNB1 chr3 41242791 41236409 G C 0.69 0.371572283816354 0.973418780415622 DEL 0 Nonsense_Mutation 108 0.0925925925925926 1 TCGA-D7-A747-01 PIK3CA chr3 179220332 179218303 G A 0.99 0.394076628293219 0.989954258757634 DEL 1 Missense_Mutation 45 0.133333333333333 0 TCGA-D7-A747-01 CMYA5 chr5 79741934 79734717 A C 0.7 0.329459940605782 0.977350260187969 DEL 0 Nonsense_Mutation 75 0.0933333333333333 1 TCGA-D7-A747-01 SYNE1 chr6 152242998 152239567 T G 0.61 0.331769132186727 0.951500095968493 DEL 0 Nonsense_Mutation 122 0.0819672131147541 1 TCGA-D7-A747-01 SYNE1 chr6 152487952 152483098 A G 0.75 0.518405103485833 0.968940952304938 DEL 0 Nonsense_Mutation 279 0.100358422939068 1 TCGA-D7-A747-01 RP1 chr8 54634181 54627679 A G 0.51 0.292857097560485 0.853024697839499 DEL 0 Nonsense_Mutation 198 0.0606060606060606 1 TCGA-D7-A747-01 KIF2B chr17 53830831 53823692 A C 0.75 0.300456963273271 0.982009481311006 DEL 0 Nonsense_Mutation 50 0.1 1 TCGA-D7-A747-01 KIF2B chr17 53827255 53824251 A G 0.49 0.210176855407504 0.933208696729851 DEL 0 Nonsense_Mutation 76 0.0657894736842105 1 TCGA-BR-A4J4-01 CMYA5 chr5 79737566 79737435 C A 1 0.646919795792144 1 DEL 1 Missense_Mutation 99 0.222222222222222 0 TCGA-BR-A4J4-01 CUBN chr10 16952901 16948549 G A 0.85 0.411331631697149 0.987363854323092 DEL 1 Missense_Mutation 44 0.181818181818182 0 TCGA-R5-A805-01 FMN2 chr1 240099764 240092226 C A 1 0.563436757248111 1 DEL 1 Missense_Mutation 11 0.545454545454545 0 TCGA-R5-A805-01 LRP1B chr2 141059590 141058999 G A 1 0.764247270807848 1 DEL 1 Missense_Mutation 108 0.222222222222222 0 TCGA-R5-A805-01 TTN chr2 178537052 178532815 C T 0.59 0.192947396976619 0.971559589375155 DEL 1 Missense_Mutation 36 0.0833333333333333 0 TCGA-R5-A805-01 TTN chr2 178714632 178712587 G T 0.92 0.257615796657966 0.985919976166287 DEL 1 Missense_Mutation 23 0.130434782608696 0 TCGA-R5-A805-01 TTN chr2 178778359 178774932 A C 1 0.485878807357788 1 DEL 1 Missense_Mutation 60 0.15 0 TCGA-R5-A805-01 PCDH10 chr4 133152927 133151086 T G 1 0.727651043284835 1 DEL 1 Missense_Mutation 40 0.35 0 TCGA-R5-A805-01 CSMD3 chr8 112643468 112638767 T C 1 0.871898856367744 1 DEL 1 Missense_Mutation 96 0.354166666666667 0 TCGA-R5-A805-01 DNAH9 chr17 11616581 11608261 A C 1 0.867415933530671 1 DEL 1 Missense_Mutation 133 0.293233082706767 0 TCGA-R5-A805-01 DSEL chr18 67513964 67512659 T G 1 0.71026161015399 1 DEL 1 Missense_Mutation 65 0.246153846153846 0 TCGA-R5-A805-01 MUC16 chr19 8957387 8952466 T G 1 0.781917403221396 1 DEL 1 Missense_Mutation 72 0.291666666666667 0 TCGA-R5-A805-01 PTPRT chr20 42258539 42248814 T G 1 0.402462252679414 1 DEL 1 Missense_Mutation 15 0.266666666666667 0 TCGA-KB-A6F7-01 ARID1A chr1 26738779 26731557 C T 1 0.953873066489864 1 DEL 0 Silent 225 0.457777777777778 0 TCGA-KB-A6F7-01 USH2A chr1 216334240 216325489 A T 1 0.719708606277717 1 DEL 1 Missense_Mutation 138 0.166666666666667 0 TCGA-KB-A6F7-01 SMAD4 chr18 51065679 51065530 G T 1 0.876060280459359 1 DEL 1 Missense_Mutation 118 0.347457627118644 0 TCGA-KB-A6F7-01 MUC16 chr19 8900018 8899990 A G 1 0.694242342890806 1 DEL 1 Missense_Mutation 31 0.387096774193548 0 TCGA-VQ-AA6G-01 PXDN chr2 1648544 1648229 G A 1 0.82449671899033 1 DEL 1 Missense_Mutation 188 0.340425531914894 0 TCGA-VQ-AA6G-01 LRP1B chr2 140494497 140487628 T C 0.8 0.488975954542858 0.983589303058408 DEL 1 Missense_Mutation 61 0.245901639344262 0 TCGA-VQ-AA6G-01 TTN chr2 178730022 178727641 C A 1 0.769442135510843 1 DEL 1 Missense_Mutation 141 0.326241134751773 0 TCGA-VQ-AA6G-01 TTN chr2 178747999 178739286 C A 0.94 0.506786503193102 1 DEL 1 Missense_Mutation 38 0.289473684210526 0 TCGA-VQ-AA6G-01 COL6A3 chr2 237389804 237381274 C T 0.93 0.72381706575878 1 DEL 1 Missense_Mutation 199 0.28643216080402 0 TCGA-VQ-AA6G-01 PCDH10 chr4 133159997 133151974 G A 0.95 0.550085425283126 1 DEL 1 Missense_Mutation 48 0.291666666666667 0 TCGA-VQ-AA6G-01 TG chr8 132914301 132906763 C A 0.76 0.441303395468974 0.980440908002143 DEL 1 Missense_Mutation 51 0.235294117647059 0 TCGA-VQ-AA6G-01 TENM4 chr11 78662418 78658383 C T 0.93 0.39467970518841 0.989126253628416 DEL 1 Missense_Mutation 21 0.285714285714286 0 TCGA-VQ-AA6G-01 LRRK2 chr12 40252475 40243647 A C 0.84 0.502102288892163 0.987504426048691 DEL 1 Missense_Mutation 54 0.259259259259259 0 TCGA-VQ-AA6G-01 LRRK2 chr12 40374622 40367674 T C 1 0.73030423923702 1 DEL 1 Missense_Mutation 48 0.416666666666667 0 TCGA-VQ-AA6G-01 TP53 chr17 7683260 7674872 T C 1 0.475645264551534 1 DEL 1 Missense_Mutation 15 0.466666666666667 0 TCGA-VQ-AA6G-01 MUC16 chr19 8962067 8952741 G T 0.97 0.648610720944613 1 DEL 1 Missense_Mutation 51 0.431372549019608 0 TCGA-BR-8677-01 TTN chr2 178727872 178722923 C T 1 0.28718645345972 0.988787641541812 DEL 1 Missense_Mutation 21 0.142857142857143 0 TCGA-BR-8677-01 MAP2 chr2 209701691 209696654 - GTATATTTAACAAAATACAAAA 0.5 0.17069433043462 0.960068293045315 DEL 0 Nonsense_Mutation 49 0.0612244897959184 1 TCGA-BR-8677-01 CSMD3 chr8 113175139 113173841 C T 0.76 0.330588155501817 0.982844122083562 DEL 1 Missense_Mutation 65 0.0923076923076923 0 TCGA-BR-8677-01 TG chr8 132888607 132888211 C A 0.92 0.342669869945905 0.987788953459563 DEL 1 Missense_Mutation 45 0.111111111111111 0 TCGA-BR-8677-01 GRM5 chr11 88855862 88850013 C A 0.63 0.26411149912809 0.972792552051527 DEL 0 Nonsense_Mutation 65 0.0769230769230769 1 TCGA-BR-8677-01 DYNC2H1 chr11 103163394 103156589 - CTGATTGTAACTTCA 1 0.271388368347265 0.987445492834348 DEL 1 Missense_Mutation 24 0.125 0 TCGA-BR-8677-01 CDH1 chr16 68813204 68811800 TGT - 1 0.527734072024892 1 DEL 1 Missense_Mutation 52 0.173076923076923 0 TCGA-BR-8677-01 PEG3 chr19 56818668 56816618 - TAAAAGGCGTCAG 0.73 0.224339996440021 0.980922388492671 DEL 0 Nonsense_Mutation 34 0.0882352941176471 1 TCGA-CG-4444-01 RYR2 chr1 237649584 237640968 T G 0.68 0.251810284206257 0.977940239658957 DEL 1 Missense_Mutation 37 0.108108108108108 0 TCGA-CG-4444-01 FMN2 chr1 240210752 240207657 C A 1 0.514439804750244 1 DEL 1 Missense_Mutation 68 0.161764705882353 0 TCGA-CG-4444-01 APOB chr2 21017538 21007578 T G 0.74 0.472484022839826 0.97480405485879 DEL 1 Missense_Mutation 212 0.089622641509434 0 TCGA-CG-4444-01 NCKAP5 chr2 132791795 132782715 T G 1 0.639212030213143 1 DEL 1 Missense_Mutation 72 0.180555555555556 0 TCGA-CG-4444-01 LRP1B chr2 140872467 140867806 C T 1 0.849291964267821 1 DEL 1 Missense_Mutation 59 0.457627118644068 0 TCGA-CG-4444-01 TTN chr2 178605410 178602058 G A 1 0.63468949247045 1 DEL 1 Missense_Mutation 109 0.174311926605505 0 TCGA-CG-4444-01 TTN chr2 178625614 178617856 C A 0.91 0.530817484890072 1 DEL 1 Missense_Mutation 103 0.145631067961165 0 TCGA-CG-4444-01 TTN chr2 178737222 178729396 A C 0.6 0.335803347970841 0.939224082721126 DEL 0 Nonsense_Mutation 115 0.0956521739130435 1 TCGA-CG-4444-01 ABCA12 chr2 214943825 214937530 A C 1 0.580319683250746 1 DEL 1 Missense_Mutation 82 0.158536585365854 0 TCGA-CG-4444-01 FAT4 chr4 125324731 125321447 G T 0.93 0.627608308106351 1 DEL 1 Missense_Mutation 189 0.148148148148148 0 TCGA-CG-4444-01 CTNND2 chr5 10973928 10973556 T G 1 0.626793023244911 1 DEL 1 Missense_Mutation 145 0.131034482758621 0 TCGA-CG-4444-01 PKHD1 chr6 51668649 51659439 A C 1 0.721928278387002 1 DEL 1 Missense_Mutation 71 0.23943661971831 0 TCGA-CG-4444-01 DST chr6 56530278 56526519 T G 0.97 0.678119883827478 1 DEL 1 Missense_Mutation 270 0.133333333333333 0 TCGA-CG-4444-01 RIMS1 chr6 71976249 71969029 A G 0.45 0.217486172628478 0.85115030521666 DEL 0 Nonsense_Mutation 98 0.0714285714285714 1 TCGA-CG-4444-01 COL12A1 chr6 75097009 75087601 G C 0.43 0.225930227036939 0.781052970519603 DEL 0 Nonsense_Mutation 152 0.0592105263157895 1 TCGA-CG-4444-01 TENM4 chr11 78710891 78701919 T G 1 0.882039686287639 1 DEL 1 Missense_Mutation 143 0.300699300699301 0 TCGA-CG-4444-01 FAT3 chr11 92807859 92800527 T G 1 0.622530374210885 1 DEL 1 Missense_Mutation 39 0.256410256410256 0 TCGA-CG-4444-01 TP53 chr17 7684397 7675077 G A 1 0.879695644432007 1 DEL 0 Silent 49 0.63265306122449 0 TCGA-CG-4444-01 MUC16 chr19 8936828 8936299 A C 1 0.811821713911181 1 DEL 1 Missense_Mutation 86 0.290697674418605 0 TCGA-HU-8243-01 CNTNAP5 chr2 124648515 124647873 G C 0.87 0.300591174001504 0.986125727423832 DEL 1 Missense_Mutation 23 0.173913043478261 0 TCGA-HU-8243-01 DCHS2 chr4 154245064 154235080 T A 1 0.648018571392109 1 DEL 1 Missense_Mutation 64 0.28125 0 TCGA-HU-8243-01 ADGRV1 chr5 90651606 90645978 AAGA - 0.87 0.34189887299214 0.986908720673425 DEL 1 Missense_Mutation 23 0.217391304347826 0 TCGA-HU-8243-01 APC chr5 112848794 112843744 G C 1 0.742075794476666 1 DEL 1 Missense_Mutation 98 0.295918367346939 0 TCGA-HU-8243-01 SDK1 chr7 3972043 3967416 G A 1 0.819308087471021 1 DEL 1 Missense_Mutation 89 0.337078651685393 0 TCGA-HU-8243-01 GLI3 chr7 41970949 41964463 C T 1 0.697700324695583 1 DEL 1 Missense_Mutation 46 0.326086956521739 0 TCGA-HU-8243-01 SLITRK5 chr13 87678490 87676932 A G 0.51 0.258123082521282 0.892787549911739 DEL 0 Nonsense_Mutation 79 0.10126582278481 1 TCGA-HU-8243-01 TP53 chr17 7682990 7674220 C T 1 0.844002299956774 1 DEL 1 Missense_Mutation 44 0.568181818181818 0 TCGA-HU-8243-01 SMAD4 chr18 51074801 51065518 G T 1 0.842315244885357 1 DEL 1 Missense_Mutation 81 0.419753086419753 0 TCGA-HU-8243-01 ZNF208 chr19 21975653 21974757 C T 0.54 0.246710080714269 0.939971213238533 DEL 0 Nonsense_Mutation 56 0.107142857142857 1 TCGA-BR-7901-01 ERBB4 chr2 211390178 211387029 A C 0.44 0.202368676044649 0.867059473754059 DEL 0 Nonsense_Mutation 86 0.0697674418604651 1 TCGA-BR-7901-01 SYNE1 chr6 152223610 152221551 T G 0.87 0.475585614971443 0.988821977749519 DEL 1 Missense_Mutation 101 0.118811881188119 0 TCGA-BR-7901-01 GLI3 chr7 41970334 41964760 T G 0.76 0.41627150873206 0.982309690231327 DEL 0 Nonsense_Mutation 134 0.082089552238806 1 TCGA-BR-7901-01 PREX2 chr8 68028867 68019664 T C 1 0.402586868329153 1 DEL 1 Missense_Mutation 37 0.162162162162162 0 TCGA-BR-7901-01 TRPS1 chr8 115608291 115604987 T G 0.98 0.56563755969825 1 DEL 1 Missense_Mutation 119 0.134453781512605 0 TCGA-BR-7901-01 DYNC2H1 chr11 103284905 103282228 C T 0.66 0.274938803402971 0.975996477367048 DEL 0 Nonsense_Mutation 55 0.0909090909090909 1 TCGA-BR-7901-01 NAV3 chr12 78214761 78210464 A G 0.46 0.158177437447942 0.94753019168064 DEL 0 Nonsense_Mutation 41 0.0731707317073171 1 TCGA-BR-7901-01 TMEM132D chr12 129339931 129337672 T A 0.61 0.383873470171958 0.903641528218582 DEL 0 Nonsense_Mutation 217 0.0829493087557604 1 TCGA-BR-7901-01 DNAH9 chr17 11785243 11781069 A G 0.79 0.280080030390613 0.983646898780756 DEL 1 Missense_Mutation 32 0.125 0 TCGA-FP-8099-01 TTN chr2 178612365 178607593 G A 0.97 0.689395200103125 1 DEL 1 Missense_Mutation 222 0.171171171171171 0 TCGA-FP-8099-01 TTN chr2 178646323 178636577 G T 1 0.615431339730825 1 DEL 1 Missense_Mutation 73 0.205479452054795 0 TCGA-FP-8099-01 PIK3CA chr3 179203319 179199887 - A 0.42 0.143817767022128 0.928839085807187 DEL 0 Nonsense_Mutation 48 0.0625 1 TCGA-FP-8099-01 SYNE1 chr6 152242425 152242365 G A 0.91 0.583394346375676 1 DEL 1 Missense_Mutation 108 0.194444444444444 0 TCGA-FP-8099-01 RELN chr7 103594924 103593737 C A 0.35 0.151753080204153 0.775743891807889 DEL 0 Nonsense_Mutation 94 0.0531914893617021 1 TCGA-FP-8099-01 TG chr8 132873866 132869815 G A 1 0.697039473947909 1 DEL 1 Missense_Mutation 118 0.161016949152542 0 TCGA-FP-8099-01 TP53 chr17 7681520 7675088 C T 1 0.880705326826395 1 DEL 1 Missense_Mutation 68 0.529411764705882 0 TCGA-D7-8572-01 FLG chr1 152306808 152302788 T C 1 0.627320069437104 1 DEL 1 Missense_Mutation 97 0.206185567010309 0 TCGA-D7-8572-01 FAT4 chr4 125451394 125448553 T A 0.32 0.143929856577547 0.650025629050194 DEL 0 Nonsense_Mutation 95 0.0631578947368421 1 TCGA-D7-8572-01 DST chr6 56517511 56517202 A T 0.73 0.467260284816362 0.968803216396205 DEL 0 Nonsense_Mutation 131 0.145038167938931 1 TCGA-D7-8572-01 ADGRB3 chr6 68643029 68639048 A G 1 0.697198057317768 1 DEL 1 Missense_Mutation 59 0.288135593220339 0 TCGA-D7-8572-01 RIMS1 chr6 71976473 71969029 A G 1 0.673378042176144 1 DEL 1 Missense_Mutation 144 0.201388888888889 0 TCGA-D7-8572-01 CSMD3 chr8 112308759 112306027 T A 1 0.764348884197473 1 DEL 1 Missense_Mutation 201 0.218905472636816 0 TCGA-D7-8572-01 CSMD3 chr8 112344103 112336730 C A 0.79 0.530348039528099 0.98152407784352 DEL 1 Missense_Mutation 145 0.158620689655172 0 TCGA-D7-8572-01 FAT3 chr11 92362155 92354683 C A 1 0.720682099298415 1 DEL 1 Missense_Mutation 65 0.292307692307692 0 TCGA-D7-8572-01 DNAH3 chr16 21099198 21097409 G A 1 0.697861334743152 1 DEL 1 Missense_Mutation 155 0.206451612903226 0 TCGA-D7-8572-01 CDH1 chr16 68817273 68813379 G C 0.36 0.215566530065262 0.588663385136558 DEL 0 Nonsense_Mutation 192 0.0729166666666667 1 TCGA-D7-8572-01 DNAH17 chr17 78570013 78567011 G C 1 0.424930274781158 1 DEL 1 Missense_Mutation 27 0.222222222222222 0 TCGA-D7-8572-01 DCC chr18 53209266 53207688 G T 0.8 0.490165485287661 0.98426628199997 DEL 1 Missense_Mutation 100 0.16 0 TCGA-VQ-A94O-01 LRP1B chr2 140514014 140506918 G T 1 0.88677565874667 1 DEL 1 Missense_Mutation 60 0.583333333333333 0 TCGA-VQ-A94O-01 ABCA12 chr2 214984888 214975944 C T 1 0.523954257210273 1 DEL 1 Missense_Mutation 58 0.189655172413793 0 TCGA-VQ-A94O-01 MUC17 chr7 101034943 101033627 G T 1 0.974371326952948 1 DEL 1 Missense_Mutation 383 0.490861618798956 0 TCGA-VQ-A94O-01 CDH23 chr10 71807816 71799167 A G 1 0.538313140856747 1 DEL 1 Missense_Mutation 46 0.239130434782609 0 TCGA-VQ-A8PS-01 SLITRK5 chr13 87685079 87678200 A T 1 0.944426058108061 1 DEL 1 Missense_Mutation 264 0.318181818181818 0 TCGA-BR-7957-01 RYR2 chr1 237740227 237732146 A T 0.86 0.247272229602048 0.984831868132861 DEL 1 Missense_Mutation 34 0.0882352941176471 0 TCGA-BR-7957-01 DST chr6 56674946 56670776 T C 1 0.493756272487195 1 DEL 1 Missense_Mutation 16 0.3125 0 TCGA-HU-A4GP-01 COL11A1 chr1 103015049 103012448 C A 0.43 0.147450479953585 0.935038343917109 DEL 0 Nonsense_Mutation 49 0.0612244897959184 1 TCGA-HU-A4GP-01 OBSCN chr1 228250828 228244451 G T 0.76 0.444097467645178 0.980979859428601 DEL 1 Missense_Mutation 85 0.152941176470588 0 TCGA-HU-A4GP-01 XIRP2 chr2 167252578 167247553 A C 1 0.646806240794875 1 DEL 1 Missense_Mutation 44 0.272727272727273 0 TCGA-HU-A4GP-01 COL6A3 chr2 237384465 237378797 C A 0.7 0.31392934308988 0.978686585947639 DEL 1 Missense_Mutation 51 0.117647058823529 0 TCGA-HU-A4GP-01 COL12A1 chr6 75098469 75089121 G T 1 0.610430553521878 1 DEL 1 Missense_Mutation 36 0.277777777777778 0 TCGA-HU-A4GP-01 UTRN chr6 144812739 144803095 G A 1 0.452258365667557 1 DEL 1 Missense_Mutation 48 0.166666666666667 0 TCGA-HU-A4GP-01 SDK1 chr7 3978440 3969332 C T 1 0.921605195421883 1 DEL 1 Missense_Mutation 262 0.282442748091603 0 TCGA-HU-A4GP-01 GLI3 chr7 41972122 41967907 G C 0.81 0.463367462218899 0.985776108004582 DEL 1 Missense_Mutation 112 0.116071428571429 0 TCGA-HU-A4GP-01 GLI3 chr7 41969920 41967908 G T 0.76 0.426220448093418 0.980926758769507 DEL 1 Missense_Mutation 111 0.108108108108108 0 TCGA-HU-A4GP-01 PCLO chr7 83139993 83135384 C A 0.84 0.382034426265754 0.986814222451831 DEL 1 Missense_Mutation 58 0.120689655172414 0 TCGA-HU-A4GP-01 PCLO chr7 83163438 83154881 G C 0.49 0.323404790522294 0.723231776600989 DEL 0 Nonsense_Mutation 313 0.0702875399361022 1 TCGA-HU-A4GP-01 ZFHX4 chr8 76861346 76853983 T A 1 0.891260825331883 1 DEL 1 Missense_Mutation 214 0.233644859813084 0 TCGA-HU-A4GP-01 RIMS2 chr8 103888989 103885824 T C 1 0.851514288235816 1 DEL 1 Missense_Mutation 122 0.262295081967213 0 TCGA-HU-A4GP-01 TG chr8 132922944 132913079 C T 1 0.892428560353078 1 DEL 0 Silent 64 0.546875 0 TCGA-HU-A4GP-01 TG chr8 133031740 133029916 C T 1 0.782518751379897 1 DEL 1 Missense_Mutation 77 0.25974025974026 0 TCGA-HU-A4GP-01 TP53 chr17 7676330 7673764 C T 1 0.746033706572523 1 DEL 1 Missense_Mutation 26 0.538461538461538 0 TCGA-HU-A4GP-01 PEG3 chr19 56818959 56815478 C A 1 0.789063674790533 1 DEL 1 Missense_Mutation 122 0.213114754098361 0 TCGA-HU-A4GP-01 PTPRT chr20 42479787 42472556 A C 1 0.869985050868301 1 DEL 0 Silent 44 0.636363636363636 0 TCGA-BR-A4CQ-01 SPTA1 chr1 158664918 158657489 T G 1 0.971339320709188 1 DEL 0 Silent 177 0.80225988700565 0 TCGA-BR-A4CQ-01 USH2A chr1 216292541 216289374 C T 0.89 0.607204885935499 1 DEL 1 Missense_Mutation 122 0.213114754098361 0 TCGA-BR-A4CQ-01 NCKAP5 chr2 132791889 132782450 G T 1 0.616445434657083 1 DEL 1 Missense_Mutation 73 0.246575342465753 0 TCGA-BR-A4CQ-01 TTN chr2 178575346 178568225 G T 1 0.73255576066383 1 DEL 1 Missense_Mutation 205 0.2 0 TCGA-BR-A4CQ-01 TTN chr2 178597308 178587331 C T 1 0.844979126663017 1 DEL 1 Missense_Mutation 50 0.52 0 TCGA-BR-A4CQ-01 DNAH7 chr2 195869380 195864727 G T 1 0.903110873832339 1 DEL 1 Missense_Mutation 211 0.317535545023697 0 TCGA-BR-A4CQ-01 FAT4 chr4 125323317 125321219 C A 0.85 0.633564773130863 0.987151474365008 DEL 1 Missense_Mutation 142 0.267605633802817 0 TCGA-BR-A4CQ-01 CTNND2 chr5 11389832 11384844 G A 0.89 0.502617939219417 0.989957311686831 DEL 1 Missense_Mutation 43 0.27906976744186 0 TCGA-BR-A4CQ-01 SYNE1 chr6 152372180 152369097 G A 0.67 0.362090347390646 0.967091448000069 DEL 0 Nonsense_Mutation 78 0.128205128205128 1 TCGA-BR-A4CQ-01 SYNE1 chr6 152397484 152396944 G T 0.33 0.170620650466428 0.594199878741383 DEL 0 Nonsense_Mutation 143 0.0629370629370629 1 TCGA-BR-A4CQ-01 TG chr8 133018900 133017968 G T 1 0.687206026361925 1 DEL 1 Missense_Mutation 64 0.296875 0 TCGA-BR-A4CQ-01 TP53 chr17 7684802 7675085 C A 1 0.9196043124353 1 DEL 1 Missense_Mutation 83 0.662650602409639 0 TCGA-BR-A4CQ-01 DCC chr18 53471224 53467973 G T 0.72 0.490148329133039 0.956026813843267 DEL 0 Nonsense_Mutation 102 0.225490196078431 1 TCGA-BR-A4CQ-01 MUC16 chr19 8903070 8900318 C T 0.66 0.488519230748908 0.848568220256089 DEL 0 Nonsense_Mutation 195 0.205128205128205 1 TCGA-BR-A4CQ-01 MUC16 chr19 8966321 8962377 G A 0.92 0.501926268032713 1 DEL 1 Missense_Mutation 38 0.289473684210526 0 TCGA-BR-A4CQ-01 MUC16 chr19 8975179 8966284 C G 0.99 0.670632528424495 1 DEL 1 Missense_Mutation 87 0.310344827586207 0 TCGA-D7-5579-01 HMCN1 chr1 186075225 186069765 T C 1 0.6641048819862 1 DEL 1 Missense_Mutation 32 0.3125 0 TCGA-D7-5579-01 USH2A chr1 215968356 215965364 A T 1 0.882540040561776 1 DEL 1 Missense_Mutation 264 0.196969696969697 0 TCGA-D7-5579-01 XIRP2 chr2 167258820 167251730 A C 0.98 0.484959234123645 1 DEL 1 Missense_Mutation 74 0.135135135135135 0 TCGA-D7-5579-01 TTN chr2 178671780 178670259 T G 1 0.28542947173345 0.988611628442639 DEL 1 Missense_Mutation 19 0.157894736842105 0 TCGA-D7-5579-01 TTN chr2 178781502 178780017 T G 0.84 0.54293656189285 0.987789314632661 DEL 1 Missense_Mutation 181 0.116022099447514 0 TCGA-D7-5579-01 DCHS2 chr4 154240409 154235825 G T 1 0.827194106836716 1 DEL 1 Missense_Mutation 174 0.201149425287356 0 TCGA-D7-5579-01 SYNE1 chr6 152462479 152455971 T A 1 0.841366221311837 1 DEL 1 Missense_Mutation 204 0.186274509803922 0 TCGA-D7-5579-01 MUC17 chr7 101045989 101041354 C A 0.96 0.711833215420122 1 DEL 1 Missense_Mutation 440 0.115909090909091 0 TCGA-D7-5579-01 CSMD1 chr8 3400845 3399443 C T 0.53 0.269886012503551 0.924803737664864 DEL 0 Nonsense_Mutation 139 0.0575539568345324 1 TCGA-D7-5579-01 LRRK2 chr12 40359886 40351726 C T 0.92 0.375035210394543 0.988473967160812 DEL 1 Missense_Mutation 54 0.111111111111111 0 TCGA-BR-4255-01 ADGRV1 chr5 90787966 90778589 C T 1 0.592745713531834 1 DEL 1 Missense_Mutation 47 0.319148936170213 0 TCGA-BR-4255-01 TP53 chr17 7679695 7674890 T C 0.82 0.490758520969375 0.985746707693927 DEL 0 Nonsense_Mutation 55 0.254545454545455 1 TCGA-R5-A804-01 ARID1A chr1 26767205 26763103 T G 1 0.811846448443166 1 DEL 1 Missense_Mutation 64 0.375 0 TCGA-R5-A804-01 FLG chr1 152316614 152314358 G T 0.84 0.40389391363695 0.986837829581261 DEL 1 Missense_Mutation 54 0.148148148148148 0 TCGA-R5-A804-01 PXDN chr2 1676120 1666396 G A 1 0.432192769647177 1 DEL 1 Missense_Mutation 39 0.179487179487179 0 TCGA-R5-A804-01 PKHD1 chr6 52052147 52050193 G T 0.69 0.309911827763142 0.977421176760379 DEL 0 Nonsense_Mutation 49 0.122448979591837 1 TCGA-R5-A804-01 SACS chr13 23339278 23338247 G A 0.44 0.239996289972202 0.77192268010835 DEL 0 Nonsense_Mutation 128 0.078125 1 TCGA-R5-A804-01 CDH1 chr16 68818681 68812147 T G 1 0.75497188440914 1 DEL 1 Missense_Mutation 66 0.303030303030303 0 TCGA-IN-A6RI-01 TTN chr2 178537050 178533816 T C 1 0.588908139207188 1 DEL 1 Missense_Mutation 45 0.288888888888889 0 TCGA-IN-A6RI-01 TTN chr2 178792074 178785685 G A 1 0.869601962604568 1 DEL 1 Missense_Mutation 66 0.53030303030303 0 TCGA-IN-A6RI-01 RIMS2 chr8 104256128 104251722 C T 0.38 0.234284865491311 0.602966235280683 DEL 0 Nonsense_Mutation 245 0.0653061224489796 1 TCGA-IN-A6RI-01 CDH23 chr10 71726558 71725488 C T 0.84 0.359394996670916 0.986225167132283 DEL 1 Missense_Mutation 35 0.171428571428571 0 TCGA-IN-A6RI-01 TENM4 chr11 78673801 78672065 C G 1 0.768259311474719 1 DEL 1 Missense_Mutation 48 0.375 0 TCGA-IN-A6RI-01 NAV3 chr12 78127523 78118091 A G 1 0.93503095053394 1 DEL 1 Missense_Mutation 222 0.369369369369369 0 TCGA-IN-A6RI-01 NALCN chr13 101087990 101082825 A G 1 0.95049351579508 1 DEL 1 Missense_Mutation 119 0.672268907563025 0 TCGA-IN-A6RI-01 TP53 chr17 7683620 7675088 C T 1 0.870737080813538 1 DEL 1 Missense_Mutation 48 0.645833333333333 0 TCGA-IN-A6RI-01 KIF2B chr17 53833003 53823544 C T 1 0.864314234024745 1 DEL 1 Missense_Mutation 119 0.327731092436975 0 TCGA-BR-8077-01 NEB chr2 151630287 151627190 C G 1 0.878515378784125 1 DEL 0 Silent 43 0.697674418604651 0 TCGA-BR-8077-01 LRP2 chr2 169217288 169216348 T C 1 0.800733986828843 1 DEL 1 Missense_Mutation 46 0.434782608695652 0 TCGA-BR-8077-01 DNAH7 chr2 195870161 195864618 C G 0.59 0.286243128624996 0.956781182279987 DEL 0 Nonsense_Mutation 71 0.0985915492957746 1 TCGA-BR-8077-01 ADGRV1 chr5 90738035 90728676 G A 1 0.850682443299009 1 DEL 1 Missense_Mutation 101 0.316831683168317 0 TCGA-BR-8077-01 TP53 chr17 7675469 7673776 G A 1 0.847209562786022 1 DEL 0 Silent 34 0.676470588235294 0 TCGA-BR-8077-01 PEG3 chr19 56822174 56814904 C T 1 0.894899199390587 1 DEL 0 Silent 68 0.558823529411765 0 TCGA-BR-A452-01 TTN chr2 178594387 178585204 C G 1 0.813233948909526 1 DEL 1 Missense_Mutation 214 0.224299065420561 0 TCGA-BR-A452-01 TTN chr2 178777662 178767853 T G 1 0.727382243819324 1 DEL 1 Missense_Mutation 68 0.279411764705882 0 TCGA-BR-A452-01 SYNE1 chr6 152488614 152483098 A C 1 0.93410295371524 1 DEL 1 Missense_Mutation 261 0.344827586206897 0 TCGA-BR-A452-01 PCLO chr7 82917819 82915378 A C 1 0.621197971008255 1 DEL 1 Missense_Mutation 39 0.282051282051282 0 TCGA-BR-A452-01 CSMD3 chr8 113103806 113098895 C G 1 0.770784442115993 1 DEL 1 Missense_Mutation 66 0.303030303030303 0 TCGA-BR-A452-01 FAT3 chr11 92363015 92353811 C T 1 0.650123335482945 1 DEL 1 Missense_Mutation 55 0.254545454545455 0 TCGA-BR-A452-01 DNAH3 chr16 20993941 20987437 - T 1 0.868485881933546 1 DEL 1 Missense_Mutation 66 0.46969696969697 0 TCGA-BR-A452-01 TP53 chr17 7679037 7675085 C A 1 0.891102532336573 1 DEL 1 Missense_Mutation 74 0.540540540540541 0 TCGA-VQ-AA6F-01 ARID1A chr1 26773231 26766291 ATGGGAACTGGACCTCCTTATGGACAAGGGATTA - 1 0.593245127185087 1 DEL 1 Missense_Mutation 84 0.202380952380952 0 TCGA-BR-8296-01 PCDH10 chr4 133161753 133152223 G C 1 0.538930496920922 1 DEL 1 Missense_Mutation 55 0.163636363636364 0 TCGA-BR-8296-01 CTNND2 chr5 11371890 11364837 G A 1 0.541316967452852 1 DEL 1 Missense_Mutation 82 0.121951219512195 0 TCGA-BR-8296-01 COL12A1 chr6 75157020 75152355 CA - 0.49 0.189920105540219 0.946212262574646 DEL 0 Nonsense_Mutation 75 0.0533333333333333 1 TCGA-BR-8296-01 PREX2 chr8 68101092 68097112 G A 0.82 0.413325924162376 0.986420276118973 DEL 1 Missense_Mutation 89 0.101123595505618 0 TCGA-BR-8296-01 TP53 chr17 7676311 7674250 C A 0.65 0.270457652821196 0.974506907106507 DEL 1 Missense_Mutation 55 0.0909090909090909 0 TCGA-CG-5732-01 FLG chr1 152315568 152307600 C T 1 0.967289314609476 1 DEL 0 Silent 588 0.272108843537415 0 TCGA-CG-5732-01 FLG chr1 152315501 152308687 G T 0.89 0.680965457923777 1 DEL 1 Missense_Mutation 643 0.088646967340591 0 TCGA-CG-5732-01 LRP1B chr2 140531562 140526323 C T 1 0.684613173246267 1 DEL 1 Missense_Mutation 94 0.170212765957447 0 TCGA-CG-5732-01 TRPS1 chr8 115415778 115414746 A C 0.61 0.378786401272125 0.914821857737883 DEL 0 Nonsense_Mutation 281 0.0604982206405694 1 TCGA-CG-5732-01 TP53 chr17 7677610 7674277 AC - 1 0.826953478411017 1 DEL 0 Silent 44 0.477272727272727 0 TCGA-CG-4474-01 FLG chr1 152320682 152314341 T G 0.92 0.660439265289681 1 DEL 1 Missense_Mutation 152 0.230263157894737 0 TCGA-CG-4474-01 TTN chr2 178743969 178739941 T G 0.82 0.59283316232205 0.982457521835995 DEL 0 Nonsense_Mutation 166 0.204819277108434 1 TCGA-CG-4474-01 PIK3CA chr3 179221052 179218294 G A 0.88 0.504116471036012 0.989615483653619 DEL 1 Missense_Mutation 59 0.220338983050847 0 TCGA-CG-4474-01 CDH1 chr16 68814792 68808724 T A 1 0.716537435235906 1 DEL 1 Missense_Mutation 60 0.333333333333333 0 TCGA-BR-7958-01 FLG2 chr1 152359808 152350952 T G 0.95 0.709736222269138 1 DEL 1 Missense_Mutation 280 0.178571428571429 0 TCGA-BR-7958-01 LRP1B chr2 140784555 140776209 A C 0.73 0.26741751039198 0.981100451152536 DEL 1 Missense_Mutation 29 0.137931034482759 0 TCGA-BR-7958-01 LRP1B chr2 140844669 140841014 G A 0.91 0.483175542862849 1 DEL 1 Missense_Mutation 64 0.171875 0 TCGA-BR-7958-01 TTN chr2 178572710 178568946 T G 0.7 0.457380732297231 0.9591478011363 DEL 0 Nonsense_Mutation 151 0.132450331125828 1 TCGA-BR-7958-01 TTN chr2 178579393 178572421 T G 0.94 0.438876363148414 1 DEL 1 Missense_Mutation 45 0.177777777777778 0 TCGA-BR-7958-01 TTN chr2 178593841 178592858 T G 0.84 0.566391563864516 0.9870854827504 DEL 1 Missense_Mutation 158 0.158227848101266 0 TCGA-BR-7958-01 ERBB4 chr2 211625098 211623995 A C 1 0.621210325079068 1 DEL 1 Missense_Mutation 60 0.233333333333333 0 TCGA-BR-7958-01 UTRN chr6 144801378 144793836 C T 1 0.828697073536413 1 DEL 1 Missense_Mutation 93 0.333333333333333 0 TCGA-BR-7958-01 PLXNA4 chr7 132511013 132508030 A C 1 0.89817493959336 1 DEL 1 Missense_Mutation 145 0.344827586206897 0 TCGA-BR-7958-01 CSMD1 chr8 2951301 2950311 G T 1 0.620184174887052 1 DEL 1 Missense_Mutation 68 0.25 0 TCGA-BR-7958-01 CSMD3 chr8 112645314 112638743 A C 0.67 0.277877851749785 0.976402374409645 DEL 1 Missense_Mutation 47 0.106382978723404 0 TCGA-BR-7958-01 CDH23 chr10 71808727 71799531 C G 1 0.712059225235232 1 DEL 1 Missense_Mutation 185 0.194594594594595 0 TCGA-BR-7958-01 AHNAK2 chr14 104954662 104947922 G A 1 0.878990653957382 1 DEL 1 Missense_Mutation 383 0.232375979112272 0 TCGA-BR-7958-01 SMAD4 chr18 51066200 51065570 C G 1 0.65164974393236 1 DEL 1 Missense_Mutation 53 0.264150943396226 0 TCGA-BR-7958-01 MUC16 chr19 8944186 8937719 G A 1 0.713740186246003 1 DEL 1 Missense_Mutation 104 0.230769230769231 0 TCGA-VQ-A91S-01 LRP1B chr2 141480766 141480528 C T 0.98 0.580058423845514 1 DEL 1 Missense_Mutation 65 0.246153846153846 0 TCGA-VQ-A91S-01 XIRP2 chr2 167248903 167245595 A T 1 0.801972944623112 1 DEL 1 Missense_Mutation 52 0.423076923076923 0 TCGA-VQ-A91S-01 SCN10A chr3 38733422 38723513 T C 1 0.448870565657155 1 DEL 1 Missense_Mutation 13 0.384615384615385 0 TCGA-VQ-A91S-01 DCHS2 chr4 154238925 154235092 A C 1 0.445993954990506 1 DEL 1 Missense_Mutation 27 0.259259259259259 0 TCGA-VQ-A91S-01 DNAH5 chr5 13885618 13876712 A C 0.63 0.28942802807885 0.967944806876278 DEL 0 Nonsense_Mutation 38 0.157894736842105 1 TCGA-VQ-A91S-01 GLI3 chr7 42025864 42023496 T C 0.92 0.508617534869715 1 DEL 1 Missense_Mutation 52 0.230769230769231 0 TCGA-VQ-A91S-01 ABCA13 chr7 48520791 48520246 T G 1 0.597271566360809 1 DEL 1 Missense_Mutation 45 0.288888888888889 0 TCGA-VQ-A91S-01 PLXNA4 chr7 132189140 132185377 T A 1 0.90275190201076 1 DEL 1 Missense_Mutation 87 0.517241379310345 0 TCGA-VQ-A91S-01 PREX2 chr8 68022080 68017852 T A 1 0.728218634422019 1 DEL 1 Missense_Mutation 28 0.464285714285714 0 TCGA-VQ-A91S-01 ZFHX4 chr8 76712776 76704526 A C 1 0.557888821873313 1 DEL 1 Missense_Mutation 56 0.196428571428571 0 TCGA-VQ-A91S-01 CSMD3 chr8 112592658 112587077 C T 1 0.815524172437712 1 DEL 1 Missense_Mutation 56 0.392857142857143 0 TCGA-VQ-A91S-01 GRM5 chr11 89055216 89047743 G T 0.85 0.410671558563813 0.987411739185943 DEL 1 Missense_Mutation 47 0.170212765957447 0 TCGA-VQ-A91S-01 ABCC9 chr12 21825467 21817274 A C 1 0.697980094267346 1 DEL 1 Missense_Mutation 95 0.273684210526316 0 TCGA-VQ-A91S-01 LRRK2 chr12 40324140 40320061 T G 1 0.607093505743951 1 DEL 1 Missense_Mutation 66 0.257575757575758 0 TCGA-VQ-A91S-01 NAV3 chr12 78189047 78188615 G T 0.9 0.510748840112269 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-VQ-A91S-01 TP53 chr17 7675274 7673826 A G 1 0.788024176652141 1 DEL 0 Silent 23 0.695652173913043 0 TCGA-VQ-A91S-01 KIF2B chr17 53825276 53823934 CCATCTTCCGCAAGGGCATGGCCACCTGCTTTG - 0.33 0.130805558085707 0.769406704562256 DEL 0 Nonsense_Mutation 48 0.0833333333333333 1 TCGA-VQ-A91S-01 LAMA1 chr18 6988386 6985349 G T 0.26 0.141620842412446 0.465791814070415 DEL 0 Nonsense_Mutation 151 0.0662251655629139 1 TCGA-VQ-A91S-01 MUC16 chr19 8967135 8961148 T G 1 0.788652722459008 1 DEL 1 Missense_Mutation 141 0.25531914893617 0 TCGA-VQ-A91S-01 PEG3 chr19 56821346 56814227 T G 0.92 0.491721647677794 1 DEL 1 Missense_Mutation 48 0.229166666666667 0 TCGA-D7-A74B-01 TP53 chr17 7685547 7676082 GGGACAG - 0.67 0.394117070206065 0.963857250990989 DEL 0 Nonsense_Mutation 120 0.108333333333333 1 TCGA-BR-8687-01 LRP2 chr2 169285266 169279525 T G 1 0.900767799725444 1 DEL 1 Missense_Mutation 72 0.597222222222222 0 TCGA-BR-8687-01 DNAH7 chr2 195978521 195970041 T G 0.48 0.234226267561399 0.876476065316196 DEL 0 Nonsense_Mutation 60 0.116666666666667 1 TCGA-BR-8687-01 PKHD1 chr6 52033628 52026011 C T 0.88 0.490722649333164 0.989425671048964 DEL 1 Missense_Mutation 56 0.214285714285714 0 TCGA-BR-8687-01 FAM135B chr8 138139447 138132736 T C 0.45 0.317900950154396 0.617557282041518 DEL 0 Nonsense_Mutation 363 0.0881542699724518 1 TCGA-BR-8687-01 PCDH15 chr10 54154627 54153109 G T 0.63 0.346617685565388 0.954653754893311 DEL 0 Nonsense_Mutation 65 0.153846153846154 1 TCGA-BR-8687-01 DYNC2H1 chr11 103113776 103113683 A C 0.74 0.351544446835034 0.980544141316847 DEL 0 Silent 39 0.179487179487179 0 TCGA-BR-8687-01 NBEA chr13 35558709 35550992 C T 0.64 0.328208471395773 0.965301343092377 DEL 0 Nonsense_Mutation 51 0.156862745098039 1 TCGA-BR-8687-01 KIF2B chr17 53824727 53823470 A T 0.31 0.150630673521858 0.607017123182725 DEL 0 Nonsense_Mutation 92 0.0760869565217391 1 TCGA-BR-8289-01 HMCN1 chr1 186003410 185997510 C A 1 0.742213813509266 1 DEL 1 Missense_Mutation 100 0.2 0 TCGA-BR-8289-01 PXDN chr2 1649071 1648892 T C 1 0.874073902451081 1 DEL 0 Silent 30 0.9 0 TCGA-BR-8289-01 NCKAP5 chr2 132789198 132782715 T G 1 0.734067026006128 1 DEL 1 Missense_Mutation 84 0.214285714285714 0 TCGA-BR-8289-01 TTN chr2 178573451 178564107 G T 1 0.852460228286148 1 DEL 1 Missense_Mutation 177 0.231638418079096 0 TCGA-BR-8289-01 ADGRV1 chr5 90691445 90683872 A C 1 0.401644592727889 1 DEL 1 Missense_Mutation 14 0.285714285714286 0 TCGA-BR-8289-01 COL12A1 chr6 75128143 75124004 A C 1 0.437477182946522 1 DEL 1 Missense_Mutation 55 0.127272727272727 0 TCGA-BR-8289-01 SYNE1 chr6 152337819 152330566 C A 1 0.773873390447959 1 DEL 1 Missense_Mutation 69 0.27536231884058 0 TCGA-BR-8289-01 ABCA13 chr7 48401746 48392112 A C 1 0.821148477460782 1 DEL 1 Missense_Mutation 56 0.428571428571429 0 TCGA-BR-8289-01 RELN chr7 103706464 103698002 T A 1 0.921213713360569 1 DEL 1 Missense_Mutation 151 0.384105960264901 0 TCGA-BR-8289-01 CSMD1 chr8 3110740 3108653 T G 1 0.547273072614902 1 DEL 1 Missense_Mutation 23 0.304347826086957 0 TCGA-BR-8289-01 PREX2 chr8 68091016 68090603 T G 0.73 0.341305026653451 0.980238701517157 DEL 1 Missense_Mutation 71 0.0985915492957746 0 TCGA-BR-8289-01 CDH23 chr10 71705815 71702184 C A 1 0.860939510767634 1 DEL 1 Missense_Mutation 206 0.223300970873786 0 TCGA-BR-8289-01 TENM4 chr11 78670545 78670388 G A 1 0.548894465164194 1 DEL 1 Missense_Mutation 42 0.214285714285714 0 TCGA-BR-8289-01 TMEM132D chr12 129085959 129084579 G A 1 0.813290183932164 1 DEL 1 Missense_Mutation 60 0.366666666666667 0 TCGA-BR-8289-01 AHNAK2 chr14 104954423 104948391 G T 1 0.956609942502983 1 DEL 1 Missense_Mutation 416 0.307692307692308 0 TCGA-BR-8289-01 MUC16 chr19 8959517 8951313 A C 1 0.930486387731572 1 DEL 1 Missense_Mutation 288 0.298611111111111 0 TCGA-BR-8289-01 PEG3 chr19 56826148 56821715 T G 0.96 0.633746037638646 1 DEL 1 Missense_Mutation 172 0.151162790697674 0 TCGA-SW-A7EB-01 HMCN1 chr1 186121445 186114925 C T 1 0.815441039071903 1 DEL 1 Missense_Mutation 150 0.2 0 TCGA-SW-A7EB-01 TTN chr2 178785138 178777770 G T 1 0.51892100240248 1 DEL 1 Missense_Mutation 94 0.117021276595745 0 TCGA-SW-A7EB-01 COL6A3 chr2 237375708 237366796 G C 1 0.51892100240248 1 DEL 1 Missense_Mutation 94 0.117021276595745 0 TCGA-SW-A7EB-01 SYNE1 chr6 152245930 152242347 G C 0.87 0.428018793112691 0.988214640446298 DEL 1 Missense_Mutation 93 0.0967741935483871 0 TCGA-SW-A7EB-01 DNAH11 chr7 21904284 21899374 C G 1 0.618669222712546 1 DEL 1 Missense_Mutation 148 0.121621621621622 0 TCGA-SW-A7EB-01 GRM5 chr11 89057267 89047278 C A 1 0.676034999855558 1 DEL 1 Missense_Mutation 62 0.209677419354839 0 TCGA-SW-A7EB-01 DCLK1 chr13 35949135 35947398 C A 1 0.591551740246502 1 DEL 1 Missense_Mutation 57 0.175438596491228 0 TCGA-SW-A7EB-01 TP53 chr17 7677928 7675206 G A 1 0.733205513927931 1 DEL 1 Missense_Mutation 45 0.311111111111111 0 TCGA-BR-8683-01 RYR2 chr1 237679188 237674814 T A 1 0.584467194884393 1 DEL 1 Missense_Mutation 29 0.275862068965517 0 TCGA-BR-8683-01 LRP1B chr2 141070200 141062122 G T 1 0.741423160555018 1 DEL 1 Missense_Mutation 139 0.179856115107914 0 TCGA-BR-8683-01 TTN chr2 178539243 178537773 C A 0.86 0.385217240935115 0.987270886168969 DEL 1 Missense_Mutation 62 0.112903225806452 0 TCGA-BR-8683-01 TTN chr2 178590815 178588115 C G 1 0.751427653234856 1 DEL 1 Missense_Mutation 68 0.264705882352941 0 TCGA-BR-8683-01 TTN chr2 178624560 178618730 G T 0.63 0.237718037482282 0.974300409296782 DEL 1 Missense_Mutation 48 0.0833333333333333 0 TCGA-BR-8683-01 DNAH11 chr7 21592690 21591209 G T 1 0.657003589030033 1 DEL 1 Missense_Mutation 56 0.214285714285714 0 TCGA-BR-8683-01 GLI3 chr7 42028395 42026228 C T 1 0.414650943353437 1 DEL 1 Missense_Mutation 31 0.161290322580645 0 TCGA-BR-8683-01 PCDH15 chr10 54070934 54066757 T A 1 0.477126574041696 1 DEL 1 Missense_Mutation 75 0.12 0 TCGA-BR-8683-01 TP53 chr17 7674523 7674288 A - 1 0.77808952633895 1 DEL 1 Missense_Mutation 47 0.382978723404255 0 TCGA-BR-7704-01 COL11A1 chr1 102991958 102984184 A C 1 0.638131021785258 1 DEL 1 Missense_Mutation 37 0.378378378378378 0 TCGA-BR-7704-01 USH2A chr1 216332100 216325551 T A 1 0.779012666554167 1 DEL 1 Missense_Mutation 53 0.452830188679245 0 TCGA-BR-7704-01 OBSCN chr1 228339810 228338111 G T 1 0.451518619640323 1 DEL 1 Missense_Mutation 22 0.318181818181818 0 TCGA-BR-7704-01 RYR2 chr1 237652507 237649937 T G 0.91 0.701002190210344 1 DEL 1 Missense_Mutation 177 0.282485875706215 0 TCGA-BR-7704-01 RYR2 chr1 237784827 237784220 A G 0.83 0.609604100989605 0.984067417175554 DEL 1 Missense_Mutation 136 0.257352941176471 0 TCGA-BR-7704-01 NRXN1 chr2 51032278 51027867 T G 1 0.689215779743267 1 DEL 1 Missense_Mutation 86 0.267441860465116 0 TCGA-BR-7704-01 THSD7B chr2 137414435 137405618 T A 1 0.849983586868932 1 DEL 1 Missense_Mutation 56 0.517857142857143 0 TCGA-BR-7704-01 LRP2 chr2 169216444 169207166 A C 1 0.796580462858425 1 DEL 1 Missense_Mutation 133 0.293233082706767 0 TCGA-BR-7704-01 TTN chr2 178591607 178589006 T G 1 0.447123849536976 1 DEL 1 Missense_Mutation 21 0.285714285714286 0 TCGA-BR-7704-01 TTN chr2 178645291 178636676 T C 1 0.755796543465803 1 DEL 1 Missense_Mutation 78 0.320512820512821 0 TCGA-BR-7704-01 TTN chr2 178693969 178689334 T C 1 0.742767183627904 1 DEL 1 Missense_Mutation 56 0.357142857142857 0 TCGA-BR-7704-01 TTN chr2 178740894 178739785 T C 1 0.960275444101421 1 DEL 1 Missense_Mutation 283 0.477031802120141 0 TCGA-BR-7704-01 COL6A3 chr2 237386558 237376816 A C 0.47 0.342698442352053 0.612487542667313 DEL 0 Nonsense_Mutation 373 0.109919571045576 1 TCGA-BR-7704-01 ADGRV1 chr5 90658554 90652459 A C 1 0.907812104759704 1 DEL 1 Missense_Mutation 67 0.686567164179104 0 TCGA-BR-7704-01 ADGRV1 chr5 90784776 90778866 T G 1 0.916861491798944 1 DEL 1 Missense_Mutation 128 0.5234375 0 TCGA-BR-7704-01 APC chr5 112843049 112838905 C A 1 0.939799281980422 1 DEL 1 Missense_Mutation 117 0.64957264957265 0 TCGA-BR-7704-01 PCLO chr7 82825835 82822639 T A 0.99 0.802341648742871 1 DEL 1 Missense_Mutation 421 0.232779097387173 0 TCGA-BR-7704-01 PCLO chr7 82920941 82915258 A C 1 0.820958942687839 1 DEL 1 Missense_Mutation 48 0.5 0 TCGA-BR-7704-01 MUC17 chr7 101048393 101042080 G A 0.97 0.801348069070867 1 DEL 1 Missense_Mutation 476 0.228991596638655 0 TCGA-BR-7704-01 PLXNA4 chr7 132149245 132140632 T G 1 0.645443996479416 1 DEL 1 Missense_Mutation 85 0.247058823529412 0 TCGA-BR-7704-01 PREX2 chr8 68069732 68069064 G T 1 0.800427697681504 1 DEL 1 Missense_Mutation 62 0.403225806451613 0 TCGA-BR-7704-01 ZFHX4 chr8 76706340 76704432 A G 1 0.793607519846586 1 DEL 1 Missense_Mutation 189 0.264550264550265 0 TCGA-BR-7704-01 FAM135B chr8 138184427 138177377 T G 0.73 0.438945817954867 0.975075446667341 DEL 1 Missense_Mutation 81 0.172839506172839 0 TCGA-BR-7704-01 ABCC9 chr12 21854302 21844508 G A 1 0.948475111085321 1 DEL 1 Missense_Mutation 148 0.628378378378378 0 TCGA-BR-7704-01 LRRK2 chr12 40364153 40359384 T C 1 0.920493076382431 1 DEL 1 Missense_Mutation 89 0.640449438202247 0 TCGA-BR-7704-01 NALCN chr13 101062129 101062065 A G 1 0.854747669539839 1 DEL 1 Missense_Mutation 81 0.432098765432099 0 TCGA-BR-7704-01 MUC16 chr19 8975756 8974843 G C 1 0.817292923731341 1 DEL 1 Missense_Mutation 176 0.340909090909091 0 TCGA-BR-8370-01 SPTA1 chr1 158644382 158635936 C A 1 0.869025324059256 1 DEL 1 Missense_Mutation 110 0.327272727272727 0 TCGA-BR-8370-01 CNTNAP5 chr2 124452957 124446925 C A 1 0.654356083490925 1 DEL 1 Missense_Mutation 59 0.220338983050847 0 TCGA-BR-8370-01 TTN chr2 178745253 178741211 G C 0.9 0.541235529219879 1 DEL 1 Missense_Mutation 137 0.124087591240876 0 TCGA-BR-8370-01 ERBB4 chr2 211688892 211679109 G A 1 0.59266042022451 1 DEL 1 Missense_Mutation 26 0.307692307692308 0 TCGA-BR-8370-01 PCDH10 chr4 133157314 133155012 C A 1 0.703945960998925 1 DEL 1 Missense_Mutation 60 0.25 0 TCGA-BR-8370-01 ADGRV1 chr5 90650210 90642696 G C 1 0.85904765351965 1 DEL 1 Missense_Mutation 133 0.278195488721804 0 TCGA-BR-8370-01 PKHD1 chr6 52052593 52046177 G T 1 0.879893429670611 1 DEL 1 Missense_Mutation 163 0.276073619631902 0 TCGA-BR-8370-01 GLI3 chr7 41971947 41965516 G A 1 0.73128140428875 1 DEL 1 Missense_Mutation 174 0.14367816091954 0 TCGA-BR-8370-01 CSMD1 chr8 2974114 2965901 C T 1 0.40635283434725 1 DEL 1 Missense_Mutation 18 0.222222222222222 0 TCGA-BR-8370-01 CDH23 chr10 71813265 71809897 G T 1 0.84201311977547 1 DEL 1 Missense_Mutation 114 0.280701754385965 0 TCGA-BR-8370-01 TMEM132D chr12 129075179 129074830 C T 1 0.831136926554672 1 DEL 1 Missense_Mutation 145 0.213793103448276 0 TCGA-BR-8370-01 CDH1 chr16 68813828 68810278 G A 1 0.923763983835197 1 DEL 1 Missense_Mutation 114 0.482456140350877 0 TCGA-BR-8370-01 SMAD4 chr18 51071349 51067036 - GT 1 0.655711264585183 1 DEL 1 Missense_Mutation 85 0.2 0 TCGA-VQ-A8DV-01 APC chr5 112845589 112838198 A C 1 0.706448305468585 1 DEL 1 Missense_Mutation 41 0.365853658536585 0 TCGA-VQ-A8DV-01 SYNE1 chr6 152340801 152331873 G A 1 0.80197902805217 1 DEL 1 Missense_Mutation 110 0.254545454545455 0 TCGA-VQ-A8DV-01 PCDH15 chr10 54075559 54066846 T C 1 0.943038004773203 1 DEL 1 Missense_Mutation 97 0.701030927835051 0 TCGA-VQ-A8DV-01 TP53 chr17 7676137 7675225 - GGCA 1 0.811154599693379 1 DEL 1 Missense_Mutation 25 0.72 0 TCGA-D7-8578-01 HMCN1 chr1 186022162 186019654 A C 0.4 0.283789060523378 0.537488079981962 DEL 0 Nonsense_Mutation 167 0.18562874251497 1 TCGA-D7-8578-01 FAT2 chr5 151552127 151542293 T A 0.42 0.317385763283797 0.538046577332064 DEL 0 Nonsense_Mutation 230 0.195652173913043 1 TCGA-D7-8578-01 FAM135B chr8 138320664 138310853 C T 0.13 0.0577265691996459 0.272139425324716 DEL 0 Nonsense_Mutation 97 0.0618556701030928 1 TCGA-D7-8578-01 FAT3 chr11 92893204 92883364 G A 0.26 0.13805385650048 0.438563189076506 DEL 0 Nonsense_Mutation 84 0.119047619047619 1 TCGA-D7-8578-01 TP53 chr17 7681283 7673803 G T 0.8 0.513356620374486 0.982360820671962 DEL 0 Nonsense_Mutation 43 0.372093023255814 1 TCGA-CG-5724-01 LRP1B chr2 140870428 140867667 T G 1 0.951498701836186 1 DEL 1 Missense_Mutation 180 0.555555555555556 0 TCGA-CG-5724-01 ADGRV1 chr5 90721494 90716577 G A 1 0.62884100494295 1 DEL 1 Missense_Mutation 76 0.223684210526316 0 TCGA-CG-5724-01 PKHD1 chr6 51773595 51772776 T G 1 0.815893794663765 1 DEL 1 Missense_Mutation 114 0.298245614035088 0 TCGA-CG-5724-01 SYNE1 chr6 152169093 152164294 C T 1 0.924403961226082 1 DEL 1 Missense_Mutation 165 0.418181818181818 0 TCGA-CG-5724-01 CSMD1 chr8 3404611 3396281 A C 1 0.471535307433992 1 DEL 1 Missense_Mutation 11 0.454545454545455 0 TCGA-CG-5724-01 TG chr8 133036407 133029940 C T 1 0.540907865336514 1 DEL 1 Missense_Mutation 17 0.411764705882353 0 TCGA-CG-5724-01 TLR4 chr9 117721213 117712940 A C 1 0.974197085612421 1 DEL 0 Silent 239 0.707112970711297 0 TCGA-CG-5724-01 MUC16 chr19 8900878 8900013 A C 1 0.876049779308001 1 DEL 1 Missense_Mutation 54 0.592592592592593 0 TCGA-CG-5724-01 RYR1 chr19 38500182 38492546 C T 0.4 0.183928279138458 0.803435684393621 DEL 0 Nonsense_Mutation 75 0.08 1 TCGA-BR-8590-01 TTN chr2 178560858 178558631 G T 1 0.26688242084368 0.987102648207321 DEL 1 Missense_Mutation 31 0.0967741935483871 0 TCGA-BR-8590-01 TTN chr2 178561727 178558632 G T 1 0.26688242084368 0.987102648207321 DEL 1 Missense_Mutation 31 0.0967741935483871 0 TCGA-BR-8590-01 ERBB4 chr2 211393176 211387029 A C 0.77 0.392176528140026 0.983544098831208 DEL 1 Missense_Mutation 121 0.0743801652892562 0 TCGA-BR-8590-01 SCN10A chr3 38729747 38726966 G C 0.74 0.423387865338644 0.978235137683269 DEL 1 Missense_Mutation 184 0.0706521739130435 0 TCGA-BR-8590-01 FAT4 chr4 125496914 125490030 T C 0.98 0.636335485667786 1 DEL 1 Missense_Mutation 275 0.0945454545454545 0 TCGA-BR-8590-01 RELN chr7 103706958 103697989 C G 0.8 0.454892143645415 0.985088744874486 DEL 1 Missense_Mutation 169 0.0769230769230769 0 TCGA-BR-8590-01 CSMD3 chr8 113284028 113278622 T C 1 0.58958918593066 1 DEL 1 Missense_Mutation 81 0.135802469135802 0 TCGA-BR-8590-01 PCDH15 chr10 54242232 54236926 T G 0.79 0.397278903841072 0.984401304192029 DEL 1 Missense_Mutation 119 0.0756302521008403 0 TCGA-BR-8590-01 ABCC9 chr12 21878266 21872679 A G 1 0.78657090778024 1 DEL 1 Missense_Mutation 231 0.138528138528139 0 TCGA-BR-8590-01 LRRK2 chr12 40313479 40305857 T G 1 0.567132588979582 1 DEL 1 Missense_Mutation 59 0.152542372881356 0 TCGA-BR-8590-01 DNAH9 chr17 11895368 11891921 A C 0.88 0.509546461172193 0.989550072510063 DEL 1 Missense_Mutation 178 0.0842696629213483 0 TCGA-BR-8590-01 DCC chr18 52752666 52752249 C G 0.93 0.424919969498239 0.989526352122843 DEL 1 Missense_Mutation 90 0.0888888888888889 0 TCGA-CG-5725-01 ADGRB3 chr6 68645108 68639307 C T 1 0.891522618560207 1 DEL 1 Missense_Mutation 46 0.804347826086957 0 TCGA-CG-5725-01 ZNF536 chr19 30553659 30548917 G A 1 0.901883924857586 1 DEL 1 Missense_Mutation 120 0.441666666666667 0 TCGA-BR-A4IU-01 SPTA1 chr1 158644708 158636754 A C 1 0.599827495328437 1 DEL 1 Missense_Mutation 65 0.184615384615385 0 TCGA-BR-A4IU-01 TG chr8 133103039 133096341 G A 0.41 0.200688055701836 0.805372844365766 DEL 0 Nonsense_Mutation 121 0.0578512396694215 1 TCGA-BR-A4IU-01 TP53 chr17 7682491 7675139 C T 0.51 0.19977042452685 0.952471170454956 DEL 0 Nonsense_Mutation 48 0.0833333333333333 1 TCGA-HU-A4H6-01 SYNE1 chr6 152331996 152329816 C T 0.41 0.247965654517146 0.659402673649537 DEL 0 Nonsense_Mutation 264 0.0568181818181818 1 TCGA-HU-A4H6-01 NAV3 chr12 78010751 78006868 C T 1 0.574244304603549 1 DEL 1 Missense_Mutation 91 0.164835164835165 0 TCGA-HU-A4H6-01 NBEA chr13 35594210 35593400 G A 1 0.727966041751774 1 DEL 1 Missense_Mutation 107 0.214953271028037 0 TCGA-HU-A4H6-01 RYR1 chr19 38466434 38466291 G A 1 0.622199271603648 1 DEL 1 Missense_Mutation 39 0.256410256410256 0 TCGA-D7-6818-01 FLG2 chr1 152356992 152356135 T G 1 0.983307837566945 1 DEL 0 Silent 603 0.535655058043118 0 TCGA-D7-6818-01 USH2A chr1 215747646 215741462 A G 1 0.699543324170299 1 DEL 1 Missense_Mutation 180 0.172222222222222 0 TCGA-D7-6818-01 USH2A chr1 216206553 216199975 T G 1 0.845085476756078 1 DEL 1 Missense_Mutation 173 0.248554913294798 0 TCGA-D7-6818-01 LRP2 chr2 169181446 169177844 G T 0.97 0.75711720092448 1 DEL 1 Missense_Mutation 360 0.188888888888889 0 TCGA-D7-6818-01 FAT4 chr4 125421619 125414991 A G 1 0.799636397925958 1 DEL 1 Missense_Mutation 241 0.219917012448133 0 TCGA-D7-6818-01 ADGRB3 chr6 69334736 69324959 TGGCAATCATATA - 0.36 0.190496696531348 0.663479739938178 DEL 0 Nonsense_Mutation 152 0.0592105263157895 1 TCGA-D7-6818-01 ADGRB3 chr6 69335414 69332960 T C 1 0.577166046673823 1 DEL 1 Missense_Mutation 53 0.207547169811321 0 TCGA-D7-6818-01 UTRN chr6 144530616 144523041 T G 0.9 0.46243964431065 0.989743661969604 DEL 1 Missense_Mutation 68 0.147058823529412 0 TCGA-D7-6818-01 SYNE1 chr6 152491927 152488498 T G 0.93 0.34955862483281 0.988212744834657 DEL 1 Missense_Mutation 33 0.151515151515152 0 TCGA-D7-6818-01 CSMD1 chr8 2972808 2965949 T G 1 0.635433915404731 1 DEL 1 Missense_Mutation 31 0.32258064516129 0 TCGA-D7-6818-01 ZFHX4 chr8 76707798 76704168 T C 1 0.496643452360605 1 DEL 1 Missense_Mutation 41 0.195121951219512 0 TCGA-D7-6818-01 PCDH15 chr10 53830953 53823048 T C 1 0.68808523458775 1 DEL 1 Missense_Mutation 193 0.16580310880829 0 TCGA-D7-6818-01 DYNC2H1 chr11 103255735 103253304 A C 1 0.832282919276902 1 DEL 1 Missense_Mutation 59 0.440677966101695 0 TCGA-D7-6818-01 NALCN chr13 101068090 101065536 T G 0.98 0.571389522051462 1 DEL 1 Missense_Mutation 142 0.119718309859155 0 TCGA-D7-6818-01 NALCN chr13 101408295 101399066 C T 1 0.959644735515473 1 DEL 0 Silent 146 0.657534246575342 0 TCGA-D7-6818-01 TP53 chr17 7683717 7673778 CGCCGGT - 1 0.820353004210175 1 DEL 1 Missense_Mutation 49 0.469387755102041 0 TCGA-D7-6818-01 MUC16 chr19 8961388 8952202 T C 0.9 0.562323368577393 1 DEL 1 Missense_Mutation 109 0.174311926605505 0 TCGA-HU-A4GY-01 HMCN1 chr1 185986974 185977879 C T 0.92 0.401697551689832 0.989057252144767 DEL 1 Missense_Mutation 74 0.0945945945945946 0 TCGA-HU-A4GY-01 COL12A1 chr6 75139296 75137495 C T 1 0.531787149380506 1 DEL 1 Missense_Mutation 37 0.189189189189189 0 TCGA-HU-A4GY-01 MUC16 chr19 8905945 8897517 C T 1 0.737429346871983 1 DEL 1 Missense_Mutation 275 0.12 0 TCGA-HU-A4GY-01 MUC16 chr19 8908739 8905036 T G 0.69 0.355014452703692 0.974314588410134 DEL 1 Missense_Mutation 128 0.0703125 0 TCGA-EQ-A4SO-01 FLG chr1 152310488 152305435 C A 1 0.97732937647776 1 DEL 1 Missense_Mutation 471 0.535031847133758 0 TCGA-EQ-A4SO-01 HMCN1 chr1 186162299 186153933 T C 1 0.85386932823984 1 DEL 1 Missense_Mutation 69 0.492753623188406 0 TCGA-EQ-A4SO-01 RYR2 chr1 237505104 237503497 A G 0.85 0.653785427359571 0.986276087080547 DEL 1 Missense_Mutation 276 0.184782608695652 0 TCGA-EQ-A4SO-01 CNTNAP5 chr2 124751411 124747370 C T 0.96 0.759998800823057 1 DEL 1 Missense_Mutation 166 0.367469879518072 0 TCGA-EQ-A4SO-01 TTN chr2 178575964 178573214 A - 1 0.761037211494268 1 DEL 1 Missense_Mutation 112 0.392857142857143 0 TCGA-EQ-A4SO-01 TTN chr2 178715751 178706523 CTTCCTTTCATCCACCTGTAAGTTAA - 0.89 0.590964235385323 1 DEL 1 Missense_Mutation 62 0.338709677419355 0 TCGA-EQ-A4SO-01 DNAH7 chr2 196022168 196019226 C G 0.76 0.550375160162493 0.963423827349227 DEL 0 Nonsense_Mutation 103 0.29126213592233 1 TCGA-EQ-A4SO-01 DNAH5 chr5 13802881 13794030 C T 0.86 0.561075226524764 0.988582222204367 DEL 1 Missense_Mutation 58 0.327586206896552 0 TCGA-EQ-A4SO-01 NAV3 chr12 78022466 78021769 A G 0.65 0.438855786028734 0.895037781535387 DEL 0 Nonsense_Mutation 89 0.247191011235955 1 TCGA-EQ-A4SO-01 SACS chr13 23357057 23355924 A G 1 0.699930450698295 1 DEL 1 Missense_Mutation 55 0.418181818181818 0 TCGA-EQ-A4SO-01 SLITRK5 chr13 87680426 87677580 GCGTGTACGGCGGCGGCGGCGGCACGGGCGGCCACCCACACGCGCACGT - 1 0.970724998201144 1 DEL 1 Missense_Mutation 208 0.754807692307692 0 TCGA-EQ-A4SO-01 KIF2B chr17 53827318 53825029 C T 0.84 0.544569379372408 0.987286890055496 DEL 1 Missense_Mutation 56 0.321428571428571 0 TCGA-EQ-A4SO-01 MUC16 chr19 8890743 8888860 C A 1 0.819936800503921 1 DEL 1 Missense_Mutation 151 0.410596026490066 0 TCGA-EQ-A4SO-01 MUC16 chr19 8981186 8979497 G T 1 0.772703637400967 1 DEL 1 Missense_Mutation 78 0.435897435897436 0 TCGA-D7-A748-01 AHNAK2 chr14 104947188 104941106 G A 0.68 0.300872744676028 0.976860948222853 DEL 1 Missense_Mutation 107 0.0560747663551402 0 TCGA-BR-8380-01 RYR2 chr1 237712035 237707035 G A 1 0.597425146617057 1 DEL 1 Missense_Mutation 71 0.154929577464789 0 TCGA-BR-8380-01 DNAH5 chr5 13777779 13769036 G C 0.97 0.535723031183232 1 DEL 1 Missense_Mutation 136 0.102941176470588 0 TCGA-FP-A4BF-01 RYR2 chr1 237642782 237633708 T C 1 0.808018706623444 1 DEL 1 Missense_Mutation 68 0.338235294117647 0 TCGA-FP-A4BF-01 DCHS2 chr4 154329201 154320784 C T 0.58 0.368226583348545 0.862949306053059 DEL 0 Nonsense_Mutation 147 0.122448979591837 1 TCGA-FP-A4BF-01 PKHD1 chr6 51755930 51754934 T C 1 0.931538367650041 1 DEL 1 Missense_Mutation 128 0.5234375 0 TCGA-FP-A4BF-01 SDK1 chr7 4236748 4233271 C A 0.45 0.244701470615233 0.786334652674185 DEL 0 Nonsense_Mutation 127 0.078740157480315 1 TCGA-FP-A4BF-01 ABCA13 chr7 48225725 48219466 A G 0.62 0.428390516282224 0.877394610961096 DEL 0 Nonsense_Mutation 238 0.109243697478992 1 TCGA-FP-A4BF-01 FAT3 chr11 92800197 92799121 G T 0.9 0.479703446504202 0.989768641687041 DEL 1 Missense_Mutation 58 0.189655172413793 0 TCGA-FP-A4BF-01 LRRK2 chr12 40284125 40283948 G A 1 0.880028457876911 1 DEL 1 Missense_Mutation 90 0.444444444444444 0 TCGA-FP-A4BF-01 SACS chr13 23342057 23333092 A G 0.78 0.42846719906767 0.982831916676658 DEL 1 Missense_Mutation 67 0.164179104477612 0 TCGA-FP-A4BF-01 NBEA chr13 35678156 35668474 G A 0.87 0.467855354487204 0.988611837210825 DEL 1 Missense_Mutation 60 0.183333333333333 0 TCGA-FP-A4BF-01 NALCN chr13 101061315 101059904 G A 1 0.788823387877926 1 DEL 1 Missense_Mutation 106 0.292452830188679 0 TCGA-FP-A4BF-01 MUC16 chr19 8956139 8946163 A C 0.9 0.509300585632501 1 DEL 1 Missense_Mutation 68 0.191176470588235 0 TCGA-FP-A4BF-01 MUC16 chr19 8965827 8956617 A G 1 0.846725959708716 1 DEL 1 Missense_Mutation 306 0.245098039215686 0 TCGA-HU-A4GF-01 FLG chr1 152316191 152313565 C T 1 0.977737029667607 1 DEL 1 Missense_Mutation 287 0.693379790940767 0 TCGA-HU-A4GF-01 SPTA1 chr1 158624160 158615324 A G 0.74 0.554415831608182 0.942511705686482 DEL 0 Nonsense_Mutation 238 0.176470588235294 1 TCGA-HU-A4GF-01 SPTA1 chr1 158656994 158651428 T C 0.97 0.744059487634118 1 DEL 1 Missense_Mutation 256 0.23046875 0 TCGA-HU-A4GF-01 HMCN1 chr1 185929657 185923573 T A 1 0.822456223018362 1 DEL 1 Missense_Mutation 100 0.35 0 TCGA-HU-A4GF-01 OBSCN chr1 228275716 228274222 G A 1 0.93625748658083 1 DEL 0 Silent 74 0.810810810810811 0 TCGA-HU-A4GF-01 FMN2 chr1 240212196 240207255 T C 1 0.640709321856895 1 DEL 1 Missense_Mutation 74 0.256756756756757 0 TCGA-HU-A4GF-01 NRXN1 chr2 50062615 50053462 C T 0.77 0.491347203049669 0.979429785411741 DEL 1 Missense_Mutation 98 0.183673469387755 0 TCGA-HU-A4GF-01 LRP2 chr2 169235670 169231822 A - 0.34 0.146082312082727 0.717719942897575 DEL 0 Nonsense_Mutation 47 0.106382978723404 1 TCGA-HU-A4GF-01 DNAH7 chr2 196021379 196012899 G A 0.62 0.340252599203414 0.942670317444845 DEL 0 Nonsense_Mutation 52 0.192307692307692 1 TCGA-HU-A4GF-01 CTNND2 chr5 11391760 11384778 G A 1 0.503674130173015 1 DEL 1 Missense_Mutation 40 0.2 0 TCGA-HU-A4GF-01 CSMD1 chr8 2977333 2973283 G T 0.43 0.296309284035636 0.606541377857227 DEL 0 Nonsense_Mutation 192 0.135416666666667 1 TCGA-HU-A4GF-01 CDH23 chr10 71785898 71784403 C T 0.25 0.0950684720603371 0.577493189317927 DEL 0 Nonsense_Mutation 52 0.0769230769230769 1 TCGA-HU-A4GF-01 LRRK2 chr12 40285142 40278146 A C 0.58 0.40097176516392 0.812398146429289 DEL 0 Nonsense_Mutation 137 0.182481751824818 1 TCGA-HU-A4GF-01 TP53 chr17 7676529 7675224 G C 1 0.826524209752255 1 DEL 1 Missense_Mutation 35 0.657142857142857 0 TCGA-HU-A4GF-01 DNAH9 chr17 11813198 11810316 C A 0.88 0.588819029716462 0.989916307348672 DEL 1 Missense_Mutation 84 0.273809523809524 0 TCGA-HU-A4GF-01 DCC chr18 53530610 53526746 A T 0.7 0.453223488819275 0.957330176872054 DEL 0 Nonsense_Mutation 82 0.219512195121951 1 TCGA-HU-8244-01 NEB chr2 151670720 151666212 C A 0.76 0.5908685132375 0.939553621312368 DEL 0 Nonsense_Mutation 140 0.328571428571429 1 TCGA-HU-8244-01 LRP2 chr2 169242206 169239625 G C 1 0.881133172864018 1 DEL 1 Missense_Mutation 91 0.582417582417582 0 TCGA-HU-8244-01 COL6A3 chr2 237366185 237359217 C T 0.9 0.694501624059273 1 DEL 1 Missense_Mutation 122 0.385245901639344 0 TCGA-HU-8244-01 CTNNB1 chr3 41232873 41225169 TGCAA - 0.16 0.0536671008400773 0.428989160235444 DEL 0 Nonsense_Mutation 43 0.0697674418604651 1 TCGA-HU-8244-01 ADGRV1 chr5 90663023 90653568 G A 0.98 0.540336008275413 1 DEL 1 Missense_Mutation 26 0.423076923076923 0 TCGA-HU-8244-01 RIMS1 chr6 72280483 72274359 T C 1 0.786265541753323 1 DEL 1 Missense_Mutation 38 0.605263157894737 0 TCGA-HU-8244-01 SYNE1 chr6 152469423 152461656 G C 0.81 0.607805241243496 0.976668408661539 DEL 1 Missense_Mutation 103 0.349514563106796 0 TCGA-HU-8244-01 FAT3 chr11 92874422 92867087 G A 1 0.449131676806562 1 DEL 1 Missense_Mutation 9 0.555555555555556 0 TCGA-HU-8244-01 PCDH17 chr13 57640364 57634380 G A 0.93 0.626708700385655 1 DEL 1 Missense_Mutation 55 0.4 0 TCGA-HU-8244-01 SLITRK5 chr13 87681661 87676583 G A 1 0.681420134639648 1 DEL 1 Missense_Mutation 55 0.436363636363636 0 TCGA-HU-8244-01 TP53 chr17 7678871 7674947 A G 0.94 0.575767521252114 1 DEL 1 Missense_Mutation 37 0.405405405405405 0 TCGA-HU-8610-01 FLG chr1 152315242 152310247 C T 1 0.813705361914456 1 DEL 1 Missense_Mutation 559 0.123434704830054 0 TCGA-HU-8610-01 OBSCN chr1 228221081 228211815 G A 1 0.492878027814938 1 DEL 1 Missense_Mutation 30 0.2 0 TCGA-HU-8610-01 TTN chr2 178558803 178553691 C T 0.93 0.403910848080954 0.989205124649554 DEL 1 Missense_Mutation 68 0.102941176470588 0 TCGA-HU-8610-01 TTN chr2 178800978 178795180 C G 1 0.804173350168425 1 DEL 1 Missense_Mutation 100 0.24 0 TCGA-HU-8610-01 DOCK2 chr5 170015148 170008704 C T 1 0.583714222704316 1 DEL 1 Missense_Mutation 119 0.142857142857143 0 TCGA-HU-8610-01 TG chr8 132915994 132913079 C T 1 0.719360608119482 1 DEL 1 Missense_Mutation 83 0.192771084337349 0 TCGA-HU-8610-01 NAV3 chr12 78055496 78050863 G T 0.93 0.468374899736574 1 DEL 1 Missense_Mutation 86 0.116279069767442 0 TCGA-HU-8610-01 TP53 chr17 7674615 7674206 GTCTTCCAGTGTGATGATGGT - 0.74 0.324012357002884 0.981596329683453 DEL 1 Missense_Mutation 65 0.0923076923076923 0 TCGA-HU-8245-01 HMCN1 chr1 185978787 185977865 A G 0.33 0.180152590552658 0.582099411044329 DEL 0 Nonsense_Mutation 120 0.0833333333333333 1 TCGA-HU-8245-01 NEB chr2 151556634 151548382 C T 0.76 0.453440605937794 0.979123871433742 DEL 1 Missense_Mutation 74 0.189189189189189 0 TCGA-HU-8245-01 APC chr5 112839593 112838774 A - 1 0.689697887306101 1 DEL 1 Missense_Mutation 44 0.409090909090909 0 TCGA-HU-8245-01 TP53 chr17 7674956 7674242 A - 0.98 0.617575697158808 1 DEL 1 Missense_Mutation 58 0.327586206896552 0 TCGA-CG-4301-01 LRP2 chr2 169179137 169172083 C T 1 0.790765492069748 1 DEL 1 Missense_Mutation 106 0.254716981132075 0 TCGA-CG-4301-01 CUBN chr10 17115527 17110955 T A 1 0.773987360882912 1 DEL 1 Missense_Mutation 87 0.28735632183908 0 TCGA-CG-4301-01 NBEA chr13 35205303 35195904 A C 1 0.706073740484061 1 DEL 1 Missense_Mutation 254 0.0905511811023622 0 TCGA-CG-4301-01 EPB41L3 chr18 5404375 5398077 G A 1 0.90077043493616 1 DEL 0 Silent 378 0.224867724867725 0 TCGA-CG-4301-01 DCC chr18 53217493 53207706 A G 0.6 0.304880948131988 0.955957005867785 DEL 0 Nonsense_Mutation 84 0.0952380952380952 1 TCGA-CG-4476-01 THSD7B chr2 137619578 137616245 G A 1 0.843876314569621 1 DEL 1 Missense_Mutation 206 0.179611650485437 0 TCGA-CG-4476-01 LRP1B chr2 140903228 140902965 C G 1 0.661172541687282 1 DEL 1 Missense_Mutation 131 0.129770992366412 0 TCGA-CG-4476-01 FAT4 chr4 125425317 125415802 T G 0.83 0.24114462294793 0.983992790360297 DEL 1 Missense_Mutation 37 0.0810810810810811 0 TCGA-CG-4476-01 APC chr5 112845307 112838985 C T 1 0.918316859106355 1 DEL 0 Silent 106 0.452830188679245 0 TCGA-CG-4476-01 APC chr5 112846975 112839942 C T 0.9 0.394111049693151 0.988456088480795 DEL 1 Missense_Mutation 87 0.0804597701149425 0 TCGA-CG-4476-01 COL12A1 chr6 75152259 75152192 G C 1 0.569670555586103 1 DEL 1 Missense_Mutation 72 0.138888888888889 0 TCGA-CG-4476-01 SDK1 chr7 4022899 4017193 G A 1 0.506182740459529 1 DEL 1 Missense_Mutation 85 0.0941176470588235 0 TCGA-CG-4476-01 ABCC9 chr12 21842760 21842406 C T 0.52 0.253177201584487 0.930174857600223 DEL 0 Nonsense_Mutation 136 0.0514705882352941 1 TCGA-CG-4476-01 DCLK1 chr13 35815133 35805713 G T 0.93 0.586331719278855 1 DEL 1 Missense_Mutation 312 0.0705128205128205 0 TCGA-CG-4476-01 SLITRK5 chr13 87679241 87678188 G T 1 0.9052638528763 1 DEL 1 Missense_Mutation 344 0.174418604651163 0 TCGA-CG-4476-01 DNAH3 chr16 21022236 21021993 C T 1 0.651350145073829 1 DEL 1 Missense_Mutation 40 0.25 0 TCGA-CG-4476-01 MUC16 chr19 8887653 8883483 G T 0.86 0.358298377012656 0.986931339985502 DEL 1 Missense_Mutation 71 0.0845070422535211 0 TCGA-RD-A8N5-01 HMCN1 chr1 186131574 186128219 C T 0.42 0.180550864704203 0.862982835879112 DEL 0 Nonsense_Mutation 56 0.0892857142857143 1 TCGA-RD-A8N5-01 COL12A1 chr6 75167674 75165693 G A 0.28 0.117035494048115 0.607279207729018 DEL 0 Nonsense_Mutation 85 0.0588235294117647 1 TCGA-RD-A8N5-01 TAF1L chr9 32633587 32630490 G A 0.5 0.289195167913381 0.825256689287582 DEL 0 Nonsense_Mutation 112 0.107142857142857 1 TCGA-FP-8631-01 TTN chr2 178564875 178559368 C A 1 0.724215757749905 1 DEL 1 Missense_Mutation 166 0.186746987951807 0 TCGA-FP-8631-01 SCN10A chr3 38746392 38739528 C T 0.93 0.512759792732907 1 DEL 1 Missense_Mutation 52 0.230769230769231 0 TCGA-FP-8631-01 DNAH11 chr7 21565748 21558892 A G 1 0.70149989314816 1 DEL 1 Missense_Mutation 39 0.307692307692308 0 TCGA-FP-8631-01 GLI3 chr7 42085347 42076809 G T 1 0.528935926805766 1 DEL 1 Missense_Mutation 72 0.166666666666667 0 TCGA-FP-8631-01 TP53 chr17 7681124 7674230 C T 1 0.940637450736321 1 DEL 0 Silent 103 0.660194174757282 0 TCGA-BR-4253-01 ARID1A chr1 26775610 26773821 C T 1 0.929909925801088 1 DEL 1 Missense_Mutation 211 0.383886255924171 0 TCGA-BR-4253-01 USH2A chr1 216327074 216323495 T A 0.89 0.595771238426901 1 DEL 1 Missense_Mutation 139 0.179856115107914 0 TCGA-BR-4253-01 PIK3CA chr3 179206240 179203765 T A 0.83 0.478690609563989 0.987187056542317 DEL 1 Missense_Mutation 77 0.168831168831169 0 TCGA-BR-4253-01 MUC17 chr7 101044793 101036029 C T 1 0.812206959625169 1 DEL 1 Missense_Mutation 235 0.234042553191489 0 TCGA-BR-4253-01 RELN chr7 103707337 103698005 C A 1 0.820011967531301 1 DEL 1 Missense_Mutation 190 0.252631578947368 0 TCGA-BR-4253-01 GRM5 chr11 89049547 89047422 A G 1 0.577486989887652 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-BR-4253-01 AHNAK2 chr14 104948466 104939512 C T 0.77 0.396112427548654 0.982620328329115 DEL 1 Missense_Mutation 58 0.155172413793103 0 TCGA-CG-5730-01 FLG chr1 152307323 152305057 G A 0.59 0.490063042630285 0.703915069443712 DEL 0 Nonsense_Mutation 917 0.114503816793893 1 TCGA-CG-5730-01 HMCN1 chr1 186088573 186086341 C G 1 0.735325031207682 1 DEL 1 Missense_Mutation 184 0.206521739130435 0 TCGA-CG-5730-01 RYR2 chr1 237730878 237723249 T C 1 0.899416508225331 1 DEL 1 Missense_Mutation 168 0.345238095238095 0 TCGA-CG-5730-01 TTN chr2 178601086 178591825 C T 1 0.727654253647428 1 DEL 1 Missense_Mutation 122 0.262295081967213 0 TCGA-CG-5730-01 TTN chr2 178629234 178624576 C T 1 0.930834933798209 1 DEL 1 Missense_Mutation 148 0.493243243243243 0 TCGA-CG-5730-01 FAT4 chr4 125497562 125490123 C T 1 0.771012416703836 1 DEL 1 Missense_Mutation 100 0.36 0 TCGA-CG-5730-01 GLI3 chr7 41969126 41964653 C T 1 0.611056162677099 1 DEL 1 Missense_Mutation 68 0.25 0 TCGA-CG-5730-01 CSMD3 chr8 113025375 113019070 G C 1 0.97176418827763 1 DEL 0 Silent 307 0.527687296416938 0 TCGA-CG-5730-01 PCDH17 chr13 57635080 57633582 G A 1 0.666757146772837 1 DEL 1 Missense_Mutation 89 0.202247191011236 0 TCGA-CG-5730-01 TP53 chr17 7684346 7674872 T C 1 0.869942843618823 1 DEL 1 Missense_Mutation 34 0.823529411764706 0 TCGA-FP-8211-01 PCDH10 chr4 133158982 133154996 G A 0.63 0.352929472687 0.933036792474628 DEL 0 Nonsense_Mutation 33 0.303030303030303 1 TCGA-FP-8211-01 APC chr5 112847215 112839986 AGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAG - 0.69 0.47260196400117 0.919986932143286 DEL 0 Nonsense_Mutation 66 0.333333333333333 1 TCGA-FP-8211-01 CDH23 chr10 71742766 71734288 T C 1 0.538696183583587 1 DEL 1 Missense_Mutation 19 0.421052631578947 0 TCGA-FP-8211-01 NBEA chr13 35355925 35352197 A G 1 0.563696801125615 1 DEL 1 Missense_Mutation 35 0.342857142857143 0 TCGA-FP-8211-01 NBEA chr13 35657108 35655611 G C 1 0.798653845662483 1 DEL 1 Missense_Mutation 265 0.256603773584906 0 TCGA-FP-8211-01 ZNF536 chr19 30446652 30444503 A G 0.5 0.329698423120563 0.718998640981467 DEL 0 Nonsense_Mutation 129 0.162790697674419 1 TCGA-FP-8211-01 RYR1 chr19 38576896 38573281 G C 0.82 0.408878944976025 0.985795359916601 DEL 1 Missense_Mutation 30 0.266666666666667 0 TCGA-VQ-A8PC-01 FLG chr1 152317970 152310723 C T 0.49 0.335277793157833 0.709207306417911 DEL 0 Nonsense_Mutation 502 0.051792828685259 1 TCGA-VQ-A8PC-01 HMCN1 chr1 185918719 185909377 T C 1 0.61448654912255 1 DEL 1 Missense_Mutation 119 0.126050420168067 0 TCGA-VQ-A8PC-01 THSD7B chr2 137095278 137095101 A C 1 0.733370111949461 1 DEL 1 Missense_Mutation 59 0.254237288135593 0 TCGA-VQ-A8PC-01 LRP1B chr2 141026635 141020048 C A 0.89 0.483162474690073 0.989798166750303 DEL 1 Missense_Mutation 128 0.09375 0 TCGA-VQ-A8PC-01 TTN chr2 178734079 178731539 G A 1 0.581111548942043 1 DEL 1 Missense_Mutation 50 0.18 0 TCGA-VQ-A8PC-01 ADGRB3 chr6 68956438 68956080 A C 1 0.61340418901217 1 DEL 1 Missense_Mutation 39 0.230769230769231 0 TCGA-VQ-A8PC-01 DNAH11 chr7 21707056 21702741 A C 1 0.511063927715812 1 DEL 1 Missense_Mutation 46 0.152173913043478 0 TCGA-VQ-A8PC-01 FAM135B chr8 138133852 138132753 A C 1 0.71046094919652 1 DEL 1 Missense_Mutation 206 0.12621359223301 0 TCGA-VQ-A8PC-01 PCDH15 chr10 53823401 53822628 G C 0.59 0.248650741150393 0.967037064248942 DEL 1 Missense_Mutation 89 0.0561797752808989 0 TCGA-VQ-A8PC-01 GRM5 chr11 88575867 88567260 A C 1 0.737497302951436 1 DEL 1 Missense_Mutation 92 0.195652173913043 0 TCGA-VQ-A8PC-01 SACS chr13 23337380 23334132 C T 1 0.751147073661883 1 DEL 1 Missense_Mutation 103 0.184466019417476 0 TCGA-VQ-A8PC-01 PCDH17 chr13 57635527 57634806 G - 1 0.527268338106311 1 DEL 1 Missense_Mutation 41 0.170731707317073 0 TCGA-VQ-A8PC-01 AHNAK2 chr14 104963169 104953755 T C 0.72 0.417414393248296 0.975831793169267 DEL 1 Missense_Mutation 154 0.0844155844155844 0 TCGA-VQ-A8PC-01 DNAH9 chr17 11910312 11902849 C A 0.7 0.331469318704746 0.97824458137937 DEL 1 Missense_Mutation 85 0.0823529411764706 0 TCGA-VQ-A8PC-01 LAMA1 chr18 7054490 7050933 A G 1 0.490717366911123 1 DEL 1 Missense_Mutation 35 0.171428571428571 0 TCGA-VQ-A8PC-01 DCC chr18 53212406 53205276 T G 1 0.769266712812696 1 DEL 1 Missense_Mutation 230 0.139130434782609 0 TCGA-VQ-A8PC-01 MUC16 chr19 8987029 8977598 T A 0.64 0.331984947375062 0.964315330057717 DEL 0 Nonsense_Mutation 135 0.0666666666666667 1 TCGA-VQ-A8PC-01 ZNF208 chr19 21975692 21974287 - CAAACTACATAAGCAAGA 0.75 0.327236215809918 0.982463104989018 DEL 1 Missense_Mutation 76 0.0789473684210526 0 TCGA-F1-6875-01 APC chr5 112835879 112827194 C T 1 0.910588213694474 1 DEL 1 Missense_Mutation 52 0.807692307692308 0 TCGA-F1-6875-01 CSMD3 chr8 112315961 112314489 T C 1 0.93062614673875 1 DEL 1 Missense_Mutation 156 0.391025641025641 0 TCGA-F1-6875-01 TLR4 chr9 117717554 117712756 C A 1 0.807517504890482 1 DEL 1 Missense_Mutation 84 0.297619047619048 0 TCGA-F1-6875-01 FAT3 chr11 92845679 92844697 C T 1 0.556739565977648 1 DEL 1 Missense_Mutation 15 0.4 0 TCGA-CD-8535-01 RYR2 chr1 237450567 237445521 A T 0.52 0.242688127512298 0.928385120219002 DEL 0 Nonsense_Mutation 43 0.13953488372093 1 TCGA-CD-8535-01 LRP1B chr2 140841286 140840951 T G 1 0.868407256393763 1 DEL 0 Silent 73 0.561643835616438 0 TCGA-CD-8535-01 TTN chr2 178576894 178567146 G C 1 0.821735492233967 1 DEL 1 Missense_Mutation 94 0.446808510638298 0 TCGA-CD-8535-01 TTN chr2 178682278 178679395 G T 0.8 0.503563336884323 0.983257249591634 DEL 1 Missense_Mutation 55 0.290909090909091 0 TCGA-CD-8535-01 TTN chr2 178703973 178695394 T A 1 0.682467176971398 1 DEL 1 Missense_Mutation 67 0.373134328358209 0 TCGA-CD-8535-01 TTN chr2 178731316 178728626 T C 1 0.670890432675764 1 DEL 1 Missense_Mutation 29 0.482758620689655 0 TCGA-CD-8535-01 CTNND2 chr5 11420581 11411645 T G 1 0.739899381300156 1 DEL 1 Missense_Mutation 47 0.404255319148936 0 TCGA-CD-8535-01 APC chr5 112844675 112840255 - A 1 0.880232409989402 1 DEL 1 Missense_Mutation 49 0.795918367346939 0 TCGA-CD-8535-01 PKHD1 chr6 51622433 51619295 T C 1 0.806668059763467 1 DEL 1 Missense_Mutation 57 0.508771929824561 0 TCGA-CD-8535-01 PCLO chr7 82917302 82915972 T G 1 0.975099431992462 1 DEL 1 Missense_Mutation 478 0.468619246861925 0 TCGA-CD-8535-01 MUC17 chr7 101035912 101032057 G T 1 0.962038071835022 1 DEL 1 Missense_Mutation 250 0.548 0 TCGA-CD-8535-01 MUC17 chr7 101037655 101032588 G A 1 0.970853345106016 1 DEL 1 Missense_Mutation 332 0.545180722891566 0 TCGA-CD-8535-01 PLXNA4 chr7 132183801 132174860 A C 1 0.757985200060674 1 DEL 1 Missense_Mutation 79 0.341772151898734 0 TCGA-CD-8535-01 TRPA1 chr8 72061384 72057782 C T 1 0.863965401731499 1 DEL 1 Missense_Mutation 96 0.395833333333333 0 TCGA-CD-8535-01 RIMS2 chr8 103944173 103942828 T C 0.87 0.470148400556111 0.98885563341169 DEL 1 Missense_Mutation 60 0.183333333333333 0 TCGA-CD-8535-01 CSMD3 chr8 112233141 112224839 C T 1 0.933939798933689 1 DEL 1 Missense_Mutation 209 0.406698564593301 0 TCGA-CD-8535-01 CSMD3 chr8 112247657 112244550 T A 1 0.809171178989466 1 DEL 1 Missense_Mutation 91 0.32967032967033 0 TCGA-CD-8535-01 FAM135B chr8 138154000 138152497 C A 1 0.742990495154562 1 DEL 1 Missense_Mutation 114 0.254385964912281 0 TCGA-CD-8535-01 ABCC9 chr12 21900410 21894158 G A 1 0.910208160193917 1 DEL 1 Missense_Mutation 46 0.891304347826087 0 TCGA-CD-8535-01 TP53 chr17 7681865 7673704 G A 1 0.912811808615722 1 DEL 1 Missense_Mutation 52 0.846153846153846 0 TCGA-CD-8535-01 LAMA1 chr18 6944420 6943299 T G 1 0.934402297448929 1 DEL 1 Missense_Mutation 124 0.580645161290323 0 TCGA-CD-8535-01 LAMA1 chr18 7034752 7034596 A T 1 0.919532827038873 1 DEL 1 Missense_Mutation 98 0.581632653061224 0 TCGA-IN-A6RR-01 USH2A chr1 215648714 215648588 G A 1 0.887211234484974 1 DEL 1 Missense_Mutation 117 0.384615384615385 0 TCGA-IN-A6RR-01 TTN chr2 178573106 178563172 C T 1 0.973603150332143 1 DEL 1 Missense_Mutation 355 0.507042253521127 0 TCGA-IN-A6RR-01 TTN chr2 178742908 178741441 T C 1 0.975401342063585 1 DEL 0 Silent 357 0.532212885154062 0 TCGA-IN-A6RR-01 SCN10A chr3 38702404 38698493 C T 0.32 0.155227319510423 0.633729773307751 DEL 0 Nonsense_Mutation 116 0.0603448275862069 1 TCGA-IN-A6RR-01 FAT2 chr5 151512723 151510151 G A 1 0.787573015800936 1 DEL 1 Missense_Mutation 125 0.288 0 TCGA-IN-A6RR-01 FAT2 chr5 151554131 151544918 A T 1 0.875868201310235 1 DEL 1 Missense_Mutation 108 0.407407407407407 0 TCGA-IN-A6RR-01 TG chr8 133019600 133011918 C A 1 0.980832382179926 1 DEL 0 Silent 634 0.429022082018927 0 TCGA-IN-A6RR-01 DYNC2H1 chr11 103309444 103304622 T G 1 0.824284435425797 1 DEL 1 Missense_Mutation 66 0.393939393939394 0 TCGA-IN-A6RR-01 AHNAK2 chr14 104951097 104947176 C A 1 0.917456350897388 1 DEL 0 Silent 272 0.338235294117647 0 TCGA-IN-A6RR-01 TP53 chr17 7676521 7675164 CGGGCGGGGGTGT - 1 0.938129320126919 1 DEL 1 Missense_Mutation 83 0.746987951807229 0 TCGA-IN-A6RR-01 ZNF208 chr19 21975310 21974456 C G 1 0.880393571821377 1 DEL 1 Missense_Mutation 86 0.441860465116279 0 TCGA-D7-8576-01 SDK1 chr7 4155607 4149315 C T 0.44 0.152947676469199 0.933108782997934 DEL 0 Nonsense_Mutation 25 0.12 1 TCGA-D7-8576-01 ABCC9 chr12 21806921 21805281 G C 1 0.712061055354802 1 DEL 1 Missense_Mutation 57 0.350877192982456 0 TCGA-D7-8576-01 TP53 chr17 7678955 7673803 G A 1 0.792021501852279 1 DEL 1 Missense_Mutation 31 0.645161290322581 0 TCGA-D7-8576-01 KIF2B chr17 53831445 53824544 G A 1 0.767696792481895 1 DEL 1 Missense_Mutation 75 0.36 0 TCGA-RD-A7BW-01 ZFHX4 chr8 76709178 76704190 A C 1 0.72783656426279 1 DEL 1 Missense_Mutation 77 0.194805194805195 0 TCGA-RD-A7BW-01 ZFHX4 chr8 76860051 76853474 C T 1 0.594248326255685 1 DEL 1 Missense_Mutation 127 0.102362204724409 0 TCGA-RD-A7BW-01 TENM4 chr11 78670644 78670437 G A 1 0.541659705295809 1 DEL 1 Missense_Mutation 79 0.113924050632911 0 TCGA-RD-A7BW-01 DNAH9 chr17 11756523 11747619 A T 1 0.458873023715105 1 DEL 1 Missense_Mutation 92 0.0869565217391304 0 TCGA-HU-8608-01 ARID1A chr1 26697830 26696929 C T 1 0.513238897752572 1 DEL 1 Missense_Mutation 18 0.333333333333333 0 TCGA-HU-8608-01 TTN chr2 178582012 178573848 C A 1 0.632767671017779 1 DEL 1 Missense_Mutation 120 0.175 0 TCGA-HU-8608-01 PIK3CA chr3 179212539 179203765 T A 0.94 0.606221344405386 1 DEL 1 Missense_Mutation 145 0.158620689655172 0 TCGA-HU-8608-01 PIK3CA chr3 179204619 179204536 G A 1 0.639585521883232 1 DEL 1 Missense_Mutation 142 0.169014084507042 0 TCGA-HU-8608-01 CSMD1 chr8 3239231 3230180 C T 1 0.589888553494703 1 DEL 1 Missense_Mutation 57 0.210526315789474 0 TCGA-HU-8608-01 ZFHX4 chr8 76710299 76706110 T A 1 0.689505328424235 1 DEL 1 Missense_Mutation 86 0.22093023255814 0 TCGA-HU-8608-01 MUC16 chr19 8955894 8949043 C A 1 0.686518920292893 1 DEL 1 Missense_Mutation 156 0.179487179487179 0 TCGA-HU-A4GD-01 TTN chr2 178552217 178543953 G C 1 0.84456198414738 1 DEL 1 Missense_Mutation 100 0.4 0 TCGA-HU-A4GD-01 APC chr5 112846180 112840176 - TGTGTCTTTATAGCAGCATGATTTATACTCATTT 1 0.673863907556593 1 DEL 1 Missense_Mutation 55 0.327272727272727 0 TCGA-HU-A4GD-01 PCLO chr7 82763061 82758683 C T 1 0.92162882796804 1 DEL 1 Missense_Mutation 89 0.629213483146067 0 TCGA-HU-A4GD-01 TP53 chr17 7678754 7674947 A T 1 0.822966634197867 1 DEL 1 Missense_Mutation 39 0.58974358974359 0 TCGA-HU-A4GD-01 PEG3 chr19 56827783 56817799 G A 1 0.832374294542433 1 DEL 1 Missense_Mutation 34 0.647058823529412 0 TCGA-VQ-A8PD-01 FLG chr1 152318892 152313786 C G 0.56 0.416013279612347 0.737554961276783 DEL 0 Nonsense_Mutation 482 0.0892116182572614 1 TCGA-VQ-A8PD-01 TTN chr2 178560487 178560059 T A 0.55 0.234904564776694 0.956174918308353 DEL 0 Nonsense_Mutation 57 0.087719298245614 1 TCGA-VQ-A8PD-01 TTN chr2 178568885 178560286 G A 0.45 0.192940501467694 0.902076147248378 DEL 0 Nonsense_Mutation 70 0.0714285714285714 1 TCGA-VQ-A8PD-01 TTN chr2 178739060 178729377 T C 0.57 0.320330276541828 0.920420586354597 DEL 0 Nonsense_Mutation 121 0.0909090909090909 1 TCGA-VQ-A8PD-01 SYNE1 chr6 152337330 152334237 C T 0.54 0.287138614022649 0.917822795238197 DEL 0 Nonsense_Mutation 104 0.0865384615384615 1 TCGA-VQ-A8PD-01 PLXNA4 chr7 132156059 132148632 T A 0.71 0.35297486744352 0.977693308551525 DEL 0 Nonsense_Mutation 71 0.112676056338028 1 TCGA-VQ-A8PD-01 TP53 chr17 7676372 7676076 G - 0.35 0.147733327085479 0.757120127926117 DEL 0 Nonsense_Mutation 91 0.0549450549450549 1 TCGA-VQ-A91N-01 FLG chr1 152312932 152306581 G T 1 0.970828834694156 1 DEL 1 Missense_Mutation 515 0.300970873786408 0 TCGA-VQ-A91N-01 RYR2 chr1 237595633 237595506 G A 1 0.643275438047549 1 DEL 1 Missense_Mutation 16 0.5 0 TCGA-VQ-A91N-01 LRP1B chr2 140509752 140501705 G T 1 0.833293549167818 1 DEL 1 Missense_Mutation 69 0.36231884057971 0 TCGA-VQ-A91N-01 DNAH5 chr5 13773105 13769535 T C 1 0.574549330568749 1 DEL 1 Missense_Mutation 168 0.0952380952380952 0 TCGA-VQ-A91N-01 SYNE1 chr6 152453653 152453630 G T 1 0.918652153641551 1 DEL 1 Missense_Mutation 162 0.314814814814815 0 TCGA-VQ-A91N-01 PREX2 chr8 68232885 68224581 C T 1 0.790762419095676 1 DEL 1 Missense_Mutation 30 0.533333333333333 0 TCGA-VQ-A91N-01 DNAH3 chr16 21037194 21034021 G C 1 0.709763413168801 1 DEL 1 Missense_Mutation 29 0.379310344827586 0 TCGA-VQ-A91N-01 TP53 chr17 7678072 7673740 C - 1 0.874366655337205 1 DEL 0 Silent 42 0.666666666666667 0 TCGA-VQ-A91N-01 DSEL chr18 67516220 67511350 C A 1 0.912049015809026 1 DEL 1 Missense_Mutation 111 0.396396396396396 0 TCGA-CD-8528-01 FLG chr1 152310314 152304946 T A 1 0.827392868319548 1 DEL 1 Missense_Mutation 609 0.144499178981938 0 TCGA-CD-8528-01 FLG chr1 152319460 152313057 C T 1 0.968817296295121 1 DEL 1 Missense_Mutation 363 0.413223140495868 0 TCGA-CD-8528-01 TTN chr2 178555630 178553186 T C 0.38 0.176627137420608 0.781378156222563 DEL 0 Nonsense_Mutation 85 0.0705882352941176 1 TCGA-CD-8528-01 CSMD3 chr8 112409197 112406727 G T 0.8 0.346165542626541 0.984659009772292 DEL 1 Missense_Mutation 41 0.146341463414634 0 TCGA-CD-8528-01 ABCC9 chr12 21856166 21848159 C T 0.68 0.253700467589348 0.978060684709826 DEL 1 Missense_Mutation 32 0.125 0 TCGA-CD-8528-01 TP53 chr17 7677499 7675161 G T 1 0.761758660836062 1 DEL 1 Missense_Mutation 20 0.7 0 TCGA-CD-8528-01 DSEL chr18 67518761 67514442 A G 1 0.669891835266094 1 DEL 1 Missense_Mutation 48 0.3125 0 TCGA-BR-4188-01 ARID1A chr1 26787095 26780007 - C 1 0.777761745656466 1 DEL 1 Missense_Mutation 70 0.314285714285714 0 TCGA-BR-4188-01 TTN chr2 178574375 178565010 G A 1 0.733793926666653 1 DEL 1 Missense_Mutation 93 0.268817204301075 0 TCGA-BR-4188-01 CTNNB1 chr3 41236997 41235763 G A 0.76 0.439473021858804 0.980428390836712 DEL 1 Missense_Mutation 98 0.13265306122449 0 TCGA-BR-4188-01 PCDH10 chr4 133159311 133151525 G A 1 0.583572421716644 1 DEL 1 Missense_Mutation 40 0.25 0 TCGA-BR-4188-01 DNAH5 chr5 13781571 13776480 A G 1 0.686054259313018 1 DEL 1 Missense_Mutation 151 0.185430463576159 0 TCGA-BR-4188-01 FAT2 chr5 151545883 151542945 G A 1 0.604719012619844 1 DEL 1 Missense_Mutation 60 0.216666666666667 0 TCGA-BR-4188-01 FAT2 chr5 151552254 151549334 G A 1 0.496286859591114 1 DEL 1 Missense_Mutation 20 0.3 0 TCGA-BR-4188-01 CSMD3 chr8 112561236 112552636 C T 0.87 0.392367953439956 0.987711227086675 DEL 1 Missense_Mutation 46 0.152173913043478 0 TCGA-BR-4188-01 CDH1 chr16 68818528 68808796 G A 0.83 0.38097037604233 0.986401516952139 DEL 1 Missense_Mutation 48 0.145833333333333 0 TCGA-VQ-A8E7-01 SPTA1 chr1 158651675 158644373 T A 0.86 0.554994902578884 0.98910133146447 DEL 1 Missense_Mutation 75 0.253333333333333 0 TCGA-VQ-A8E7-01 ERBB4 chr2 211571331 211561997 A C 1 0.918189330565492 1 DEL 1 Missense_Mutation 73 0.698630136986301 0 TCGA-VQ-A8E7-01 FAT2 chr5 151573489 151566050 C T 1 0.638413247420841 1 DEL 1 Missense_Mutation 20 0.5 0 TCGA-VQ-A8E7-01 TAF1L chr9 32631307 32631153 G A 1 0.842369264185193 1 DEL 1 Missense_Mutation 195 0.338461538461538 0 TCGA-VQ-A8E7-01 TMEM132D chr12 129705868 129700142 C A 1 0.790109808558255 1 DEL 1 Missense_Mutation 44 0.5 0 TCGA-VQ-A8E7-01 SACS chr13 23362667 23355321 C A 1 0.776675494727786 1 DEL 1 Missense_Mutation 74 0.310810810810811 0 TCGA-VQ-A8E7-01 TP53 chr17 7681041 7674221 G A 1 0.857453142065152 1 DEL 1 Missense_Mutation 53 0.584905660377358 0 TCGA-VQ-A8E7-01 MUC16 chr19 8898273 8897644 C G 0.88 0.62493800285863 1 DEL 1 Missense_Mutation 166 0.198795180722892 0 TCGA-VQ-A8E7-01 MUC16 chr19 8980731 8977799 T G 1 0.660040398549323 1 DEL 1 Missense_Mutation 79 0.253164556962025 0 TCGA-VQ-AA69-01 XIRP2 chr2 167252018 167243499 C A 0.98 0.701325142447968 1 DEL 1 Missense_Mutation 74 0.418918918918919 0 TCGA-VQ-AA69-01 CTNNB1 chr3 41225903 41224606 G T 1 0.720852800896661 1 DEL 1 Missense_Mutation 30 0.566666666666667 0 TCGA-VQ-AA69-01 PIK3CA chr3 179221372 179218303 G A 1 0.718036247454213 1 DEL 1 Missense_Mutation 48 0.479166666666667 0 TCGA-VQ-AA69-01 FAT2 chr5 151544064 151542486 C T 1 0.816172906730995 1 DEL 1 Missense_Mutation 149 0.442953020134228 0 TCGA-VQ-AA69-01 LAMA1 chr18 6972859 6966263 C T 0.94 0.505660964322387 1 DEL 1 Missense_Mutation 25 0.4 0 TCGA-BR-8060-01 USH2A chr1 215897341 215888970 T G 1 0.769812808522799 1 DEL 1 Missense_Mutation 105 0.276190476190476 0 TCGA-BR-8060-01 OBSCN chr1 228302080 228294172 G C 0.69 0.501804978205255 0.914230205463753 DEL 0 Nonsense_Mutation 366 0.101092896174863 1 TCGA-BR-8060-01 NCKAP5 chr2 132787648 132783767 A G 0.85 0.444770649358153 0.987586823078143 DEL 1 Missense_Mutation 57 0.175438596491228 0 TCGA-BR-8060-01 NCKAP5 chr2 132791369 132784393 C A 1 0.96896870092065 1 DEL 1 Missense_Mutation 334 0.48502994011976 0 TCGA-BR-8060-01 TTN chr2 178783830 178782280 T G 1 0.735724342706537 1 DEL 1 Missense_Mutation 148 0.22972972972973 0 TCGA-BR-8060-01 PCDH10 chr4 133155768 133151147 A T 0.82 0.59529863579936 0.982410618209571 DEL 1 Missense_Mutation 212 0.169811320754717 0 TCGA-BR-8060-01 DNAH5 chr5 13743346 13735196 A C 1 0.655704820669196 1 DEL 1 Missense_Mutation 157 0.140127388535032 0 TCGA-BR-8060-01 ADGRB3 chr6 69356812 69354241 T A 0.33 0.170439254114895 0.591470576357736 DEL 0 Nonsense_Mutation 133 0.0676691729323308 1 TCGA-BR-8060-01 RIMS1 chr6 72405244 72399014 A G 1 0.806469708925789 1 DEL 1 Missense_Mutation 71 0.366197183098592 0 TCGA-BR-8060-01 MUC17 chr7 101040432 101039050 C T 1 0.980696412831771 1 DEL 1 Missense_Mutation 609 0.467980295566502 0 TCGA-BR-8060-01 RIMS2 chr8 103931048 103921782 T G 0.91 0.474536959745161 1 DEL 1 Missense_Mutation 42 0.238095238095238 0 TCGA-BR-8060-01 FAT3 chr11 92802173 92798478 A G 1 0.590685521116213 1 DEL 1 Missense_Mutation 18 0.5 0 TCGA-BR-8060-01 DNAH17 chr17 78465164 78459108 A T 1 0.973633107136311 1 DEL 1 Missense_Mutation 461 0.459869848156182 0 TCGA-BR-8060-01 MUC16 chr19 8984268 8975715 T G 1 0.849952401737011 1 DEL 1 Missense_Mutation 87 0.425287356321839 0 TCGA-FP-7735-01 FLG chr1 152320133 152313536 G T 1 0.676083014277176 1 DEL 1 Missense_Mutation 364 0.0824175824175824 0 TCGA-FP-7735-01 HMCN1 chr1 186194653 186189628 G A 1 0.819123183424001 1 DEL 1 Missense_Mutation 67 0.313432835820896 0 TCGA-FP-7735-01 TP53 chr17 7675175 7675095 C T 1 0.80717234162035 1 DEL 1 Missense_Mutation 43 0.441860465116279 0 TCGA-FP-7735-01 DSEL chr18 67523167 67513190 G T 0.64 0.304797982981657 0.969301509642687 DEL 1 Missense_Mutation 94 0.074468085106383 0 TCGA-CG-4475-01 FLG chr1 152318350 152311396 T G 0.46 0.375422861336218 0.560626548448083 DEL 0 Nonsense_Mutation 1171 0.0768573868488471 1 TCGA-CG-4475-01 NRXN1 chr2 50498637 50497438 G T 1 0.742329198489618 1 DEL 1 Missense_Mutation 138 0.188405797101449 0 TCGA-CG-4475-01 CSMD3 chr8 113175574 113173814 G A 0.48 0.319341402637006 0.702255495598851 DEL 0 Nonsense_Mutation 337 0.0682492581602374 1 TCGA-CG-5719-01 RYR2 chr1 237642020 237633636 G A 1 0.783281022960536 1 DEL 1 Missense_Mutation 321 0.218068535825545 0 TCGA-CG-5719-01 PCDH15 chr10 53997208 53995732 G A 1 0.786028381352837 1 DEL 1 Missense_Mutation 155 0.258064516129032 0 TCGA-CG-5719-01 SACS chr13 23355411 23354534 G A 0.31 0.150347261508345 0.609893863726232 DEL 0 Nonsense_Mutation 104 0.0673076923076923 1 TCGA-CG-5719-01 SMAD4 chr18 51070013 51065549 G A 0.54 0.321837525536211 0.84628720538654 DEL 0 Nonsense_Mutation 121 0.115702479338843 1 TCGA-CG-5719-01 MUC16 chr19 8857101 8849018 G A 1 0.520422657328092 1 DEL 1 Missense_Mutation 36 0.25 0 TCGA-BR-A4IY-01 NRXN1 chr2 50560432 50553019 A T 1 0.880169358219157 1 DEL 1 Missense_Mutation 126 0.325396825396825 0 TCGA-BR-A4IY-01 TTN chr2 178587765 178579665 T C 1 0.630544985532409 1 DEL 1 Missense_Mutation 80 0.2 0 TCGA-BR-A4IY-01 DNAH7 chr2 195894607 195884781 G A 1 0.523706873324654 1 DEL 1 Missense_Mutation 44 0.204545454545455 0 TCGA-BR-A4IY-01 DNAH5 chr5 13944495 13944399 C T 0.84 0.405551757398695 0.987106437738412 DEL 1 Missense_Mutation 56 0.142857142857143 0 TCGA-BR-A4IY-01 MUC17 chr7 101037562 101032177 G A 1 0.789143754186417 1 DEL 1 Missense_Mutation 246 0.17479674796748 0 TCGA-BR-A4IY-01 PLXNA4 chr7 132511948 132508446 G A 1 0.557192960642444 1 DEL 1 Missense_Mutation 96 0.135416666666667 0 TCGA-BR-A4IY-01 CSMD1 chr8 3114432 3110280 A C 1 0.380367623463076 1 DEL 1 Missense_Mutation 23 0.217391304347826 0 TCGA-BR-A4IY-01 TP53 chr17 7680332 7675088 C T 1 0.789094345770787 1 DEL 1 Missense_Mutation 73 0.315068493150685 0 TCGA-BR-8381-01 ARID1A chr1 26783303 26780689 C A 0.54 0.315882994237802 0.87084349007013 DEL 0 Nonsense_Mutation 164 0.0792682926829268 1 TCGA-BR-8381-01 USH2A chr1 215797012 215790195 CATTTTACTGGCACCGGGTCATTCTTTT - 0.83 0.526565836637035 0.986652264919048 DEL 1 Missense_Mutation 213 0.0938967136150235 0 TCGA-BR-8381-01 UTRN chr6 144803034 144797944 C A 0.82 0.467546651094693 0.986346340855578 DEL 1 Missense_Mutation 108 0.12037037037037 0 TCGA-BR-8381-01 FAT3 chr11 92803732 92801763 T A 0.36 0.162448219156898 0.735208067901609 DEL 0 Nonsense_Mutation 115 0.0521739130434783 1 TCGA-BR-8381-01 ABCC9 chr12 21918880 21917026 T G 0.72 0.473053900661909 0.967006410104748 DEL 0 Nonsense_Mutation 198 0.106060606060606 1 TCGA-BR-8381-01 LRRK2 chr12 40233179 40232347 A T 0.6 0.30284904961095 0.95519165042109 DEL 0 Nonsense_Mutation 91 0.0879120879120879 1 TCGA-BR-8381-01 DNAH9 chr17 11689598 11679829 C A 0.41 0.223306233958123 0.729466197481658 DEL 0 Nonsense_Mutation 165 0.0606060606060606 1 TCGA-CD-A48A-01 FLG chr1 152315951 152307334 G A 0.89 0.712165575178672 1 DEL 1 Missense_Mutation 551 0.137931034482759 0 TCGA-CD-A48A-01 SPTA1 chr1 158661242 158652555 T C 1 0.66807616665487 1 DEL 1 Missense_Mutation 118 0.177966101694915 0 TCGA-CD-A48A-01 NCKAP5 chr2 132787574 132782995 T G 1 0.939079343819964 1 DEL 1 Missense_Mutation 90 0.722222222222222 0 TCGA-CD-A48A-01 TTN chr2 178538671 178536054 C T 1 0.887043707175491 1 DEL 1 Missense_Mutation 103 0.378640776699029 0 TCGA-CD-A48A-01 TTN chr2 178584826 178583832 C T 1 0.671685642195301 1 DEL 1 Missense_Mutation 15 0.6 0 TCGA-CD-A48A-01 TTN chr2 178621546 178617998 C T 1 0.653849432478179 1 DEL 1 Missense_Mutation 121 0.15702479338843 0 TCGA-CD-A48A-01 TTN chr2 178728597 178720488 A C 1 0.883027689268092 1 DEL 1 Missense_Mutation 95 0.389473684210526 0 TCGA-CD-A48A-01 TTN chr2 178782357 178782280 T A 1 0.898242971979766 1 DEL 1 Missense_Mutation 93 0.440860215053763 0 TCGA-CD-A48A-01 ERBB4 chr2 211395941 211387147 G T 1 0.925140130420691 1 DEL 1 Missense_Mutation 157 0.388535031847134 0 TCGA-CD-A48A-01 SCN10A chr3 38718166 38713995 C T 1 0.813594102541258 1 DEL 1 Missense_Mutation 112 0.285714285714286 0 TCGA-CD-A48A-01 PCDH10 chr4 133153526 133151947 G A 1 0.882384685713797 1 DEL 1 Missense_Mutation 35 0.857142857142857 0 TCGA-CD-A48A-01 DCHS2 chr4 154317617 154315976 T C 1 0.880660565158556 1 DEL 1 Missense_Mutation 37 0.810810810810811 0 TCGA-CD-A48A-01 FAT2 chr5 151570611 151566925 AT - 0.73 0.415467361829128 0.977074617223281 DEL 1 Missense_Mutation 90 0.133333333333333 0 TCGA-CD-A48A-01 MUC17 chr7 101047369 101040314 T G 1 0.982117106000348 1 DEL 0 Silent 519 0.545279383429672 0 TCGA-CD-A48A-01 MUC17 chr7 101045874 101042395 T G 1 0.970125917992354 1 DEL 1 Missense_Mutation 256 0.5546875 0 TCGA-CD-A48A-01 RELN chr7 103540800 103539257 T G 1 0.906983311316521 1 DEL 1 Missense_Mutation 76 0.552631578947368 0 TCGA-CD-A48A-01 TRPA1 chr8 72075186 72069123 T G 1 0.965426462219023 1 DEL 1 Missense_Mutation 252 0.496031746031746 0 TCGA-CD-A48A-01 RIMS2 chr8 103939621 103936596 A C 0.78 0.434075353008389 0.983105570343249 DEL 1 Missense_Mutation 131 0.0916030534351145 0 TCGA-CD-A48A-01 DCLK1 chr13 35949079 35947396 T G 1 0.488652102463364 1 DEL 1 Missense_Mutation 55 0.163636363636364 0 TCGA-CD-A48A-01 SLITRK5 chr13 87683532 87676130 G T 0.97 0.625215563955634 1 DEL 1 Missense_Mutation 160 0.15 0 TCGA-CD-A48A-01 DNAH9 chr17 11813533 11807893 A G 1 0.810795442474581 1 DEL 1 Missense_Mutation 26 0.730769230769231 0 TCGA-CD-A48A-01 MUC16 chr19 8971223 8962058 C A 0.53 0.349105533567681 0.770378858517786 DEL 0 Nonsense_Mutation 228 0.0964912280701754 1 TCGA-CD-A48A-01 RYR1 chr19 38472599 38466152 C T 1 0.724138346453182 1 DEL 1 Missense_Mutation 39 0.358974358974359 0 TCGA-D7-A6F2-01 PXDN chr2 1654624 1649582 G A 0.61 0.376346860277013 0.919112025571803 DEL 0 Nonsense_Mutation 188 0.0851063829787234 1 TCGA-D7-A6F2-01 LRP1B chr2 141483602 141480496 G T 0.51 0.270649478518179 0.883660234888131 DEL 0 Nonsense_Mutation 91 0.0989010989010989 1 TCGA-D7-A6F2-01 LRP2 chr2 169159457 169156306 C T 1 0.905774091345301 1 DEL 1 Missense_Mutation 94 0.5 0 TCGA-D7-A6F2-01 TTN chr2 178626629 178618243 C G 0.85 0.562954419905381 0.988170383176973 DEL 1 Missense_Mutation 140 0.164285714285714 0 TCGA-D7-A6F2-01 DOCK2 chr5 169697034 169689312 C A 1 0.446361219674095 1 DEL 1 Missense_Mutation 25 0.24 0 TCGA-D7-A6F2-01 TP53 chr17 7680186 7674252 C T 1 0.89503647083589 1 DEL 1 Missense_Mutation 48 0.75 0 TCGA-BR-8285-01 HMCN1 chr1 186010452 186007171 G A 1 0.703194708788369 1 DEL 1 Missense_Mutation 185 0.156756756756757 0 TCGA-BR-8285-01 HMCN1 chr1 186182136 186178602 C A 0.95 0.729986259188453 1 DEL 1 Missense_Mutation 460 0.134782608695652 0 TCGA-BR-8285-01 LRP2 chr2 169184930 169182316 C A 0.87 0.581414107490608 0.989808285721406 DEL 1 Missense_Mutation 202 0.123762376237624 0 TCGA-BR-8285-01 TTN chr2 178591277 178590316 A G 1 0.754718219501735 1 DEL 1 Missense_Mutation 191 0.172774869109948 0 TCGA-BR-8285-01 SCN10A chr3 38718148 38712391 C T 0.89 0.631245993790548 1 DEL 1 Missense_Mutation 268 0.126865671641791 0 TCGA-BR-8285-01 RELN chr7 103515836 103510913 G A 1 0.47139904702598 1 DEL 1 Missense_Mutation 72 0.125 0 TCGA-BR-8285-01 RIMS2 chr8 103912570 103910417 G T 1 0.719255783105926 1 DEL 1 Missense_Mutation 221 0.153846153846154 0 TCGA-IN-8462-01 FLG chr1 152312525 152311083 G T 1 0.773846563872219 1 DEL 1 Missense_Mutation 267 0.250936329588015 0 TCGA-IN-8462-01 FLG chr1 152322364 152313727 C T 0.96 0.795113982277251 1 DEL 1 Missense_Mutation 451 0.241685144124169 0 TCGA-IN-8462-01 HMCN1 chr1 186152073 186145448 G A 1 0.618259915286497 1 DEL 1 Missense_Mutation 47 0.297872340425532 0 TCGA-IN-8462-01 THSD7B chr2 137416662 137411633 G A 1 0.824831522248522 1 DEL 1 Missense_Mutation 67 0.432835820895522 0 TCGA-IN-8462-01 ERBB4 chr2 211387617 211383883 T G 0.31 0.188933728006317 0.498246762276284 DEL 0 Nonsense_Mutation 189 0.0793650793650794 1 TCGA-IN-8462-01 RIMS1 chr6 71970596 71969029 A G 0.88 0.591372686033751 1 DEL 1 Missense_Mutation 108 0.222222222222222 0 TCGA-IN-8462-01 ABCA13 chr7 48409827 48403830 C A 0.8 0.320104607707154 0.984525535087313 DEL 1 Missense_Mutation 31 0.161290322580645 0 TCGA-IN-8462-01 CSMD3 chr8 112324696 112319919 C T 1 0.693343205576713 1 DEL 1 Missense_Mutation 75 0.293333333333333 0 TCGA-IN-8462-01 ABCC9 chr12 21908086 21906235 - T 1 0.670791283495716 1 DEL 1 Missense_Mutation 33 0.393939393939394 0 TCGA-IN-8462-01 TP53 chr17 7684891 7675157 - G 0.67 0.328166438536288 0.970693209199678 DEL 1 Missense_Mutation 31 0.225806451612903 0 TCGA-IN-8462-01 SMAD4 chr18 51072884 51067023 C G 0.96 0.605591201849956 1 DEL 1 Missense_Mutation 59 0.322033898305085 0 TCGA-KB-A93J-01 FLG chr1 152308336 152306946 C A 1 0.653441186928165 1 DEL 1 Missense_Mutation 33 0.424242424242424 0 TCGA-KB-A93J-01 FLG chr1 152315964 152311179 C T 1 0.886971751543651 1 DEL 1 Missense_Mutation 333 0.369369369369369 0 TCGA-KB-A93J-01 RYR2 chr1 237797808 237792237 G A 1 0.525480359662875 1 DEL 1 Missense_Mutation 29 0.344827586206897 0 TCGA-KB-A93J-01 TP53 chr17 7677867 7676211 - CATT 1 0.879561124064752 1 DEL 1 Missense_Mutation 157 0.554140127388535 0 TCGA-KB-A93J-01 MUC16 chr19 8940492 8936064 TCAC - 0.16 0.0637871609407669 0.343757431289438 DEL 0 Nonsense_Mutation 96 0.0520833333333333 1 TCGA-KB-A93J-01 MUC16 chr19 8960418 8960223 TAGAGGAGATTTCTGTTCTGGAGGCCTGAGTAA - 1 0.677175930354954 1 DEL 1 Missense_Mutation 81 0.333333333333333 0 TCGA-KB-A93J-01 ZNF536 chr19 30453151 30443731 G A 1 0.640058571174258 1 DEL 1 Missense_Mutation 59 0.338983050847458 0 TCGA-CD-5801-01 FLG chr1 152322393 152313866 A C 1 0.763357817154654 1 DEL 1 Missense_Mutation 485 0.131958762886598 0 TCGA-CD-5801-01 SPTA1 chr1 158650761 158644285 G A 0.57 0.327684777661559 0.915549304124318 DEL 0 Nonsense_Mutation 160 0.075 1 TCGA-CD-5801-01 RYR2 chr1 237645315 237643373 T C 0.99 0.702714939894839 1 DEL 1 Missense_Mutation 307 0.130293159609121 0 TCGA-CD-5801-01 LRP1B chr2 140278194 140274510 T A 1 0.630368972441602 1 DEL 1 Missense_Mutation 219 0.105022831050228 0 TCGA-CD-5801-01 NEB chr2 151720347 151717447 A C 0.72 0.316895493342411 0.980423214278498 DEL 1 Missense_Mutation 80 0.075 0 TCGA-CD-5801-01 XIRP2 chr2 167248900 167243421 G A 1 0.805400396164201 1 DEL 1 Missense_Mutation 183 0.169398907103825 0 TCGA-CD-5801-01 TTN chr2 178632296 178625317 A C 0.89 0.673389119699228 1 DEL 1 Missense_Mutation 574 0.0923344947735192 0 TCGA-CD-5801-01 TTN chr2 178687212 178681136 - T 1 0.493629191680659 1 DEL 1 Missense_Mutation 94 0.106382978723404 0 TCGA-CD-5801-01 TTN chr2 178736065 178728118 G T 1 0.734070659946201 1 DEL 1 Missense_Mutation 71 0.225352112676056 0 TCGA-CD-5801-01 DNAH7 chr2 195818846 195817783 T G 0.9 0.483521977575036 0.989837500168736 DEL 1 Missense_Mutation 129 0.0930232558139535 0 TCGA-CD-5801-01 DNAH7 chr2 195869076 195864974 G T 1 0.84122569687064 1 DEL 1 Missense_Mutation 266 0.161654135338346 0 TCGA-CD-5801-01 ERBB4 chr2 211710948 211701975 T C 1 0.744619978995555 1 DEL 1 Missense_Mutation 301 0.119601328903654 0 TCGA-CD-5801-01 ABCA12 chr2 214981249 214975894 C T 0.75 0.462555066256189 0.977663967645892 DEL 1 Missense_Mutation 219 0.0776255707762557 0 TCGA-CD-5801-01 COL6A3 chr2 237384245 237381020 C T 1 0.61343114703417 1 DEL 1 Missense_Mutation 134 0.119402985074627 0 TCGA-CD-5801-01 PIK3CA chr3 179208280 179203765 T A 1 0.791070366244675 1 DEL 1 Missense_Mutation 233 0.145922746781116 0 TCGA-CD-5801-01 DNAH5 chr5 13773105 13769090 T G 0.72 0.548214914335031 0.919478149420617 DEL 0 Nonsense_Mutation 768 0.0677083333333333 1 TCGA-CD-5801-01 DST chr6 56573186 56569883 A C 0.87 0.592676999453661 0.989604778377561 DEL 1 Missense_Mutation 246 0.113821138211382 0 TCGA-CD-5801-01 UTRN chr6 144749546 144748482 G A 1 0.666574762030817 1 DEL 1 Missense_Mutation 98 0.173469387755102 0 TCGA-CD-5801-01 GLI3 chr7 41966620 41965888 G A 1 0.474148111656677 1 DEL 1 Missense_Mutation 93 0.0967741935483871 0 TCGA-CD-5801-01 ABCA13 chr7 48276993 48271885 T G 1 0.431760863396821 1 DEL 1 Missense_Mutation 52 0.115384615384615 0 TCGA-CD-5801-01 ABCA13 chr7 48289695 48279716 C A 1 0.63833582260617 1 DEL 1 Missense_Mutation 265 0.0943396226415094 0 TCGA-CD-5801-01 PLXNA4 chr7 132133799 132130502 T G 1 0.90489983816868 1 DEL 1 Missense_Mutation 261 0.21455938697318 0 TCGA-CD-5801-01 DNAH17 chr17 78476595 78475313 T C 0.71 0.438223429814552 0.971047791300672 DEL 0 Nonsense_Mutation 171 0.0935672514619883 1 TCGA-CD-5801-01 MUC16 chr19 8965920 8958661 C T 0.95 0.682772847917862 1 DEL 1 Missense_Mutation 372 0.110215053763441 0 TCGA-CD-5801-01 MUC16 chr19 8970700 8966112 G A 0.46 0.283749166528952 0.732370100075289 DEL 0 Nonsense_Mutation 298 0.0536912751677852 1 TCGA-CD-5801-01 MUC16 chr19 8976204 8976017 T G 0.76 0.519130361624926 0.972832983083683 DEL 1 Missense_Mutation 308 0.0876623376623377 0 TCGA-CD-5801-01 ZNF208 chr19 21977948 21974055 T C 1 0.888247218439018 1 DEL 1 Missense_Mutation 243 0.218106995884774 0 TCGA-CG-4477-01 TTN chr2 178567716 178557753 T G 0.8 0.632295373235057 0.96630684575668 DEL 0 Nonsense_Mutation 716 0.0949720670391061 1 TCGA-CG-4477-01 ABCA13 chr7 48275033 48273985 G A 0.97 0.388619518081799 0.989539253462423 DEL 1 Missense_Mutation 46 0.130434782608696 0 TCGA-CG-4477-01 RELN chr7 103487874 103482898 - C 1 0.838430217845666 1 DEL 1 Missense_Mutation 205 0.204878048780488 0 TCGA-CG-4477-01 CSMD1 chr8 3310732 3308446 C T 1 0.79042103914159 1 DEL 1 Missense_Mutation 67 0.298507462686567 0 TCGA-CG-4477-01 TAF1L chr9 32638733 32633414 TATAA - 1 0.928884956891564 1 DEL 1 Missense_Mutation 304 0.286184210526316 0 TCGA-CG-4477-01 LRRK2 chr12 40230015 40225610 - CTC 1 0.774612604382048 1 DEL 1 Missense_Mutation 79 0.253164556962025 0 TCGA-CG-4477-01 TP53 chr17 7683342 7674869 CGGCT - 1 0.71165989430873 1 DEL 1 Missense_Mutation 68 0.25 0 TCGA-BR-6565-01 APOB chr2 21016173 21015140 C G 0.46 0.240246246856594 0.825928350885488 DEL 0 Nonsense_Mutation 168 0.0535714285714286 1 TCGA-BR-6565-01 LRP1B chr2 140911454 140907999 C T 0.44 0.202624976855542 0.868701920211227 DEL 0 Nonsense_Mutation 89 0.0674157303370786 1 TCGA-BR-6565-01 PCDH10 chr4 133158547 133151210 A C 0.45 0.204910413137068 0.874621282375343 DEL 0 Nonsense_Mutation 88 0.0681818181818182 1 TCGA-BR-6565-01 APC chr5 112849506 112842204 C T 1 0.916735981275668 1 DEL 0 Silent 126 0.428571428571429 0 TCGA-BR-6565-01 FAT2 chr5 151537723 151534520 C G 0.93 0.453378786583572 1 DEL 1 Missense_Mutation 63 0.142857142857143 0 TCGA-BR-6565-01 SYNE1 chr6 152359894 152350253 A G 1 0.726276968658684 1 DEL 1 Missense_Mutation 104 0.211538461538462 0 TCGA-BR-6565-01 ABCA13 chr7 48520596 48520056 T C 0.79 0.27910370449075 0.983848381036635 DEL 1 Missense_Mutation 43 0.0930232558139535 0 TCGA-BR-6565-01 NAV3 chr12 78186958 78179543 C A 0.69 0.359394687594967 0.974864760909406 DEL 1 Missense_Mutation 98 0.0918367346938776 0 TCGA-BR-6565-01 TP53 chr17 7684139 7676050 A C 1 0.780594220307236 1 DEL 1 Missense_Mutation 61 0.327868852459016 0 TCGA-D7-6526-01 FLG chr1 152305601 152305083 G T 1 0.979156383273426 1 DEL 1 Missense_Mutation 726 0.330578512396694 0 TCGA-D7-6526-01 FLG chr1 152313821 152307352 T C 0.8 0.629854181824477 0.969693372957471 DEL 1 Missense_Mutation 701 0.0912981455064194 0 TCGA-D7-6526-01 XIRP2 chr2 166905668 166903730 A T 1 0.753336598754954 1 DEL 1 Missense_Mutation 54 0.333333333333333 0 TCGA-D7-6526-01 MAP2 chr2 209696071 209694321 C G 0.99 0.673904844973436 1 DEL 1 Missense_Mutation 181 0.171270718232044 0 TCGA-D7-6526-01 UTRN chr6 144755803 144751911 C T 0.45 0.194975744583103 0.904496155946301 DEL 0 Nonsense_Mutation 64 0.078125 1 TCGA-D7-6526-01 RP1 chr8 54631575 54627726 C T 1 0.636179552702217 1 DEL 1 Missense_Mutation 111 0.207207207207207 0 TCGA-D7-6526-01 CSMD3 chr8 112238298 112237195 A G 1 0.852731452616563 1 DEL 1 Missense_Mutation 188 0.191489361702128 0 TCGA-D7-6526-01 CSMD3 chr8 112337880 112337546 C T 1 0.622148309003407 1 DEL 1 Missense_Mutation 85 0.141176470588235 0 TCGA-D7-6526-01 PCDH15 chr10 53808867 53806688 T G 0.78 0.51759409319782 0.980606726496566 DEL 1 Missense_Mutation 163 0.134969325153374 0 TCGA-D7-6526-01 LRRK2 chr12 40341610 40335054 T G 1 0.91169529090086 1 DEL 0 Silent 81 0.555555555555556 0 TCGA-D7-6526-01 DNAH3 chr16 21069949 21069472 T A 0.79 0.440207091934206 0.984059599678735 DEL 1 Missense_Mutation 119 0.100840336134454 0 TCGA-D7-6526-01 TP53 chr17 7679669 7670676 - TCAGC 1 0.86759159077032 1 DEL 0 Silent 37 0.72972972972973 0 TCGA-D7-6526-01 EPB41L3 chr18 5498290 5489119 G A 1 0.698889042139968 1 DEL 1 Missense_Mutation 36 0.333333333333333 0 TCGA-D7-6526-01 LAMA1 chr18 7017404 7017345 C T 1 0.534419016768129 1 DEL 1 Missense_Mutation 54 0.166666666666667 0 TCGA-D7-6526-01 ZNF536 chr19 30447234 30445075 C T 1 0.97511114767128 1 DEL 0 Silent 293 0.566552901023891 0 TCGA-D7-6526-01 PEG3 chr19 56822370 56814619 T C 1 0.637270168415541 1 DEL 1 Missense_Mutation 69 0.188405797101449 0 TCGA-D7-6518-01 FMN2 chr1 240100630 240093344 C T 1 0.553940664265435 1 DEL 1 Missense_Mutation 59 0.186440677966102 0 TCGA-D7-6518-01 LRRK2 chr12 40305373 40304066 T G 0.48 0.222061461247649 0.912485793520241 DEL 0 Nonsense_Mutation 90 0.0666666666666667 1 TCGA-D7-6518-01 CDH1 chr16 68815872 68811720 A G 0.4 0.200722497606108 0.744856639809843 DEL 0 Nonsense_Mutation 126 0.0634920634920635 1 TCGA-D7-6518-01 TP53 chr17 7677831 7675089 G C 1 0.522491862019397 1 DEL 1 Missense_Mutation 66 0.166666666666667 0 TCGA-D7-6518-01 LAMA1 chr18 7083999 7080075 A T 1 0.549305555081555 1 DEL 1 Missense_Mutation 47 0.191489361702128 0 TCGA-D7-6518-01 DSEL chr18 67514851 67512927 G T 0.42 0.181442746806052 0.874905981686772 DEL 0 Nonsense_Mutation 74 0.0675675675675676 1 TCGA-VQ-A8P5-01 COL11A1 chr1 102991815 102984184 A G 0.93 0.354071363692546 0.988306470942496 DEL 1 Missense_Mutation 24 0.208333333333333 0 TCGA-VQ-A8P5-01 FLG chr1 152320172 152310765 C A 1 0.814393059718064 1 DEL 1 Missense_Mutation 564 0.184397163120567 0 TCGA-VQ-A8P5-01 HMCN1 chr1 185991661 185989519 A T 1 0.848112189422032 1 DEL 1 Missense_Mutation 79 0.417721518987342 0 TCGA-VQ-A8P5-01 FAT4 chr4 125454129 125452301 T G 1 0.727496220974384 1 DEL 1 Missense_Mutation 85 0.282352941176471 0 TCGA-VQ-A8P5-01 DOCK2 chr5 170013541 170008597 A C 1 0.893787693014671 1 DEL 1 Missense_Mutation 70 0.571428571428571 0 TCGA-VQ-A8P5-01 DST chr6 56577523 56573010 T C 1 0.577395586556093 1 DEL 1 Missense_Mutation 27 0.296296296296296 0 TCGA-VQ-A8P5-01 RIMS1 chr6 72251377 72248020 A C 1 0.843469304619578 1 DEL 1 Missense_Mutation 67 0.447761194029851 0 TCGA-VQ-A8P5-01 ABCA13 chr7 48281083 48272346 T G 0.96 0.665383071304689 1 DEL 1 Missense_Mutation 181 0.176795580110497 0 TCGA-VQ-A8P5-01 RP1 chr8 54635351 54630324 G C 0.65 0.323526246947635 0.968982508305235 DEL 1 Missense_Mutation 117 0.0683760683760684 0 TCGA-VQ-A8P5-01 PREX2 chr8 68024791 68017852 T G 0.94 0.384846326472573 0.989001349355432 DEL 1 Missense_Mutation 35 0.171428571428571 0 TCGA-VQ-A8P5-01 CSMD3 chr8 112495334 112492514 C G 1 0.957873825378043 1 DEL 0 Silent 135 0.681481481481481 0 TCGA-VQ-A8P5-01 CSMD3 chr8 113106743 113098905 A C 0.64 0.323011070536229 0.968289773881524 DEL 1 Missense_Mutation 105 0.0761904761904762 0 TCGA-VQ-A8P5-01 TRPS1 chr8 115416806 115415021 T A 1 0.954269113780683 1 DEL 0 Silent 228 0.425438596491228 0 TCGA-VQ-A8P5-01 TLR4 chr9 117718066 117712711 T G 1 0.852235888445946 1 DEL 1 Missense_Mutation 82 0.390243902439024 0 TCGA-VQ-A8P5-01 PCDH15 chr10 54026373 54023145 T G 0.74 0.367413887217486 0.980709036585289 DEL 1 Missense_Mutation 59 0.135593220338983 0 TCGA-VQ-A8P5-01 DNAH9 chr17 11786727 11784403 C T 1 0.93157696656396 1 DEL 1 Missense_Mutation 147 0.489795918367347 0 TCGA-VQ-A8P5-01 EPB41L3 chr18 5421683 5419801 C G 1 0.545594117330506 1 DEL 1 Missense_Mutation 62 0.193548387096774 0 TCGA-VQ-A8P5-01 SMAD4 chr18 51058575 51048839 C T 0.95 0.508963846569509 1 DEL 1 Missense_Mutation 40 0.275 0 TCGA-BR-7715-01 TTN chr2 178614239 178605240 C A 1 0.475637592897276 1 DEL 1 Missense_Mutation 20 0.25 0 TCGA-BR-7715-01 DNAH7 chr2 195995820 195988226 T G 1 0.911408436635494 1 DEL 0 Silent 79 0.544303797468354 0 TCGA-BR-7715-01 COL6A3 chr2 237404390 237394776 C T 0.68 0.385737164751127 0.96876165737737 DEL 1 Missense_Mutation 169 0.0710059171597633 0 TCGA-BR-7715-01 SYNE1 chr6 152357075 152350309 T G 1 0.862322093534225 1 DEL 1 Missense_Mutation 119 0.277310924369748 0 TCGA-BR-7715-01 SDK1 chr7 4085022 4077142 G T 0.99 0.498516187349463 1 DEL 1 Missense_Mutation 118 0.0932203389830508 0 TCGA-BR-7715-01 RELN chr7 103490782 103490696 T C 1 0.942247169352164 1 DEL 1 Missense_Mutation 238 0.327731092436975 0 TCGA-BR-7715-01 RIMS2 chr8 103915328 103910459 A G 1 0.878433345950582 1 DEL 1 Missense_Mutation 129 0.271317829457364 0 TCGA-BR-7715-01 CUBN chr10 16986151 16984239 T C 1 0.471471954435973 1 DEL 1 Missense_Mutation 69 0.115942028985507 0 TCGA-BR-7715-01 TP53 chr17 7678524 7673811 A G 1 0.672960112124101 1 DEL 0 Silent 13 0.692307692307692 0 TCGA-BR-7715-01 DCC chr18 53495849 53486899 G A 1 0.931606044291629 1 DEL 1 Missense_Mutation 199 0.366834170854271 0 TCGA-VQ-A94R-01 FLG chr1 152319395 152310271 T C 1 0.953883149374718 1 DEL 0 Silent 375 0.402666666666667 0 TCGA-VQ-A94R-01 HMCN1 chr1 186195835 186189762 C T 1 0.695178296332787 1 DEL 1 Missense_Mutation 70 0.3 0 TCGA-VQ-A94R-01 OBSCN chr1 228282937 228280766 G A 1 0.492437253769232 1 DEL 1 Missense_Mutation 35 0.257142857142857 0 TCGA-VQ-A94R-01 RYR2 chr1 237708296 237700458 G A 1 0.28841110360298 0.988529946316888 DEL 1 Missense_Mutation 11 0.272727272727273 0 TCGA-VQ-A94R-01 TTN chr2 178597532 178591157 T C 1 0.687794692189324 1 DEL 1 Missense_Mutation 83 0.337349397590361 0 TCGA-VQ-A94R-01 ABCA12 chr2 214977775 214975945 G A 0.66 0.410108151998661 0.943723753096131 DEL 0 Nonsense_Mutation 68 0.220588235294118 1 TCGA-VQ-A94R-01 ABCA12 chr2 214980907 214980643 G A 0.85 0.518433001238048 0.988011625029197 DEL 1 Missense_Mutation 53 0.283018867924528 0 TCGA-VQ-A94R-01 ABCA12 chr2 214998164 214990728 A C 1 0.726657277423363 1 DEL 1 Missense_Mutation 57 0.403508771929825 0 TCGA-VQ-A94R-01 COL6A3 chr2 237341194 237340907 G A 0.64 0.381742855340497 0.938873454344391 DEL 0 Nonsense_Mutation 61 0.213114754098361 1 TCGA-VQ-A94R-01 SCN10A chr3 38704239 38697893 C G 0.67 0.401574569530605 0.9560412077148 DEL 0 Nonsense_Mutation 58 0.224137931034483 1 TCGA-VQ-A94R-01 SCN10A chr3 38795921 38793892 T G 0.61 0.370159001440692 0.909445790342776 DEL 0 Nonsense_Mutation 69 0.202898550724638 1 TCGA-VQ-A94R-01 RIMS1 chr6 72187851 72179726 A T 0.29 0.149971690988297 0.519989248251094 DEL 0 Nonsense_Mutation 125 0.072 1 TCGA-VQ-A94R-01 MUC17 chr7 101039802 101031999 A C 1 0.951468011110263 1 DEL 1 Missense_Mutation 267 0.453183520599251 0 TCGA-VQ-A94R-01 CSMD1 chr8 2967990 2966731 T G 1 0.436735274846165 1 DEL 1 Missense_Mutation 28 0.25 0 TCGA-VQ-A94R-01 RIMS2 chr8 104258935 104251707 T A 0.99 0.690443395004932 1 DEL 1 Missense_Mutation 133 0.24812030075188 0 TCGA-VQ-A94R-01 TAF1L chr9 32632736 32631936 C T 1 0.935206354466151 1 DEL 1 Missense_Mutation 121 0.628099173553719 0 TCGA-VQ-A94R-01 TMEM132D chr12 129079805 129074584 T G 1 0.760759822858043 1 DEL 1 Missense_Mutation 65 0.415384615384615 0 TCGA-VQ-A94R-01 AHNAK2 chr14 104946559 104942502 T G 1 0.920244543914151 1 DEL 1 Missense_Mutation 528 0.299242424242424 0 TCGA-VQ-A94R-01 DNAH17 chr17 78452555 78451626 C T 0.75 0.56771864068355 0.941461615184216 DEL 0 Nonsense_Mutation 246 0.186991869918699 1 TCGA-VQ-A94R-01 LAMA1 chr18 7019699 7010352 C T 1 0.858345124137008 1 DEL 1 Missense_Mutation 39 0.717948717948718 0 TCGA-BR-A4J8-01 ARID1A chr1 26765098 26761414 CACCTCGGCCACCCAGTGG - 1 0.80483836986669 1 DEL 1 Missense_Mutation 80 0.3125 0 TCGA-BR-A4J8-01 ERBB4 chr2 211716141 211712100 G T 0.75 0.368429822068512 0.981304859011929 DEL 0 Nonsense_Mutation 66 0.121212121212121 1 TCGA-BR-A4J8-01 DST chr6 56535527 56527632 G A 1 0.488040064721192 1 DEL 1 Missense_Mutation 30 0.266666666666667 0 TCGA-BR-A4J8-01 TP53 chr17 7681882 7674949 - A 1 0.845968431549882 1 DEL 1 Missense_Mutation 49 0.530612244897959 0 TCGA-RD-A8N9-01 SPTA1 chr1 158673245 158667995 T G 1 0.696853088585213 1 DEL 1 Missense_Mutation 215 0.158139534883721 0 TCGA-RD-A8N9-01 CTNND2 chr5 11738522 11732171 T C 1 0.815389664439984 1 DEL 1 Missense_Mutation 113 0.265486725663717 0 TCGA-RD-A8N9-01 CMYA5 chr5 79737790 79734816 A C 1 0.677775706389592 1 DEL 1 Missense_Mutation 55 0.272727272727273 0 TCGA-RD-A8N9-01 PKHD1 chr6 51669441 51659513 A C 1 0.650260594606133 1 DEL 1 Missense_Mutation 46 0.260869565217391 0 TCGA-RD-A8N9-01 MUC17 chr7 101045215 101042728 G A 1 0.677192855322256 1 DEL 1 Missense_Mutation 91 0.21978021978022 0 TCGA-RD-A8N9-01 NBEA chr13 35671333 35670920 G C 1 0.500410476506677 1 DEL 1 Missense_Mutation 11 0.454545454545455 0 TCGA-RD-A8N9-01 TP53 chr17 7680632 7673601 G - 1 0.602252895893682 1 DEL 1 Missense_Mutation 35 0.285714285714286 0 TCGA-CG-5727-01 COL11A1 chr1 102927494 102921525 C T 0.89 0.607297624073764 1 DEL 1 Missense_Mutation 164 0.170731707317073 0 TCGA-CG-5727-01 TTN chr2 178724372 178717104 C G 0.86 0.512336658671958 0.988979430616905 DEL 1 Missense_Mutation 90 0.166666666666667 0 TCGA-CG-5727-01 DNAH7 chr2 196015534 196012799 G C 0.92 0.652200322565169 1 DEL 1 Missense_Mutation 191 0.178010471204188 0 TCGA-CG-5727-01 CTNNB1 chr3 41233013 41224622 C G 1 0.787410639858846 1 DEL 1 Missense_Mutation 62 0.338709677419355 0 TCGA-CG-5727-01 FAT4 chr4 125460615 125451055 C A 1 0.950368479083517 1 DEL 1 Missense_Mutation 222 0.45045045045045 0 TCGA-CG-5727-01 FAT2 chr5 151517326 151512321 C T 0.84 0.568536484842953 0.98735394974671 DEL 1 Missense_Mutation 154 0.162337662337662 0 TCGA-CG-5727-01 DST chr6 56606740 56597822 T C 1 0.923489376247899 1 DEL 1 Missense_Mutation 227 0.348017621145374 0 TCGA-CG-5727-01 COL12A1 chr6 75094233 75087655 G A 1 0.932525165501487 1 DEL 1 Missense_Mutation 153 0.464052287581699 0 TCGA-CG-5727-01 CSMD3 chr8 112387938 112380406 T G 1 0.868022260903238 1 DEL 1 Missense_Mutation 368 0.160326086956522 0 TCGA-CG-5727-01 PCDH15 chr10 53908579 53903350 T C 0.78 0.513288997681929 0.980665860788108 DEL 1 Missense_Mutation 139 0.151079136690647 0 TCGA-CG-5727-01 NAV3 chr12 78209147 78200512 G A 0.97 0.6881767705066 1 DEL 1 Missense_Mutation 242 0.15702479338843 0 TCGA-CG-5727-01 TP53 chr17 7677916 7673812 A G 1 0.764809654428178 1 DEL 1 Missense_Mutation 44 0.431818181818182 0 TCGA-BR-A4J5-01 ARID1A chr1 26735649 26731305 C T 1 0.87163823987814 1 DEL 1 Missense_Mutation 378 0.142857142857143 0 TCGA-BR-A4J5-01 FLG2 chr1 152365231 152355496 T C 1 0.780074534424647 1 DEL 1 Missense_Mutation 518 0.0926640926640927 0 TCGA-BR-A4J5-01 LRP1B chr2 140490999 140485488 C A 1 0.494209639499151 1 DEL 1 Missense_Mutation 55 0.127272727272727 0 TCGA-BR-A4J5-01 TTN chr2 178791854 178784074 G T 0.96 0.410675011840321 0.989850966117539 DEL 1 Missense_Mutation 83 0.0843373493975904 0 TCGA-BR-A4J5-01 CTNNB1 chr3 41236301 41233763 C T 0.65 0.347052435325424 0.964452502613294 DEL 0 Nonsense_Mutation 177 0.0564971751412429 1 TCGA-BR-A4J5-01 PLXNA4 chr7 132194637 132187585 T G 1 0.705039013569626 1 DEL 1 Missense_Mutation 307 0.0977198697068404 0 TCGA-BR-A4J5-01 TRPS1 chr8 115606689 115604536 C G 1 0.47250189113314 1 DEL 1 Missense_Mutation 88 0.0909090909090909 0 TCGA-BR-A4J5-01 CUBN chr10 16877796 16876917 T G 1 0.710900692219168 1 DEL 1 Missense_Mutation 70 0.2 0 TCGA-BR-A4J5-01 CDH23 chr10 71780282 71777687 C T 1 0.288763118719157 0.988980815871208 DEL 1 Missense_Mutation 28 0.107142857142857 0 TCGA-BR-A4J5-01 ZNF208 chr19 21980420 21972526 T G 1 0.473020178160828 1 DEL 1 Missense_Mutation 62 0.112903225806452 0 TCGA-IN-A7NU-01 FLG chr1 152312286 152303054 T C 1 0.624720839521372 1 DEL 1 Missense_Mutation 89 0.191011235955056 0 TCGA-IN-A7NU-01 HMCN1 chr1 186194730 186189767 A C 1 0.753794102492479 1 DEL 1 Missense_Mutation 47 0.361702127659574 0 TCGA-IN-A7NU-01 APOB chr2 21006788 21006139 A T 1 0.843958814329956 1 DEL 1 Missense_Mutation 48 0.520833333333333 0 TCGA-IN-A7NU-01 LRP1B chr2 140888141 140886170 C T 1 0.839574202428355 1 DEL 1 Missense_Mutation 52 0.480769230769231 0 TCGA-IN-A7NU-01 DST chr6 56640104 56630264 T C 1 0.920257845293756 1 DEL 1 Missense_Mutation 169 0.402366863905325 0 TCGA-IN-A7NU-01 RIMS2 chr8 103888195 103885473 A G 0.66 0.298679936441942 0.974203910015354 DEL 1 Missense_Mutation 53 0.113207547169811 0 TCGA-IN-A7NU-01 TLR4 chr9 117721840 117712634 A T 1 0.75749457136601 1 DEL 1 Missense_Mutation 74 0.283783783783784 0 TCGA-IN-A7NU-01 PCDH17 chr13 57643529 57634784 G T 1 0.538357613312883 1 DEL 1 Missense_Mutation 32 0.25 0 TCGA-IN-A7NU-01 TP53 chr17 7684979 7675161 G T 1 0.747707284783766 1 DEL 1 Missense_Mutation 49 0.36734693877551 0 TCGA-IN-AB1V-01 SDK1 chr7 4224722 4220267 G A 0.85 0.429042009120639 0.987743952789365 DEL 1 Missense_Mutation 58 0.155172413793103 0 TCGA-IN-AB1V-01 ABCA13 chr7 48526914 48520218 G A 0.65 0.243786652618001 0.975282413954375 DEL 0 Nonsense_Mutation 34 0.117647058823529 1 TCGA-IN-AB1V-01 TRPA1 chr8 72064182 72057744 T G 0.94 0.508797160192352 1 DEL 1 Missense_Mutation 70 0.171428571428571 0 TCGA-IN-AB1V-01 KIF2B chr17 53833582 53824705 G A 1 0.813124560342801 1 DEL 1 Missense_Mutation 132 0.265151515151515 0 TCGA-D7-A74A-01 COL11A1 chr1 103000207 102996023 C A 0.99 0.713038594569209 1 DEL 1 Missense_Mutation 130 0.292307692307692 0 TCGA-D7-A74A-01 FLG chr1 152305643 152304348 G A 0.99 0.836502401733006 1 DEL 1 Missense_Mutation 492 0.290650406504065 0 TCGA-D7-A74A-01 NEB chr2 151628158 151627783 G A 1 0.841395934454626 1 DEL 1 Missense_Mutation 473 0.293868921775899 0 TCGA-D7-A74A-01 FAT4 chr4 125452091 125449309 G A 0.99 0.808463515702635 1 DEL 1 Missense_Mutation 195 0.415384615384615 0 TCGA-D7-A74A-01 RIMS1 chr6 72337723 72333809 G A 1 0.607842440549405 1 DEL 1 Missense_Mutation 15 0.6 0 TCGA-D7-A74A-01 TENM4 chr11 78676999 78676325 C T 0.97 0.636453535683412 1 DEL 1 Missense_Mutation 52 0.403846153846154 0 TCGA-D7-A74A-01 SLITRK5 chr13 87685308 87677444 G C 0.87 0.604640393720995 0.989629703866178 DEL 1 Missense_Mutation 105 0.257142857142857 0 TCGA-HU-8249-01 USH2A chr1 216249189 216246806 T C 1 0.73704623563106 1 DEL 1 Missense_Mutation 260 0.176923076923077 0 TCGA-HU-8249-01 OBSCN chr1 228324147 228322023 G A 1 0.499559930858232 1 DEL 1 Missense_Mutation 29 0.241379310344828 0 TCGA-HU-8249-01 CNTNAP5 chr2 124448675 124446818 C A 0.78 0.471065677300199 0.982036013872107 DEL 1 Missense_Mutation 92 0.16304347826087 0 TCGA-HU-8249-01 TTN chr2 178600203 178592274 T G 1 0.828772086533103 1 DEL 1 Missense_Mutation 31 0.67741935483871 0 TCGA-HU-8249-01 TTN chr2 178616746 178614689 C G 1 0.567503045657486 1 DEL 1 Missense_Mutation 44 0.25 0 TCGA-HU-8249-01 MUC17 chr7 101043793 101041819 C T 1 0.862820633077983 1 DEL 1 Missense_Mutation 626 0.220447284345048 0 TCGA-HU-8249-01 DCLK1 chr13 35838622 35836085 C T 1 0.95798403168814 1 DEL 1 Missense_Mutation 352 0.321022727272727 0 TCGA-HU-8249-01 RYR1 chr19 38524019 38515053 G A 1 0.704636964562938 1 DEL 1 Missense_Mutation 67 0.283582089552239 0 TCGA-B7-A5TK-01 ARID1A chr1 26766788 26761407 GCCAC - 1 0.466743504367779 1 DEL 1 Missense_Mutation 70 0.114285714285714 0 TCGA-B7-A5TK-01 NRXN1 chr2 50242344 50236845 C T 1 0.571628757618477 1 DEL 1 Missense_Mutation 81 0.135802469135802 0 TCGA-B7-A5TK-01 CSMD3 chr8 112358620 112352463 C A 0.91 0.397230465074025 0.988707623436776 DEL 1 Missense_Mutation 81 0.0864197530864197 0 TCGA-BR-4279-01 USH2A chr1 216179005 216175407 T A 0.88 0.338945583990043 0.987116349483873 DEL 1 Missense_Mutation 33 0.151515151515152 0 TCGA-BR-4279-01 DCHS2 chr4 154337569 154329672 G A 1 0.649216053969525 1 DEL 1 Missense_Mutation 66 0.227272727272727 0 TCGA-BR-4279-01 RIMS1 chr6 72393699 72392704 A G 1 0.617753320040692 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-BR-4279-01 CDH1 chr16 68814449 68808825 A G 0.9 0.480712208142761 0.989894441884918 DEL 1 Missense_Mutation 59 0.186440677966102 0 TCGA-BR-4279-01 MUC16 chr19 8979424 8979077 A G 1 0.598309646229772 1 DEL 1 Missense_Mutation 104 0.173076923076923 0 TCGA-VQ-AA6A-01 TTN chr2 178576869 178569507 A C 1 0.690069672446715 1 DEL 1 Missense_Mutation 40 0.325 0 TCGA-VQ-AA6A-01 DOCK2 chr5 170082477 170080253 T C 1 0.758738283736931 1 DEL 1 Missense_Mutation 46 0.391304347826087 0 TCGA-VQ-AA6A-01 MUC17 chr7 101042957 101039971 C A 1 0.837904258473984 1 DEL 1 Missense_Mutation 935 0.079144385026738 0 TCGA-VQ-AA6A-01 CSMD3 chr8 112655862 112650199 T G 0.91 0.578140380119888 1 DEL 1 Missense_Mutation 138 0.152173913043478 0 TCGA-VQ-AA6A-01 GRM5 chr11 88572948 88567177 C T 1 0.593101741076067 1 DEL 1 Missense_Mutation 95 0.157894736842105 0 TCGA-VQ-AA6A-01 TP53 chr17 7681783 7674872 T C 1 0.88090517985198 1 DEL 0 Silent 33 0.878787878787879 0 TCGA-VQ-AA6A-01 LAMA1 chr18 6975791 6971898 - AGTAGTTAAGGTAGGCAGAACCTTAAAGG 1 0.930764618484132 1 DEL 0 Silent 322 0.208074534161491 0 TCGA-VQ-AA6A-01 MUC16 chr19 8956551 8955244 G A 1 0.669009840301777 1 DEL 1 Missense_Mutation 92 0.228260869565217 0 TCGA-VQ-AA6A-01 PTPRT chr20 42163869 42161389 T G 1 0.587440753063414 1 DEL 1 Missense_Mutation 110 0.127272727272727 0 TCGA-BR-6456-01 ARID1A chr1 26778995 26774775 T - 1 0.728040781900486 1 DEL 1 Missense_Mutation 94 0.191489361702128 0 TCGA-BR-6456-01 PXDN chr2 1642508 1639371 C G 1 0.638360780366886 1 DEL 1 Missense_Mutation 59 0.186440677966102 0 TCGA-BR-6456-01 ADGRV1 chr5 90651552 90642709 C T 1 0.87946906100895 1 DEL 1 Missense_Mutation 184 0.228260869565217 0 TCGA-BR-6456-01 DYNC2H1 chr11 103399777 103399750 A T 1 0.886011876228553 1 DEL 0 Silent 99 0.353535353535354 0 TCGA-BR-6456-01 LRRK2 chr12 40281346 40277987 T C 1 0.491106603982114 1 DEL 1 Missense_Mutation 75 0.12 0 TCGA-BR-6456-01 TP53 chr17 7675121 7674953 T C 1 0.620795743487172 1 DEL 1 Missense_Mutation 35 0.257142857142857 0 TCGA-RD-A8MW-01 OBSCN chr1 228296597 228294898 G T 1 0.880064248200964 1 DEL 1 Missense_Mutation 146 0.315068493150685 0 TCGA-RD-A8MW-01 THSD7B chr2 137458896 137450877 C G 0.49 0.165655526927187 0.954419643282408 DEL 0 Nonsense_Mutation 37 0.0810810810810811 1 TCGA-RD-A8MW-01 FAT4 chr4 125418510 125415414 A C 0.8 0.422292996343881 0.984991638494896 DEL 1 Missense_Mutation 75 0.133333333333333 0 TCGA-RD-A8MW-01 PLXNA4 chr7 132156404 132148601 T - 0.58 0.326864452830628 0.928215893899241 DEL 0 Nonsense_Mutation 113 0.0973451327433628 1 TCGA-RD-A8MW-01 LRRK2 chr12 40327226 40322166 C T 0.65 0.243303516679672 0.97586045258034 DEL 0 Nonsense_Mutation 43 0.0930232558139535 1 TCGA-RD-A8MW-01 NAV3 chr12 78183455 78180935 A G 0.6 0.253173318808789 0.96684027711928 DEL 0 Nonsense_Mutation 50 0.1 1 TCGA-RD-A8MW-01 TP53 chr17 7675084 7674252 C T 1 0.601336339612028 1 DEL 1 Missense_Mutation 55 0.218181818181818 0 TCGA-RD-A8MW-01 DNAH17 chr17 78508356 78501304 C T 1 0.665957476972863 1 DEL 1 Missense_Mutation 47 0.276595744680851 0 TCGA-BR-A4PF-01 HMCN1 chr1 186119618 186112821 C T 1 0.573361448492719 1 DEL 1 Missense_Mutation 51 0.215686274509804 0 TCGA-BR-A4PF-01 LRP1B chr2 140481591 140475279 C T 1 0.595005873445663 1 DEL 1 Missense_Mutation 63 0.206349206349206 0 TCGA-BR-A4PF-01 TTN chr2 178788493 178779099 C T 1 0.430174549951498 1 DEL 1 Missense_Mutation 30 0.2 0 TCGA-BR-A4PF-01 FAT2 chr5 151567419 151566284 C T 1 0.792031514478598 1 DEL 1 Missense_Mutation 77 0.311688311688312 0 TCGA-BR-A4PF-01 PCLO chr7 82971553 82966090 - T 1 0.770497109360348 1 DEL 1 Missense_Mutation 241 0.190871369294606 0 TCGA-BR-A4PF-01 DYNC2H1 chr11 103137284 103135761 G A 1 0.540764122815809 1 DEL 1 Missense_Mutation 34 0.264705882352941 0 TCGA-BR-A4PF-01 LRRK2 chr12 40371009 40367024 T G 1 0.596639887142812 1 DEL 1 Missense_Mutation 46 0.260869565217391 0 TCGA-BR-A4PF-01 TP53 chr17 7682764 7676124 G - 1 0.942367989521117 1 DEL 1 Missense_Mutation 156 0.519230769230769 0 TCGA-IN-A7NT-01 LRP1B chr2 140845570 140840951 T G 1 0.785070917712698 1 DEL 1 Missense_Mutation 87 0.275862068965517 0 TCGA-IN-A7NT-01 FAT4 chr4 125475985 125468606 T G 1 0.866216351036717 1 DEL 1 Missense_Mutation 83 0.44578313253012 0 TCGA-IN-A7NT-01 PCLO chr7 82973680 82966190 G C 1 0.656928548592066 1 DEL 1 Missense_Mutation 109 0.201834862385321 0 TCGA-IN-A7NT-01 TRPA1 chr8 72055063 72052674 T C 1 0.801803521843305 1 DEL 1 Missense_Mutation 84 0.297619047619048 0 TCGA-IN-A7NT-01 ZFHX4 chr8 76872621 76863595 A G 1 0.621820820745171 1 DEL 1 Missense_Mutation 35 0.285714285714286 0 TCGA-IN-A7NT-01 PCDH15 chr10 54068257 54066850 A T 1 0.807139999963236 1 DEL 1 Missense_Mutation 64 0.375 0 TCGA-IN-A7NT-01 NBEA chr13 35185125 35184026 G A 1 0.579127824061986 1 DEL 1 Missense_Mutation 23 0.347826086956522 0 TCGA-IN-A7NT-01 TP53 chr17 7682771 7675088 C T 1 0.82570376792875 1 DEL 1 Missense_Mutation 71 0.380281690140845 0 TCGA-HU-A4GC-01 SPTA1 chr1 158622218 158615372 C T 1 0.895331921029718 1 DEL 1 Missense_Mutation 142 0.316901408450704 0 TCGA-HU-A4GC-01 CNTNAP5 chr2 124765320 124764112 T G 1 0.600678547184132 1 DEL 1 Missense_Mutation 85 0.152941176470588 0 TCGA-HU-A4GC-01 LRP1B chr2 140846564 140840939 A C 1 0.506399855766781 1 DEL 1 Missense_Mutation 64 0.140625 0 TCGA-HU-A4GC-01 TTN chr2 178560892 178551787 C T 1 0.806768242965694 1 DEL 1 Missense_Mutation 157 0.197452229299363 0 TCGA-HU-A4GC-01 FAT4 chr4 125437189 125434280 G A 0.89 0.485064701392419 0.989734127083145 DEL 1 Missense_Mutation 97 0.123711340206186 0 TCGA-HU-A4GC-01 DNAH5 chr5 13836661 13829622 C T 1 0.918528443320908 1 DEL 1 Missense_Mutation 132 0.386363636363636 0 TCGA-HU-A4GC-01 SYNE1 chr6 152317125 152310491 T G 1 0.614924973638142 1 DEL 1 Missense_Mutation 61 0.19672131147541 0 TCGA-HU-A4GC-01 GLI3 chr7 42053425 42048664 G A 1 0.674645482160978 1 DEL 1 Missense_Mutation 58 0.224137931034483 0 TCGA-HU-A4GC-01 SACS chr13 23335871 23330983 A C 1 0.687526887254164 1 DEL 1 Missense_Mutation 113 0.176991150442478 0 TCGA-HU-A4GC-01 NBEA chr13 35676417 35667505 C T 0.98 0.614270224480968 1 DEL 1 Missense_Mutation 162 0.135802469135802 0 TCGA-BR-6563-01 FLG chr1 152304149 152303304 G A 0.65 0.418256228574381 0.932607588570393 DEL 0 Nonsense_Mutation 306 0.065359477124183 1 TCGA-BR-6563-01 FLG chr1 152320897 152311224 C T 1 0.823826743573435 1 DEL 1 Missense_Mutation 459 0.124183006535948 0 TCGA-BR-6563-01 OBSCN chr1 228213738 228211841 G A 1 0.333532834395128 1 DEL 1 Missense_Mutation 15 0.2 0 TCGA-BR-6563-01 FAT4 chr4 125497693 125491039 A C 0.86 0.405706590072769 0.987683441437279 DEL 1 Missense_Mutation 92 0.0869565217391304 0 TCGA-BR-6563-01 APC chr5 112841210 112838908 G A 1 0.791257985607622 1 DEL 1 Missense_Mutation 122 0.19672131147541 0 TCGA-BR-6563-01 MUC16 chr19 8969205 8961075 T G 0.54 0.230708256642357 0.955955927571704 DEL 0 Nonsense_Mutation 91 0.0549450549450549 1 TCGA-BR-6563-01 ZNF208 chr19 21977441 21972227 T A 1 0.404384149483884 1 DEL 1 Missense_Mutation 56 0.107142857142857 0 TCGA-CD-8533-01 RYR2 chr1 237554165 237548467 G A 0.79 0.432484849484154 0.983820921117234 DEL 1 Missense_Mutation 70 0.157142857142857 0 TCGA-CD-8533-01 LRP1B chr2 140856372 140850147 G A 0.9 0.65807788911691 1 DEL 1 Missense_Mutation 174 0.224137931034483 0 TCGA-CD-8533-01 NEB chr2 151496010 151492419 G A 0.94 0.65042450355903 1 DEL 1 Missense_Mutation 128 0.234375 0 TCGA-CD-8533-01 TTN chr2 178565013 178563549 C T 1 0.762468645301627 1 DEL 1 Missense_Mutation 217 0.253456221198157 0 TCGA-CD-8533-01 PREX2 chr8 68094909 68090582 C G 1 0.692763883571195 1 DEL 1 Missense_Mutation 86 0.27906976744186 0 TCGA-CD-8533-01 TP53 chr17 7681158 7674917 T C 1 0.925512635446717 1 DEL 1 Missense_Mutation 78 0.730769230769231 0 TCGA-MX-A666-01 FLG2 chr1 152357089 152352521 T G 0.4 0.272871332878502 0.578583638157596 DEL 0 Nonsense_Mutation 512 0.05078125 1 TCGA-MX-A666-01 APC chr5 112848361 112843329 G T 1 0.866014754661983 1 DEL 1 Missense_Mutation 105 0.352380952380952 0 TCGA-MX-A666-01 TP53 chr17 7678659 7675236 A C 1 0.786847527193885 1 DEL 1 Missense_Mutation 60 0.333333333333333 0 TCGA-MX-A666-01 MUC16 chr19 8959414 8949464 A - 1 0.862256797998073 1 DEL 1 Missense_Mutation 103 0.349514563106796 0 TCGA-VQ-A8DZ-01 SPTA1 chr1 158646258 158636756 T G 1 0.906741074932184 1 DEL 1 Missense_Mutation 107 0.429906542056075 0 TCGA-VQ-A8DZ-01 TTN chr2 178740361 178733296 A G 0.68 0.356068361308674 0.972918328092 DEL 0 Nonsense_Mutation 83 0.108433734939759 1 TCGA-VQ-A8DZ-01 PCDH10 chr4 133154706 133151800 C A 0.68 0.34339308810509 0.973952247766645 DEL 0 Nonsense_Mutation 62 0.129032258064516 1 TCGA-VQ-A8DZ-01 ABCA13 chr7 48373370 48372481 T G 0.65 0.242503997618546 0.975721025912626 DEL 1 Missense_Mutation 45 0.0888888888888889 0 TCGA-VQ-A8DZ-01 TAF1L chr9 32637910 32630402 C A 1 0.941389517788975 1 DEL 0 Silent 134 0.537313432835821 0 TCGA-VQ-A8DZ-01 TENM4 chr11 78708407 78702279 G T 1 0.71081142293636 1 DEL 1 Missense_Mutation 39 0.333333333333333 0 TCGA-VQ-A8DZ-01 TP53 chr17 7681230 7675178 A G 1 0.742893661540531 1 DEL 1 Missense_Mutation 41 0.390243902439024 0 TCGA-R5-A7ZE-01 NEB chr2 151660479 151656360 C T 0.26 0.125394639031229 0.518389081018809 DEL 0 Nonsense_Mutation 133 0.0526315789473684 1 TCGA-R5-A7ZE-01 TTN chr2 178557234 178547992 C T 1 0.679703537219755 1 DEL 1 Missense_Mutation 44 0.318181818181818 0 TCGA-R5-A7ZE-01 TTN chr2 178719923 178715236 A T 1 0.862957067656517 1 DEL 1 Missense_Mutation 73 0.452054794520548 0 TCGA-R5-A7ZE-01 MAP2 chr2 209697924 209693315 C G 0.82 0.412523633269456 0.986101545532309 DEL 1 Missense_Mutation 77 0.116883116883117 0 TCGA-R5-A7ZE-01 ABCA12 chr2 214971365 214966884 G A 1 0.825251691964186 1 DEL 1 Missense_Mutation 68 0.397058823529412 0 TCGA-R5-A7ZE-01 COL6A3 chr2 237354330 237344373 G A 0.37 0.218008352420006 0.594759990237284 DEL 0 Nonsense_Mutation 190 0.0736842105263158 1 TCGA-R5-A7ZE-01 PCLO chr7 82912971 82908877 T G 0.98 0.491593637102297 1 DEL 1 Missense_Mutation 51 0.196078431372549 0 TCGA-R5-A7ZE-01 RP1 chr8 54627961 54627672 G A 0.63 0.397377009652805 0.921911920499933 DEL 0 Nonsense_Mutation 201 0.0895522388059701 1 TCGA-R5-A7ZE-01 CSMD3 chr8 112310621 112306166 G A 0.73 0.319716551025221 0.980686958076412 DEL 1 Missense_Mutation 66 0.0909090909090909 0 TCGA-R5-A7ZE-01 PCDH15 chr10 53813675 53806961 G A 1 0.659201407140669 1 DEL 1 Missense_Mutation 97 0.195876288659794 0 TCGA-R5-A7ZE-01 TP53 chr17 7676903 7675095 C A 1 0.911524731798183 1 DEL 1 Missense_Mutation 97 0.515463917525773 0 TCGA-R5-A7ZE-01 DNAH9 chr17 11823791 11821980 A C 0.73 0.363089446344822 0.979364944949804 DEL 0 Silent 55 0.145454545454545 0 TCGA-R5-A7ZE-01 EPB41L3 chr18 5403459 5394734 T G 0.77 0.510101244013366 0.978542578302069 DEL 0 Nonsense_Mutation 171 0.128654970760234 1 TCGA-R5-A7ZE-01 LAMA1 chr18 7014703 7013976 T G 0.83 0.247686958920261 0.984308688202923 DEL 1 Missense_Mutation 18 0.166666666666667 0 TCGA-R5-A7ZE-01 DSEL chr18 67517295 67510998 C A 1 0.720591218626206 1 DEL 1 Missense_Mutation 76 0.25 0 TCGA-R5-A7ZE-01 MUC16 chr19 8957567 8949874 T C 1 0.863389991816903 1 DEL 1 Missense_Mutation 189 0.285714285714286 0 TCGA-R5-A7ZE-01 MUC16 chr19 8965458 8955739 T A 1 0.882520525558497 1 DEL 1 Missense_Mutation 183 0.311475409836066 0 TCGA-RD-A8N6-01 FLG chr1 152310391 152305050 G C 0.92 0.754147523201257 1 DEL 1 Missense_Mutation 562 0.167259786476868 0 TCGA-RD-A8N6-01 TTN chr2 178634378 178632225 C T 1 0.372266639074458 1 DEL 1 Missense_Mutation 16 0.25 0 TCGA-RD-A8N6-01 COL12A1 chr6 75097654 75091389 C T 1 0.822312082691795 1 DEL 1 Missense_Mutation 88 0.329545454545455 0 TCGA-RD-A8N6-01 RELN chr7 103707678 103697968 C T 0.68 0.471577188966803 0.931626742614994 DEL 0 Nonsense_Mutation 172 0.151162790697674 1 TCGA-RD-A8N6-01 PLXNA4 chr7 132189799 132187572 C - 0.5 0.310854148365126 0.776993898961795 DEL 0 Nonsense_Mutation 144 0.111111111111111 1 TCGA-RD-A8N6-01 FAT3 chr11 92840788 92831784 - C 1 0.499881529205721 1 DEL 1 Missense_Mutation 19 0.315789473684211 0 TCGA-RD-A8N6-01 PCDH17 chr13 57633695 57633559 C T 1 0.780371172153888 1 DEL 1 Missense_Mutation 67 0.328358208955224 0 TCGA-RD-A8N6-01 ZNF208 chr19 21973578 21973026 A T 0.7 0.33442962731376 0.977693586906245 DEL 1 Missense_Mutation 55 0.127272727272727 0 TCGA-HF-7133-01 FLG chr1 152314000 152305218 C A 1 0.945563445082317 1 DEL 1 Missense_Mutation 486 0.226337448559671 0 TCGA-HF-7133-01 PXDN chr2 1644014 1643544 G A 1 0.710195566148638 1 DEL 1 Missense_Mutation 122 0.180327868852459 0 TCGA-HF-7133-01 DST chr6 56554551 56552194 T G 1 0.814029531907577 1 DEL 1 Missense_Mutation 67 0.343283582089552 0 TCGA-HF-7133-01 SDK1 chr7 4052862 4049359 C T 1 0.698948131942386 1 DEL 1 Missense_Mutation 90 0.2 0 TCGA-HF-7133-01 ABCC9 chr12 21913265 21908190 G A 1 0.59051697578481 1 DEL 1 Missense_Mutation 37 0.243243243243243 0 TCGA-CG-4443-01 OBSCN chr1 228345938 228342180 G T 1 0.478012334222367 1 DEL 1 Missense_Mutation 12 0.416666666666667 0 TCGA-CG-4443-01 RELN chr7 103578934 103575642 T - 1 0.855408565118716 1 DEL 1 Missense_Mutation 50 0.62 0 TCGA-CG-4443-01 RELN chr7 103578113 103575663 AACCAAATGGAGGCACGTTT - 1 0.845785826505349 1 DEL 1 Missense_Mutation 54 0.574074074074074 0 TCGA-CG-4443-01 DNAH3 chr16 20966809 20965195 C T 1 0.928768183681488 1 DEL 1 Missense_Mutation 194 0.396907216494845 0 TCGA-CG-4443-01 MUC16 chr19 8986132 8981036 CAGAGTATGTTCTGTCACCACGATTGCACCTGTAGATGTCTTAGGTGACAAGGTGGCTCCTGT - 0.73 0.460225477133501 0.97020674357227 DEL 1 Missense_Mutation 65 0.246153846153846 0 TCGA-BR-8286-01 COL11A1 chr1 102895062 102889507 C - 1 0.825646114993093 1 DEL 1 Missense_Mutation 108 0.296296296296296 0 TCGA-BR-8286-01 OBSCN chr1 228292910 228287696 C T 1 0.830305014102389 1 DEL 1 Missense_Mutation 68 0.411764705882353 0 TCGA-BR-8286-01 TTN chr2 178596959 178588109 C T 1 0.751933678634777 1 DEL 1 Missense_Mutation 44 0.431818181818182 0 TCGA-BR-8286-01 ABCA12 chr2 214957290 214947496 T A 1 0.872135930067171 1 DEL 1 Missense_Mutation 42 0.714285714285714 0 TCGA-BR-8286-01 DNAH5 chr5 13721238 13717421 T G 0.61 0.294322960933949 0.961568364206788 DEL 0 Nonsense_Mutation 66 0.106060606060606 1 TCGA-BR-8286-01 PREX2 chr8 68026542 68017852 T G 1 0.73649709841662 1 DEL 1 Missense_Mutation 53 0.320754716981132 0 TCGA-BR-8286-01 CSMD3 chr8 112582452 112573615 A T 1 0.82820539773284 1 DEL 1 Missense_Mutation 97 0.381443298969072 0 TCGA-BR-8286-01 DCLK1 chr13 35801952 35793439 G C 1 0.856559750252843 1 DEL 1 Missense_Mutation 113 0.353982300884956 0 TCGA-BR-8286-01 TP53 chr17 7683989 7674230 C T 1 0.914225618513459 1 DEL 1 Missense_Mutation 82 0.621951219512195 0 TCGA-BR-8286-01 PEG3 chr19 56825632 56823637 C T 1 0.946802200063194 1 DEL 0 Silent 123 0.626016260162602 0 TCGA-D7-6524-01 ARID1A chr1 26783095 26780660 C A 1 0.828199265198481 1 DEL 1 Missense_Mutation 134 0.23134328358209 0 TCGA-D7-6524-01 SPTA1 chr1 158661329 158653353 C T 1 0.673651636836568 1 DEL 1 Missense_Mutation 123 0.154471544715447 0 TCGA-D7-6524-01 PXDN chr2 1645095 1639315 G A 1 0.433256983802326 1 DEL 1 Missense_Mutation 26 0.192307692307692 0 TCGA-D7-6524-01 LRP2 chr2 169207317 169207175 C T 1 0.710221625428748 1 DEL 1 Missense_Mutation 95 0.189473684210526 0 TCGA-D7-6524-01 CTNNB1 chr3 41227018 41224962 G A 1 0.667089142074513 1 DEL 1 Missense_Mutation 126 0.150793650793651 0 TCGA-D7-6524-01 CTNNB1 chr3 41230664 41225081 G T 1 0.761551402738706 1 DEL 1 Missense_Mutation 86 0.232558139534884 0 TCGA-D7-6524-01 PIK3CA chr3 179240841 179234359 - A 0.74 0.325113352419175 0.981846110336994 DEL 1 Missense_Mutation 66 0.0909090909090909 0 TCGA-D7-6524-01 SYNE1 chr6 152353446 152350324 G T 1 0.747314183355421 1 DEL 1 Missense_Mutation 105 0.2 0 TCGA-D7-6524-01 PCDH15 chr10 53817346 53809527 T A 0.78 0.539789719812972 0.978519970235891 DEL 1 Missense_Mutation 293 0.0955631399317406 0 TCGA-VQ-A8PE-01 COL11A1 chr1 102894284 102889477 G C 0.32 0.124968500048048 0.755309768122021 DEL 0 Nonsense_Mutation 65 0.0615384615384615 1 TCGA-VQ-A8PE-01 THSD7B chr2 137063311 137056906 C T 1 0.874250042987798 1 DEL 1 Missense_Mutation 172 0.27906976744186 0 TCGA-VQ-A8PE-01 THSD7B chr2 137644598 137642542 C T 0.79 0.384358527117266 0.984278878655015 DEL 1 Missense_Mutation 63 0.126984126984127 0 TCGA-VQ-A8PE-01 PCDH10 chr4 133163378 133163063 G A 0.99 0.525996165038197 1 DEL 1 Missense_Mutation 63 0.19047619047619 0 TCGA-VQ-A8PE-01 APC chr5 112846801 112838490 A G 1 0.439857946645082 1 DEL 1 Missense_Mutation 35 0.2 0 TCGA-VQ-A8PE-01 ZFHX4 chr8 76867721 76864274 C A 1 0.422394078521328 1 DEL 1 Missense_Mutation 38 0.157894736842105 0 TCGA-VQ-A8PE-01 PCDH15 chr10 54161215 54153154 C T 1 0.665947202677888 1 DEL 1 Missense_Mutation 28 0.392857142857143 0 TCGA-VQ-A8PE-01 TENM4 chr11 78659840 78658429 C T 1 0.45438451787364 1 DEL 1 Missense_Mutation 28 0.214285714285714 0 TCGA-VQ-A8PE-01 NBEA chr13 35658218 35649727 C - 1 0.874417992514221 1 DEL 1 Missense_Mutation 90 0.4 0 TCGA-VQ-A8PE-01 TP53 chr17 7679059 7674945 G A 1 0.765891706392707 1 DEL 1 Missense_Mutation 26 0.576923076923077 0 TCGA-VQ-A8PE-01 SMAD4 chr18 51086663 51078439 GTACTTCATACCATGCC - 0.89 0.404477485769965 0.98847384349334 DEL 1 Missense_Mutation 33 0.212121212121212 0 TCGA-VQ-A8PE-01 MUC16 chr19 8971219 8962971 G A 0.87 0.336502922558082 0.986718281723066 DEL 1 Missense_Mutation 30 0.166666666666667 0 TCGA-CG-4469-01 ARID1A chr1 26785404 26779921 T G 1 0.905623849739662 1 DEL 1 Missense_Mutation 94 0.74468085106383 0 TCGA-CG-4469-01 FLG chr1 152311913 152305051 C T 1 0.904831285370862 1 DEL 1 Missense_Mutation 1008 0.381944444444444 0 TCGA-CG-4469-01 SPTA1 chr1 158668102 158666337 C G 1 0.56775364897264 1 DEL 1 Missense_Mutation 34 0.382352941176471 0 TCGA-CG-4469-01 HMCN1 chr1 185993663 185989519 A C 1 0.91009140472495 1 DEL 1 Missense_Mutation 246 0.459349593495935 0 TCGA-CG-4469-01 RYR2 chr1 237457202 237454455 A C 1 0.788793704081876 1 DEL 1 Missense_Mutation 111 0.414414414414414 0 TCGA-CG-4469-01 LRP1B chr2 140886196 140884005 T A 1 0.798852060101897 1 DEL 1 Missense_Mutation 157 0.394904458598726 0 TCGA-CG-4469-01 TTN chr2 178625337 178624554 A G 0.9 0.719022090708461 1 DEL 1 Missense_Mutation 186 0.344086021505376 0 TCGA-CG-4469-01 TTN chr2 178639961 178633619 T G 1 0.774722124383242 1 DEL 1 Missense_Mutation 71 0.450704225352113 0 TCGA-CG-4469-01 TTN chr2 178733878 178729455 T G 1 0.861371198760109 1 DEL 1 Missense_Mutation 189 0.428571428571429 0 TCGA-CG-4469-01 ERBB4 chr2 211733797 211725099 C T 0.66 0.482107946696112 0.867302107726878 DEL 0 Nonsense_Mutation 130 0.253846153846154 1 TCGA-CG-4469-01 CTNNB1 chr3 41238780 41233689 G - 1 0.850466562945783 1 DEL 1 Missense_Mutation 267 0.397003745318352 0 TCGA-CG-4469-01 FAT4 chr4 125325832 125316775 C T 0.82 0.51509992106835 0.985095302678513 DEL 1 Missense_Mutation 51 0.313725490196078 0 TCGA-CG-4469-01 FAT4 chr4 125459449 125451653 A C 1 0.859266835874644 1 DEL 1 Missense_Mutation 297 0.397306397306397 0 TCGA-CG-4469-01 DCHS2 chr4 154333766 154331627 A T 0.76 0.446667358755064 0.979513589220003 DEL 1 Missense_Mutation 41 0.292682926829268 0 TCGA-CG-4469-01 CTNND2 chr5 10974716 10973556 T G 1 0.882204898015559 1 DEL 1 Missense_Mutation 186 0.451612903225806 0 TCGA-CG-4469-01 CMYA5 chr5 79744311 79734348 G T 0.91 0.692880999322325 1 DEL 1 Missense_Mutation 126 0.349206349206349 0 TCGA-CG-4469-01 CMYA5 chr5 79747844 79738409 A G 1 0.701852672275875 1 DEL 1 Missense_Mutation 81 0.382716049382716 0 TCGA-CG-4469-01 CMYA5 chr5 79807366 79799555 A G 1 0.700412537349079 1 DEL 1 Missense_Mutation 58 0.413793103448276 0 TCGA-CG-4469-01 APC chr5 112842863 112839856 G A 1 0.80757505614769 1 DEL 1 Missense_Mutation 109 0.431192660550459 0 TCGA-CG-4469-01 PKHD1 chr6 51755930 51747792 A G 0.45 0.308602379821157 0.613915271118 DEL 0 Nonsense_Mutation 158 0.170886075949367 1 TCGA-CG-4469-01 ADGRB3 chr6 68646067 68639231 A G 1 0.805710790249153 1 DEL 1 Missense_Mutation 185 0.389189189189189 0 TCGA-CG-4469-01 RIMS1 chr6 72104618 72097116 A C 0.87 0.634508189886741 0.988879592568465 DEL 1 Missense_Mutation 99 0.333333333333333 0 TCGA-CG-4469-01 DNAH11 chr7 21750770 21748738 T G 0.88 0.704779762478968 0.988524126911444 DEL 1 Missense_Mutation 287 0.24390243902439 0 TCGA-CG-4469-01 PCLO chr7 83141166 83135204 T G 1 0.972618304723435 1 DEL 1 Missense_Mutation 350 0.565714285714286 0 TCGA-CG-4469-01 PCLO chr7 83159569 83155626 T G 0.91 0.585807740314116 1 DEL 1 Missense_Mutation 79 0.253164556962025 0 TCGA-CG-4469-01 CSMD1 chr8 2941136 2938703 T A 1 0.785498358957661 1 DEL 1 Missense_Mutation 47 0.468085106382979 0 TCGA-CG-4469-01 CSMD1 chr8 2978926 2974553 C T 1 0.895337468793495 1 DEL 1 Missense_Mutation 69 0.608695652173913 0 TCGA-CG-4469-01 CSMD1 chr8 3090345 3087187 C G 1 0.944663397054966 1 DEL 1 Missense_Mutation 162 0.561728395061728 0 TCGA-CG-4469-01 CSMD1 chr8 3182958 3181110 T G 1 0.858761256185079 1 DEL 1 Missense_Mutation 50 0.6 0 TCGA-CG-4469-01 CSMD1 chr8 3405141 3396260 A C 1 0.711135457996657 1 DEL 1 Missense_Mutation 15 0.733333333333333 0 TCGA-CG-4469-01 CSMD1 chr8 4001094 3997966 T G 1 0.813743014435178 1 DEL 1 Missense_Mutation 42 0.547619047619048 0 TCGA-CG-4469-01 TRPA1 chr8 72028100 72026066 A C 0.97 0.565448130681313 1 DEL 1 Missense_Mutation 56 0.267857142857143 0 TCGA-CG-4469-01 CSMD3 chr8 112295484 112289494 A G 1 0.95635501248477 1 DEL 0 Silent 103 0.864077669902913 0 TCGA-CG-4469-01 CSMD3 chr8 112806594 112800249 A C 1 0.934586250519501 1 DEL 1 Missense_Mutation 185 0.481081081081081 0 TCGA-CG-4469-01 TLR4 chr9 117720454 117713510 T G 1 0.80317038633276 1 DEL 1 Missense_Mutation 201 0.383084577114428 0 TCGA-CG-4469-01 TMEM132D chr12 129080578 129074552 T C 0.97 0.738675390119375 1 DEL 1 Missense_Mutation 126 0.373015873015873 0 TCGA-CG-4469-01 SACS chr13 23340695 23340686 G A 1 0.978387377836007 1 DEL 1 Missense_Mutation 445 0.559550561797753 0 TCGA-CG-4469-01 NBEA chr13 35317787 35309538 A C 0.82 0.33057613440824 0.985272453188385 DEL 1 Missense_Mutation 22 0.227272727272727 0 TCGA-CG-4469-01 SLITRK5 chr13 87684512 87677378 T C 1 0.900585313374128 1 DEL 1 Missense_Mutation 122 0.467213114754098 0 TCGA-CG-4469-01 TP53 chr17 7679601 7674894 G A 0.89 0.646989276823829 1 DEL 1 Missense_Mutation 45 0.555555555555556 0 TCGA-CG-4469-01 DNAH9 chr17 11825483 11822805 C T 1 0.803919353553021 1 DEL 1 Missense_Mutation 83 0.626506024096386 0 TCGA-CG-4469-01 LAMA1 chr18 6983187 6977734 G A 1 0.725813605290289 1 DEL 1 Missense_Mutation 51 0.450980392156863 0 TCGA-CG-4469-01 SMAD4 chr18 51054535 51047224 G C 0.93 0.794892410862605 1 DEL 1 Missense_Mutation 148 0.581081081081081 0 TCGA-CG-4469-01 ZNF208 chr19 21982025 21973871 T C 0.9 0.710275278534818 1 DEL 1 Missense_Mutation 162 0.345679012345679 0 TCGA-CG-4469-01 RYR1 chr19 38497362 38490248 G A 0.81 0.525077000954258 0.983589140784133 DEL 1 Missense_Mutation 58 0.310344827586207 0 TCGA-CG-4469-01 PEG3 chr19 56818562 56817550 A T 0.99 0.769184834545714 1 DEL 1 Missense_Mutation 147 0.380952380952381 0 TCGA-CG-4469-01 PEG3 chr19 56831379 56823652 T G 1 0.88208066929606 1 DEL 1 Missense_Mutation 152 0.473684210526316 0 TCGA-CD-8532-01 RP1 chr8 54640207 54630280 T C 0.44 0.202068272887437 0.857734490337218 DEL 0 Nonsense_Mutation 67 0.0895522388059701 1 TCGA-RD-A7BS-01 LRP1B chr2 141020227 141013650 A - 0.72 0.386231969949445 0.978452580547048 DEL 1 Missense_Mutation 118 0.0847457627118644 0 TCGA-BR-8679-01 FMN2 chr1 240394396 240392539 T G 1 0.577267173441621 1 DEL 1 Missense_Mutation 70 0.142857142857143 0 TCGA-BR-8679-01 THSD7B chr2 137174760 137170912 T C 1 0.831695821565774 1 DEL 1 Missense_Mutation 68 0.367647058823529 0 TCGA-BR-8679-01 XIRP2 chr2 166910164 166903700 C T 1 0.711112087690697 1 DEL 1 Missense_Mutation 104 0.192307692307692 0 TCGA-BR-8679-01 TTN chr2 178724985 178720621 A G 1 0.568762083698993 1 DEL 1 Missense_Mutation 21 0.333333333333333 0 TCGA-BR-8679-01 ERBB4 chr2 211664405 211657823 T G 1 0.665412034448987 1 DEL 1 Missense_Mutation 114 0.166666666666667 0 TCGA-BR-8679-01 FAT4 chr4 125325796 125319520 G A 1 0.611559286492504 1 DEL 1 Missense_Mutation 117 0.162393162393162 0 TCGA-BR-8679-01 ZFHX4 chr8 76851991 76851651 C A 1 0.423414695296302 1 DEL 1 Missense_Mutation 48 0.125 0 TCGA-BR-8679-01 TLR4 chr9 117714413 117713435 A G 1 0.911530877327356 1 DEL 1 Missense_Mutation 65 0.661538461538462 0 TCGA-BR-8679-01 TP53 chr17 7677313 7676063 G - 1 0.919599672491955 1 DEL 1 Missense_Mutation 95 0.536842105263158 0 TCGA-BR-8679-01 EPB41L3 chr18 5404769 5397281 G A 1 0.766365021859134 1 DEL 1 Missense_Mutation 120 0.225 0 TCGA-D7-6525-01 PXDN chr2 1680734 1673775 A C 1 0.780933750370217 1 DEL 1 Missense_Mutation 86 0.267441860465116 0 TCGA-D7-6525-01 TTN chr2 178792006 178789375 T G 1 0.890316365080503 1 DEL 1 Missense_Mutation 148 0.317567567567568 0 TCGA-D7-6525-01 MAP2 chr2 209698717 209693388 A C 1 0.711321244412511 1 DEL 1 Missense_Mutation 45 0.311111111111111 0 TCGA-D7-6525-01 DCHS2 chr4 154324834 154320987 G A 1 0.86090763960802 1 DEL 1 Missense_Mutation 115 0.31304347826087 0 TCGA-D7-6525-01 DNAH5 chr5 13826040 13824227 A T 1 0.796775345500271 1 DEL 1 Missense_Mutation 60 0.35 0 TCGA-D7-6525-01 CMYA5 chr5 79740336 79736153 G T 1 0.779279784342405 1 DEL 1 Missense_Mutation 71 0.295774647887324 0 TCGA-D7-6525-01 ADGRV1 chr5 90657897 90653379 T G 1 0.664614548526598 1 DEL 1 Missense_Mutation 61 0.229508196721311 0 TCGA-D7-6525-01 NAV3 chr12 78060844 78050940 G A 1 0.71936160254072 1 DEL 1 Missense_Mutation 25 0.48 0 TCGA-D7-6525-01 TMEM132D chr12 129085814 129078687 C A 1 0.684328735227705 1 DEL 1 Missense_Mutation 125 0.152 0 TCGA-D7-6525-01 NBEA chr13 35672870 35668392 C A 1 0.392551843402058 1 DEL 1 Missense_Mutation 12 0.333333333333333 0 TCGA-D7-6525-01 SLITRK5 chr13 87679015 87677574 C T 1 0.598604858515559 1 DEL 1 Missense_Mutation 37 0.27027027027027 0 TCGA-D7-6525-01 TP53 chr17 7680490 7674894 G A 1 0.724967904732456 1 DEL 1 Missense_Mutation 31 0.451612903225806 0 TCGA-D7-6525-01 MUC16 chr19 8958582 8955599 C A 1 0.874548217334265 1 DEL 1 Missense_Mutation 85 0.447058823529412 0 TCGA-D7-6525-01 PEG3 chr19 56829607 56824420 G T 1 0.823083120607204 1 DEL 1 Missense_Mutation 110 0.272727272727273 0 TCGA-HU-A4G6-01 ARID1A chr1 26775209 26774361 C - 1 0.78364607040419 1 DEL 1 Missense_Mutation 40 0.5 0 TCGA-HU-A4G6-01 CTNNB1 chr3 41228967 41224612 G A 1 0.783780148951019 1 DEL 0 Silent 20 0.8 0 TCGA-HU-A4G6-01 FAT4 chr4 125325530 125318673 A C 0.7 0.41253313586407 0.967472541837601 DEL 0 Nonsense_Mutation 70 0.185714285714286 1 TCGA-HU-A4G6-01 NBEA chr13 35657177 35649673 C A 0.94 0.663737397461639 1 DEL 1 Missense_Mutation 214 0.163551401869159 0 TCGA-HU-A4G6-01 MUC16 chr19 8983169 8976079 C A 1 0.762053116656967 1 DEL 1 Missense_Mutation 96 0.322916666666667 0 TCGA-HU-A4G6-01 PTPRT chr20 42106442 42104587 T G 0.84 0.532074023162992 0.987661890518416 DEL 1 Missense_Mutation 130 0.146153846153846 0 TCGA-BR-A4QM-01 FLG2 chr1 152361050 152352130 T G 0.94 0.636835871687064 1 DEL 1 Missense_Mutation 130 0.207692307692308 0 TCGA-BR-A4QM-01 TTN chr2 178747615 178741039 A T 1 0.623382729134917 1 DEL 1 Missense_Mutation 96 0.21875 0 TCGA-BR-A4QM-01 FAT4 chr4 125450902 125449597 T G 0.41 0.162744583088427 0.889619061419259 DEL 0 Nonsense_Mutation 44 0.0909090909090909 1 TCGA-BR-A4QM-01 CDH1 chr16 68817348 68815683 G A 1 0.857213347012621 1 DEL 1 Missense_Mutation 53 0.547169811320755 0 TCGA-BR-A4QM-01 DNAH9 chr17 11767468 11763573 G T 1 0.61331332470643 1 DEL 1 Missense_Mutation 22 0.409090909090909 0 TCGA-BR-A4QM-01 LAMA1 chr18 7126006 7117678 C T 0.93 0.439295766997412 0.989996795084572 DEL 1 Missense_Mutation 39 0.205128205128205 0 TCGA-BR-A4QM-01 DCC chr18 53389442 53386048 A C 1 0.494332300731036 1 DEL 1 Missense_Mutation 17 0.352941176470588 0 TCGA-D7-6817-01 THSD7B chr2 137275965 137272535 A C 0.51 0.171802933958053 0.95933280758318 DEL 0 Nonsense_Mutation 36 0.0833333333333333 1 TCGA-D7-6817-01 TTN chr2 178576724 178568446 C T 1 0.552740989235316 1 DEL 1 Missense_Mutation 76 0.171052631578947 0 TCGA-D7-6817-01 PREX2 chr8 68018473 68017897 G T 1 0.615755504956384 1 DEL 1 Missense_Mutation 30 0.3 0 TCGA-D7-6817-01 PREX2 chr8 68019886 68017898 T A 1 0.615755504956384 1 DEL 1 Missense_Mutation 30 0.3 0 TCGA-D7-6817-01 PREX2 chr8 68074109 68069851 G T 0.39 0.218199754156832 0.679568476062466 DEL 0 Nonsense_Mutation 198 0.0555555555555556 1 TCGA-D7-6817-01 ZFHX4 chr8 76780255 76778404 T A 0.66 0.45649241372195 0.909503220058365 DEL 0 Nonsense_Mutation 301 0.0930232558139535 1 TCGA-D7-6817-01 TP53 chr17 7683599 7673802 C T 1 0.601899678762784 1 DEL 1 Missense_Mutation 33 0.303030303030303 0 TCGA-D7-6817-01 KIF2B chr17 53833072 53823377 G C 0.87 0.573179085924495 0.989450737316913 DEL 1 Missense_Mutation 196 0.122448979591837 0 TCGA-D7-6817-01 MUC16 chr19 8953380 8952426 G T 1 0.890956101615943 1 DEL 1 Missense_Mutation 157 0.343949044585987 0 TCGA-D7-8573-01 COL6A3 chr2 237404220 237394745 G A 0.32 0.154724991626082 0.631415072707281 DEL 0 Nonsense_Mutation 115 0.0608695652173913 1 TCGA-D7-8573-01 CTNNB1 chr3 41225242 41224652 TACCACAGCTCCTTCTCTGAG - 1 0.771291292363383 1 DEL 1 Missense_Mutation 56 0.357142857142857 0 TCGA-D7-8573-01 DCHS2 chr4 154335610 154332867 T C 1 0.642330712664925 1 DEL 1 Missense_Mutation 46 0.304347826086957 0 TCGA-D7-8573-01 ADGRB3 chr6 69346350 69339392 C T 1 0.926806463326421 1 DEL 1 Missense_Mutation 170 0.411764705882353 0 TCGA-D7-8573-01 ABCA13 chr7 48280075 48272486 A C 1 0.743043104229946 1 DEL 1 Missense_Mutation 67 0.298507462686567 0 TCGA-VQ-A8PY-01 FLG chr1 152315536 152307496 C T 0.62 0.484194687087023 0.787853423786293 DEL 0 Nonsense_Mutation 721 0.0832177531206657 1 TCGA-VQ-A8PY-01 FMN2 chr1 240438728 240438172 C A 1 0.861414711076948 1 DEL 1 Missense_Mutation 200 0.225 0 TCGA-VQ-A8PY-01 TP53 chr17 7680654 7675161 G C 1 0.737965337214785 1 DEL 1 Missense_Mutation 66 0.272727272727273 0 TCGA-VQ-A8PY-01 DSEL chr18 67521423 67513131 T C 0.58 0.343957104695582 0.905681133996734 DEL 0 Nonsense_Mutation 206 0.0679611650485437 1 TCGA-KB-A93G-01 SPTA1 chr1 158638541 158634599 C A 0.45 0.270621450418846 0.711379595721549 DEL 0 Nonsense_Mutation 199 0.0753768844221105 1 TCGA-KB-A93G-01 RYR2 chr1 237597343 237590764 C T 0.43 0.274995110021736 0.639427367697587 DEL 0 Nonsense_Mutation 278 0.0719424460431655 1 TCGA-KB-A93G-01 RYR2 chr1 237616985 237614816 G C 0.46 0.212974933310628 0.89060076773381 DEL 0 Nonsense_Mutation 77 0.0779220779220779 1 TCGA-KB-A93G-01 DNAH5 chr5 13768869 13766115 C T 1 0.690425386638306 1 DEL 1 Missense_Mutation 178 0.174157303370787 0 TCGA-KB-A93G-01 DNAH5 chr5 13890678 13885181 C A 0.68 0.396169802494664 0.964555769399689 DEL 0 Nonsense_Mutation 114 0.114035087719298 1 TCGA-KB-A93G-01 APC chr5 112828407 112821899 C T 0.72 0.426378297353983 0.973134088006572 DEL 0 Nonsense_Mutation 116 0.120689655172414 1 TCGA-KB-A93G-01 ADGRB3 chr6 68947301 68943834 C A 0.45 0.259449917109964 0.758969703234388 DEL 0 Nonsense_Mutation 157 0.0764331210191083 1 TCGA-KB-A93G-01 SYNE1 chr6 152329578 152326591 G C 0.79 0.430795072300609 0.984028605628507 DEL 0 Nonsense_Mutation 83 0.132530120481928 1 TCGA-KB-A93G-01 CSMD1 chr8 3093639 3087276 C A 0.89 0.633376067058796 1 DEL 0 Nonsense_Mutation 234 0.14957264957265 1 TCGA-KB-A93G-01 TP53 chr17 7675937 7675095 C T 0.87 0.551749752209874 0.989372743619916 DEL 0 Nonsense_Mutation 137 0.145985401459854 1 TCGA-KB-A93G-01 MUC16 chr19 8940036 8936905 C A 0.57 0.400337220900752 0.79869293871768 DEL 0 Nonsense_Mutation 300 0.0966666666666667 1 TCGA-CG-5734-01 FLG chr1 152315842 152313178 G T 1 0.970128270486319 1 DEL 1 Missense_Mutation 1080 0.207407407407407 0 TCGA-CG-5734-01 PREX2 chr8 68126991 68120196 G T 0.69 0.390855761155326 0.970764990354214 DEL 0 Nonsense_Mutation 160 0.075 1 TCGA-CG-5734-01 CSMD3 chr8 112252219 112244489 T C 0.59 0.345409230767937 0.923913538108675 DEL 0 Nonsense_Mutation 180 0.0722222222222222 1 TCGA-CG-5734-01 TP53 chr17 7681595 7676537 A - 1 0.364299686375219 0.989601157576164 DEL 1 Missense_Mutation 40 0.125 0 TCGA-CG-5734-01 MUC16 chr19 8939068 8936938 C A 0.97 0.666284104780939 1 DEL 1 Missense_Mutation 278 0.118705035971223 0 TCGA-D7-A6EX-01 SPTA1 chr1 158644133 158638142 G A 1 0.646043978004474 1 DEL 1 Missense_Mutation 100 0.21 0 TCGA-D7-A6EX-01 TTN chr2 178585242 178578977 C A 1 0.775888882276035 1 DEL 1 Missense_Mutation 64 0.375 0 TCGA-D7-A6EX-01 COL6A3 chr2 237348872 237340857 A C 1 0.666817165143125 1 DEL 1 Missense_Mutation 101 0.217821782178218 0 TCGA-D7-A6EX-01 CTNNB1 chr3 41233163 41224606 G C 1 0.635520700006093 1 DEL 1 Missense_Mutation 44 0.363636363636364 0 TCGA-D7-A6EX-01 TRPA1 chr8 72027911 72026024 C T 0.82 0.472608072751295 0.986406636617809 DEL 1 Missense_Mutation 80 0.1625 0 TCGA-D7-A6EX-01 CUBN chr10 16852833 16851328 A C 1 0.673482242062435 1 DEL 1 Missense_Mutation 133 0.180451127819549 0 TCGA-D7-A6EX-01 TP53 chr17 7682749 7675088 C T 1 0.911697600564578 1 DEL 1 Missense_Mutation 58 0.775862068965517 0 TCGA-D7-A6EX-01 EPB41L3 chr18 5406890 5398079 G A 1 0.866422496400459 1 DEL 1 Missense_Mutation 460 0.265217391304348 0 TCGA-VQ-A91V-01 SPTA1 chr1 158688479 158681576 T G 1 0.879157379669041 1 DEL 1 Missense_Mutation 181 0.447513812154696 0 TCGA-VQ-A91V-01 FMN2 chr1 240332870 240329110 A G 0.82 0.538393352342612 0.984848031628813 DEL 1 Missense_Mutation 61 0.311475409836066 0 TCGA-VQ-A91V-01 TTN chr2 178727867 178722128 T G 1 0.811954329283732 1 DEL 1 Missense_Mutation 133 0.413533834586466 0 TCGA-VQ-A91V-01 ERBB4 chr2 211389456 211383871 T G 0.89 0.670911963058956 1 DEL 1 Missense_Mutation 118 0.338983050847458 0 TCGA-VQ-A91V-01 FAT4 chr4 125451545 125451065 A C 0.81 0.5766119207624 0.980503490680657 DEL 1 Missense_Mutation 91 0.307692307692308 0 TCGA-VQ-A91V-01 FAT4 chr4 125465019 125463588 T G 1 0.486957165635669 1 DEL 1 Missense_Mutation 12 0.5 0 TCGA-VQ-A91V-01 DCHS2 chr4 154262401 154259679 T G 0.82 0.55346882167439 0.983565262577631 DEL 1 Missense_Mutation 71 0.309859154929577 0 TCGA-VQ-A91V-01 DCHS2 chr4 154337635 154332871 G A 1 0.771939454139044 1 DEL 1 Missense_Mutation 47 0.51063829787234 0 TCGA-VQ-A91V-01 FAT2 chr5 151546945 151542945 G A 1 0.772796562210244 1 DEL 1 Missense_Mutation 94 0.414893617021277 0 TCGA-VQ-A91V-01 PKHD1 chr6 51648374 51648051 G T 1 0.754780472399333 1 DEL 1 Missense_Mutation 66 0.439393939393939 0 TCGA-VQ-A91V-01 DST chr6 56573502 56572854 C T 1 0.607496464287679 1 DEL 1 Missense_Mutation 27 0.444444444444444 0 TCGA-VQ-A91V-01 ADGRB3 chr6 69050800 69049321 T G 1 0.783023006689065 1 DEL 1 Missense_Mutation 129 0.395348837209302 0 TCGA-VQ-A91V-01 UTRN chr6 144469786 144462684 C A 1 0.746302513172162 1 DEL 1 Missense_Mutation 45 0.488888888888889 0 TCGA-VQ-A91V-01 DNAH11 chr7 21681794 21681587 A C 1 0.759751127182942 1 DEL 1 Missense_Mutation 66 0.333333333333333 0 TCGA-VQ-A91V-01 CSMD1 chr8 3399165 3396344 T C 0.88 0.315989693646915 0.986674990960661 DEL 1 Missense_Mutation 12 0.333333333333333 0 TCGA-VQ-A91V-01 PREX2 chr8 68129460 68119480 A C 1 0.836633626431492 1 DEL 1 Missense_Mutation 177 0.327683615819209 0 TCGA-VQ-A91V-01 PREX2 chr8 68139785 68134274 T G 1 0.684090155697983 1 DEL 1 Missense_Mutation 43 0.372093023255814 0 TCGA-VQ-A91V-01 RIMS2 chr8 103895609 103885863 A C 1 0.823032503757781 1 DEL 1 Missense_Mutation 47 0.531914893617021 0 TCGA-VQ-A91V-01 CSMD3 chr8 112337902 112335437 A C 1 0.83590471741005 1 DEL 1 Missense_Mutation 58 0.5 0 TCGA-VQ-A91V-01 TG chr8 132886593 132886501 T G 1 0.892864670664202 1 DEL 0 Silent 178 0.387640449438202 0 TCGA-VQ-A91V-01 FAT3 chr11 92803641 92800229 T G 0.99 0.715298992142816 1 DEL 1 Missense_Mutation 96 0.375 0 TCGA-VQ-A91V-01 DYNC2H1 chr11 103172859 103168779 T G 0.71 0.428288571347554 0.968275158992294 DEL 1 Missense_Mutation 48 0.270833333333333 0 TCGA-VQ-A91V-01 SACS chr13 23333760 23331970 A C 1 0.78714955059617 1 DEL 1 Missense_Mutation 131 0.396946564885496 0 TCGA-VQ-A91V-01 SACS chr13 23340140 23335666 A C 1 0.781133706044402 1 DEL 1 Missense_Mutation 89 0.426966292134831 0 TCGA-VQ-A91V-01 SACS chr13 23339169 23338597 A C 1 0.795712038200283 1 DEL 1 Missense_Mutation 144 0.395833333333333 0 TCGA-VQ-A91V-01 DCLK1 chr13 35816100 35810934 T G 1 0.827308130906397 1 DEL 1 Missense_Mutation 113 0.442477876106195 0 TCGA-VQ-A91V-01 DCLK1 chr13 35955171 35947435 A C 1 0.822938729263493 1 DEL 1 Missense_Mutation 33 0.696969696969697 0 TCGA-VQ-A91V-01 TP53 chr17 7682383 7675212 A G 1 0.826775020872671 1 DEL 1 Missense_Mutation 25 0.88 0 TCGA-VQ-A91V-01 EPB41L3 chr18 5398762 5394734 T G 1 0.837676774011214 1 DEL 1 Missense_Mutation 79 0.658227848101266 0 TCGA-VQ-A91V-01 EPB41L3 chr18 5434142 5434012 C T 1 0.910825665168432 1 DEL 1 Missense_Mutation 74 0.797297297297297 0 TCGA-VQ-A91V-01 DCC chr18 53345629 53339760 A G 1 0.873666765969485 1 DEL 1 Missense_Mutation 65 0.738461538461539 0 TCGA-VQ-A91V-01 ZNF536 chr19 30552213 30548474 T C 1 0.916224250913773 1 DEL 1 Missense_Mutation 96 0.760416666666667 0 TCGA-VQ-A91V-01 PEG3 chr19 56817571 56814248 T G 1 0.749480309249457 1 DEL 1 Missense_Mutation 67 0.432835820895522 0 TCGA-VQ-A8PM-01 CSMD3 chr8 112592505 112587070 A G 1 0.412971701483886 1 DEL 1 Missense_Mutation 33 0.151515151515152 0 TCGA-VQ-A8PM-01 NAV3 chr12 78126209 78119242 A C 0.76 0.423871863124805 0.981311296404762 DEL 1 Missense_Mutation 160 0.075 0 TCGA-VQ-A8PM-01 NAV3 chr12 78137261 78137218 A G 1 0.543488862837682 1 DEL 1 Missense_Mutation 50 0.16 0 TCGA-D7-6521-01 ARID1A chr1 26733557 26729723 C T 1 0.903876390846043 1 DEL 0 Silent 104 0.423076923076923 0 TCGA-D7-6521-01 ABCA13 chr7 48277505 48273718 A - 1 0.520461434844272 1 DEL 1 Missense_Mutation 25 0.24 0 TCGA-D7-6521-01 PLXNA4 chr7 132203032 132194133 A G 0.88 0.522938488394495 0.989789099921246 DEL 1 Missense_Mutation 142 0.112676056338028 0 TCGA-D7-6521-01 RP1 chr8 54636902 54627352 C T 1 0.462313487819387 1 DEL 1 Missense_Mutation 52 0.153846153846154 0 TCGA-D7-6521-01 TAF1L chr9 32639716 32630242 C T 0.97 0.5904101712199 1 DEL 1 Missense_Mutation 133 0.142857142857143 0 TCGA-BR-8690-01 TTN chr2 178628429 178621975 TT - 1 0.676481212566923 1 DEL 1 Missense_Mutation 31 0.354838709677419 0 TCGA-BR-8690-01 TTN chr2 178726445 178719638 C T 0.77 0.471795905800197 0.981458879358383 DEL 1 Missense_Mutation 141 0.113475177304965 0 TCGA-BR-8690-01 FAT4 chr4 125452034 125449151 T A 1 0.754192671136781 1 DEL 1 Missense_Mutation 119 0.210084033613445 0 TCGA-BR-8690-01 DOCK2 chr5 169767250 169761584 C A 1 0.680831099022393 1 DEL 1 Missense_Mutation 181 0.154696132596685 0 TCGA-BR-8690-01 PCLO chr7 82950379 82949814 G A 1 0.820516160175322 1 DEL 1 Missense_Mutation 110 0.254545454545455 0 TCGA-BR-8690-01 TRPA1 chr8 72047122 72038911 C A 1 0.486716544923181 1 DEL 1 Missense_Mutation 66 0.121212121212121 0 TCGA-BR-8690-01 CSMD3 chr8 112927144 112921744 A C 1 0.647691683353623 1 DEL 1 Missense_Mutation 117 0.128205128205128 0 TCGA-BR-8690-01 TRPS1 chr8 115416443 115414930 A C 0.95 0.654744759434805 1 DEL 1 Missense_Mutation 374 0.0882352941176471 0 TCGA-BR-8690-01 TLR4 chr9 117719180 117713446 T G 1 0.590298304575687 1 DEL 1 Missense_Mutation 94 0.159574468085106 0 TCGA-BR-8690-01 CDH23 chr10 71787039 71778288 C T 1 0.565506791744055 1 DEL 1 Missense_Mutation 61 0.180327868852459 0 TCGA-BR-8690-01 GRM5 chr11 88575185 88567131 T G 0.88 0.515577981395926 0.989746708230917 DEL 1 Missense_Mutation 116 0.129310344827586 0 TCGA-BR-8690-01 ABCC9 chr12 21849620 21844867 G T 1 0.661330581673762 1 DEL 1 Missense_Mutation 72 0.208333333333333 0 TCGA-BR-8690-01 DNAH3 chr16 20973048 20965110 T A 1 0.936980326928603 1 DEL 1 Missense_Mutation 288 0.309027777777778 0 TCGA-BR-8690-01 DNAH3 chr16 20973608 20965111 T G 1 0.938762165956492 1 DEL 1 Missense_Mutation 286 0.314685314685315 0 TCGA-BR-8690-01 TP53 chr17 7675290 7675182 G A 1 0.862249670177507 1 DEL 1 Missense_Mutation 69 0.434782608695652 0 TCGA-CD-5798-01 PXDN chr2 1655226 1649108 G A 1 0.304679332328197 1 DEL 1 Missense_Mutation 22 0.136363636363636 0 TCGA-CD-5798-01 TTN chr2 178542809 178537708 C T 0.88 0.410396194855556 0.988193616662097 DEL 1 Missense_Mutation 95 0.0842105263157895 0 TCGA-CD-5798-01 CTNND2 chr5 11000652 10992595 G A 1 0.570912675459563 1 DEL 1 Missense_Mutation 119 0.109243697478992 0 TCGA-CD-5798-01 DNAH11 chr7 21595512 21589361 C A 1 0.599398414118415 1 DEL 1 Missense_Mutation 166 0.102409638554217 0 TCGA-CD-5798-01 TMEM132D chr12 129707483 129700257 C T 1 0.47843845973311 1 DEL 1 Missense_Mutation 38 0.157894736842105 0 TCGA-CD-5798-01 SACS chr13 23341216 23335886 C T 0.99 0.462974081743252 1 DEL 1 Missense_Mutation 95 0.0947368421052632 0 TCGA-CD-5798-01 DCLK1 chr13 36130905 36126085 G A 1 0.566658942979462 1 DEL 1 Missense_Mutation 90 0.122222222222222 0 TCGA-CD-5798-01 EPB41L3 chr18 5433048 5424308 C A 1 0.8785138526196 1 DEL 1 Missense_Mutation 307 0.162866449511401 0 TCGA-BR-4267-01 NEB chr2 151730879 151725473 C G 0.8 0.611627118976899 0.97282291586013 DEL 1 Missense_Mutation 169 0.260355029585799 0 TCGA-BR-4267-01 CMYA5 chr5 79748413 79739155 A C 1 0.683486164886703 1 DEL 1 Missense_Mutation 70 0.342857142857143 0 TCGA-BR-4267-01 APC chr5 112842046 112838934 C T 0.96 0.681799603181385 1 DEL 1 Missense_Mutation 61 0.459016393442623 0 TCGA-BR-4267-01 MUC17 chr7 101047006 101043136 C T 1 0.740191808410655 1 DEL 1 Missense_Mutation 128 0.328125 0 TCGA-BR-4267-01 DNAH3 chr16 20973379 20964526 G A 1 0.860655815930285 1 DEL 1 Missense_Mutation 227 0.365638766519824 0 TCGA-BR-4267-01 SMAD4 chr18 51067030 51065549 G C 1 0.852476154360261 1 DEL 1 Missense_Mutation 59 0.644067796610169 0 TCGA-BR-4267-01 RYR1 chr19 38477958 38477755 G A 1 0.708218543425434 1 DEL 1 Missense_Mutation 50 0.4 0 TCGA-BR-A4J6-01 CTNNB1 chr3 41228656 41224612 G A 0.43 0.184262076749388 0.863717544898813 DEL 0 Nonsense_Mutation 44 0.113636363636364 1 TCGA-BR-A4J6-01 CMYA5 chr5 79730156 79729840 C T 1 0.502624055297075 1 DEL 1 Missense_Mutation 20 0.35 0 TCGA-BR-A4J6-01 SMAD4 chr18 51068702 51067036 G A 1 0.827689452301885 1 DEL 1 Missense_Mutation 89 0.460674157303371 0 TCGA-BR-A4J6-01 MUC16 chr19 8983499 8978986 G T 1 0.707300304694013 1 DEL 1 Missense_Mutation 78 0.307692307692308 0 TCGA-D7-6520-01 FLG2 chr1 152356263 152354647 G A 1 0.798349867120116 1 DEL 1 Missense_Mutation 427 0.17096018735363 0 TCGA-D7-6520-01 RYR2 chr1 237429156 237423100 G T 1 0.927773656398907 1 DEL 1 Missense_Mutation 239 0.297071129707113 0 TCGA-D7-6520-01 APOB chr2 21008794 21002970 A G 1 0.846289936185566 1 DEL 1 Missense_Mutation 164 0.25609756097561 0 TCGA-D7-6520-01 XIRP2 chr2 167259996 167251933 C G 1 0.682592639228516 1 DEL 1 Missense_Mutation 59 0.254237288135593 0 TCGA-D7-6520-01 TTN chr2 178583978 178578899 C T 1 0.790781701534023 1 DEL 1 Missense_Mutation 139 0.23021582733813 0 TCGA-D7-6520-01 PCDH17 chr13 57641188 57634782 G A 1 0.659166811873109 1 DEL 1 Missense_Mutation 36 0.333333333333333 0 TCGA-D7-6520-01 TP53 chr17 7681939 7675088 C T 1 0.790598687985269 1 DEL 1 Missense_Mutation 45 0.466666666666667 0 TCGA-BR-8369-01 COL11A1 chr1 102888013 102878078 A C 1 0.546542091981859 1 DEL 1 Missense_Mutation 107 0.121495327102804 0 TCGA-BR-8369-01 APOB chr2 21004684 21003186 C T 1 0.934032134866347 1 DEL 1 Missense_Mutation 368 0.241847826086957 0 TCGA-BR-8369-01 LRP1B chr2 140329714 140324013 C A 1 0.638725182852082 1 DEL 1 Missense_Mutation 121 0.140495867768595 0 TCGA-BR-8369-01 LRP1B chr2 141055233 141049137 A C 1 0.715490216827568 1 DEL 1 Missense_Mutation 290 0.124137931034483 0 TCGA-BR-8369-01 TTN chr2 178568879 178562596 A G 1 0.749899224221842 1 DEL 1 Missense_Mutation 118 0.186440677966102 0 TCGA-BR-8369-01 MAP2 chr2 209697795 209696732 A C 1 0.598540372239069 1 DEL 1 Missense_Mutation 89 0.146067415730337 0 TCGA-BR-8369-01 PLXNA4 chr7 132177581 132168566 C A 0.93 0.447662218211514 0.989971973106346 DEL 1 Missense_Mutation 83 0.108433734939759 0 TCGA-BR-8369-01 TRPS1 chr8 115607247 115604871 A C 1 0.601468277335022 1 DEL 1 Missense_Mutation 182 0.0989010989010989 0 TCGA-BR-8369-01 TRPS1 chr8 115625004 115619951 T G 1 0.634436462688212 1 DEL 1 Missense_Mutation 121 0.12396694214876 0 TCGA-BR-8369-01 LRRK2 chr12 40330299 40323162 G T 0.78 0.335333872858786 0.983707184443775 DEL 1 Missense_Mutation 66 0.0909090909090909 0 TCGA-BR-8369-01 SACS chr13 23341082 23333305 A G 0.99 0.358338710596297 0.989165503896104 DEL 1 Missense_Mutation 43 0.116279069767442 0 TCGA-BR-8369-01 DSEL chr18 67514746 67514459 G T 1 0.522347074882678 1 DEL 1 Missense_Mutation 102 0.117647058823529 0 TCGA-BR-8369-01 MUC16 chr19 8967795 8961148 T C 1 0.845999363303394 1 DEL 1 Missense_Mutation 327 0.162079510703364 0 TCGA-HU-8238-01 FLG2 chr1 152361939 152353864 G A 1 0.840557941221787 1 DEL 1 Missense_Mutation 326 0.251533742331288 0 TCGA-HU-8238-01 OBSCN chr1 228311767 228306440 C A 1 0.629918638507218 1 DEL 1 Missense_Mutation 19 0.473684210526316 0 TCGA-HU-8238-01 THSD7B chr2 137062680 137056603 T C 0.7 0.35403989700803 0.976248123708621 DEL 1 Missense_Mutation 50 0.16 0 TCGA-HU-8238-01 COL6A3 chr2 237394050 237387887 C T 1 0.474157689160907 1 DEL 1 Missense_Mutation 26 0.269230769230769 0 TCGA-HU-8238-01 PIK3CA chr3 179203959 179199103 G A 1 0.760769554317692 1 DEL 1 Missense_Mutation 116 0.275862068965517 0 TCGA-HU-8238-01 DST chr6 56603554 56593685 C T 1 0.90580320610782 1 DEL 1 Missense_Mutation 90 0.533333333333333 0 TCGA-HU-8238-01 DST chr6 56598148 56593942 C T 1 0.80876129275117 1 DEL 1 Missense_Mutation 111 0.315315315315315 0 TCGA-HU-8238-01 RIMS2 chr8 103886874 103885941 T G 0.73 0.408695768466169 0.977685387659687 DEL 1 Missense_Mutation 66 0.166666666666667 0 TCGA-HU-8238-01 SACS chr13 23339496 23331220 C G 0.98 0.586083156279374 1 DEL 1 Missense_Mutation 76 0.223684210526316 0 TCGA-HU-8238-01 ZNF208 chr19 21976481 21974086 T G 1 0.750411364462056 1 DEL 1 Missense_Mutation 93 0.290322580645161 0 TCGA-HU-8238-01 PTPRT chr20 42109749 42106827 G A 1 0.586326281114272 1 DEL 1 Missense_Mutation 92 0.184782608695652 0 TCGA-BR-6706-01 LRP1B chr2 140869987 140867649 T G 0.58 0.3498132647435 0.895488555784453 DEL 0 Nonsense_Mutation 201 0.0746268656716418 1 TCGA-BR-6706-01 XIRP2 chr2 167250813 167243601 G A 0.77 0.307786016984423 0.983351239382303 DEL 1 Missense_Mutation 50 0.1 0 TCGA-BR-6706-01 TTN chr2 178568138 178561239 C T 1 0.571128365618003 1 DEL 1 Missense_Mutation 101 0.138613861386139 0 TCGA-BR-6706-01 TTN chr2 178590151 178580591 A C 1 0.433024861185841 1 DEL 1 Missense_Mutation 52 0.134615384615385 0 TCGA-BR-6706-01 TTN chr2 178588387 178587528 C T 0.65 0.271597108051413 0.975114746701838 DEL 0 Nonsense_Mutation 59 0.0847457627118644 1 TCGA-BR-6706-01 PIK3CA chr3 179216169 179210291 G A 0.99 0.585332683100837 1 DEL 1 Missense_Mutation 141 0.127659574468085 0 TCGA-BR-6706-01 FAT4 chr4 125454003 125450167 T G 0.88 0.43375506620727 0.988663808148296 DEL 1 Missense_Mutation 79 0.113924050632911 0 TCGA-BR-6706-01 ADGRV1 chr5 90704017 90694396 T G 0.71 0.433696580839411 0.969104665303502 DEL 0 Nonsense_Mutation 175 0.0914285714285714 1 TCGA-BR-6706-01 ABCA13 chr7 48275297 48272486 A C 0.62 0.322708072882657 0.957364669030491 DEL 0 Nonsense_Mutation 113 0.079646017699115 1 TCGA-BR-6706-01 PREX2 chr8 68036283 68030512 A G 0.69 0.283039388163627 0.978326384617492 DEL 0 Nonsense_Mutation 56 0.0892857142857143 1 TCGA-BR-6706-01 ZFHX4 chr8 76852787 76851881 A G 0.53 0.243972819139719 0.942977993965843 DEL 0 Nonsense_Mutation 87 0.0689655172413793 1 TCGA-BR-6706-01 TG chr8 132891643 132887471 A G 0.98 0.554196624579218 1 DEL 1 Missense_Mutation 118 0.127118644067797 0 TCGA-BR-6706-01 TLR4 chr9 117717335 117713620 T G 0.63 0.331017199251997 0.96252443154788 DEL 0 Nonsense_Mutation 110 0.0818181818181818 1 TCGA-BR-6706-01 LRRK2 chr12 40330108 40322338 A C 0.47 0.285941367579816 0.735463160850481 DEL 0 Nonsense_Mutation 265 0.060377358490566 1 TCGA-BR-6706-01 TMEM132D chr12 129088708 129081925 T G 0.66 0.314388618837354 0.972728687717728 DEL 0 Nonsense_Mutation 82 0.0853658536585366 1 TCGA-BR-6706-01 NALCN chr13 101292970 101292267 A G 0.93 0.378069347422645 0.988695570025564 DEL 1 Missense_Mutation 50 0.12 0 TCGA-BR-6706-01 MUC16 chr19 8909857 8907862 A C 0.69 0.471889871913854 0.943306596864862 DEL 0 Nonsense_Mutation 291 0.0893470790378007 1 TCGA-BR-6706-01 ZNF536 chr19 30552049 30549154 G T 0.54 0.28163657595097 0.913375694666763 DEL 0 Nonsense_Mutation 130 0.0692307692307692 1 TCGA-BR-6706-01 PTPRT chr20 42111371 42110369 T - 1 0.624938617908646 1 DEL 1 Missense_Mutation 81 0.160493827160494 0 TCGA-BR-8592-01 TTN chr2 178776327 178776123 G A 0.32 0.134339196610928 0.696734059530522 DEL 0 Nonsense_Mutation 96 0.0520833333333333 1 TCGA-BR-8592-01 DNAH7 chr2 195831542 195824352 C T 0.55 0.23462086282976 0.955640530710422 DEL 0 Nonsense_Mutation 55 0.0909090909090909 1 TCGA-BR-8592-01 CDH1 chr16 68814170 68808730 A G 0.97 0.31697594810641 0.988012058744059 DEL 1 Missense_Mutation 25 0.16 0 TCGA-BR-8592-01 ZNF536 chr19 30445853 30444700 C T 0.61 0.33930355840477 0.942105020448733 DEL 0 Nonsense_Mutation 110 0.1 1 TCGA-HF-7134-01 ARID1A chr1 26777490 26771313 CCAG - 1 0.772889442605456 1 DEL 1 Missense_Mutation 44 0.409090909090909 0 TCGA-HF-7134-01 FLG chr1 152314725 152312215 T G 1 0.990194339929263 1 DEL 0 Silent 826 0.662227602905569 0 TCGA-HF-7134-01 SPTA1 chr1 158614659 158612827 T A 1 0.963021813461029 1 DEL 1 Missense_Mutation 172 0.627906976744186 0 TCGA-HF-7134-01 SPTA1 chr1 158617297 158612828 C T 1 0.962730360794451 1 DEL 1 Missense_Mutation 171 0.625730994152047 0 TCGA-HF-7134-01 SPTA1 chr1 158671777 158667886 C A 1 0.688540027431177 1 DEL 1 Missense_Mutation 47 0.25531914893617 0 TCGA-HF-7134-01 NCKAP5 chr2 132792366 132783233 G A 1 0.583345131793761 1 DEL 1 Missense_Mutation 31 0.290322580645161 0 TCGA-HF-7134-01 TTN chr2 178600559 178598863 T G 1 0.896793523535901 1 DEL 1 Missense_Mutation 104 0.432692307692308 0 TCGA-HF-7134-01 TTN chr2 178604368 178599713 C A 1 0.892231026395753 1 DEL 1 Missense_Mutation 82 0.48780487804878 0 TCGA-HF-7134-01 TTN chr2 178602951 178602140 T G 1 0.4924574443187 1 DEL 1 Missense_Mutation 47 0.191489361702128 0 TCGA-HF-7134-01 TTN chr2 178745641 178739662 A C 1 0.804484952250549 1 DEL 1 Missense_Mutation 48 0.4375 0 TCGA-HF-7134-01 MAP2 chr2 209697377 209693216 A G 1 0.608408296206824 1 DEL 1 Missense_Mutation 42 0.261904761904762 0 TCGA-HF-7134-01 ERBB4 chr2 211430255 211420571 T G 1 0.811978810599493 1 DEL 1 Missense_Mutation 63 0.380952380952381 0 TCGA-HF-7134-01 CTNNB1 chr3 41227237 41224622 C T 1 0.775933176811178 1 DEL 1 Missense_Mutation 36 0.472222222222222 0 TCGA-HF-7134-01 SYNE1 chr6 152227614 152224498 A C 1 0.755465365321935 1 DEL 1 Missense_Mutation 58 0.327586206896552 0 TCGA-HF-7134-01 DNAH11 chr7 21643809 21637684 T C 1 0.527873922468306 1 DEL 1 Missense_Mutation 7 0.714285714285714 0 TCGA-HF-7134-01 ZFHX4 chr8 76713836 76705929 A G 1 0.945760346260273 1 DEL 1 Missense_Mutation 131 0.557251908396947 0 TCGA-HF-7134-01 CDH23 chr10 71572202 71566847 G A 1 0.800977589316512 1 DEL 1 Missense_Mutation 76 0.328947368421053 0 TCGA-HF-7134-01 TENM4 chr11 78679439 78672103 T C 1 0.723759696350316 1 DEL 1 Missense_Mutation 42 0.357142857142857 0 TCGA-HF-7134-01 ABCC9 chr12 21935595 21926023 C T 1 0.813727864767174 1 DEL 1 Missense_Mutation 126 0.26984126984127 0 TCGA-HF-7134-01 NBEA chr13 35200390 35195901 A T 1 0.690756220549964 1 DEL 1 Missense_Mutation 48 0.270833333333333 0 TCGA-HF-7134-01 NALCN chr13 101407711 101399106 A C 1 0.838708794071213 1 DEL 1 Missense_Mutation 139 0.244604316546763 0 TCGA-BR-6709-01 HMCN1 chr1 186062153 186055401 A C 1 0.770696897761019 1 DEL 1 Missense_Mutation 97 0.206185567010309 0 TCGA-BR-6709-01 TTN chr2 178607315 178598921 C G 1 0.724825414101078 1 DEL 1 Missense_Mutation 120 0.158333333333333 0 TCGA-BR-6709-01 DCHS2 chr4 154239884 154236871 G A 0.95 0.487701000134968 1 DEL 1 Missense_Mutation 119 0.092436974789916 0 TCGA-BR-6709-01 CSMD3 chr8 112410134 112408365 G T 1 0.798074894989109 1 DEL 1 Missense_Mutation 283 0.120141342756184 0 TCGA-BR-6709-01 DCLK1 chr13 35873044 35871247 T C 1 0.833896568664439 1 DEL 1 Missense_Mutation 143 0.20979020979021 0 TCGA-BR-6709-01 DCC chr18 53213264 53205325 C G 1 0.859751388603995 1 DEL 1 Missense_Mutation 235 0.178723404255319 0 TCGA-RD-A8N1-01 APOB chr2 21037507 21029954 C A 0.97 0.497294795354339 1 DEL 1 Missense_Mutation 94 0.117021276595745 0 TCGA-RD-A8N1-01 ABCA13 chr7 48278691 48272311 C A 1 0.900821609632068 1 DEL 1 Missense_Mutation 146 0.321917808219178 0 TCGA-RD-A8N1-01 TAF1L chr9 32633106 32632569 T C 0.85 0.517825167586306 0.988405515838227 DEL 1 Missense_Mutation 166 0.102409638554217 0 TCGA-RD-A8N1-01 TLR4 chr9 117719779 117713285 G A 0.77 0.354499703789023 0.983110558371896 DEL 1 Missense_Mutation 76 0.0921052631578947 0 TCGA-RD-A8N1-01 PCDH17 chr13 57730398 57725166 C G 0.94 0.558065581543737 1 DEL 1 Missense_Mutation 150 0.113333333333333 0 TCGA-RD-A8N1-01 TP53 chr17 7676033 7675084 G C 1 0.606286058755438 1 DEL 1 Missense_Mutation 54 0.203703703703704 0 TCGA-RD-A8N1-01 PTPRT chr20 42111588 42102210 C A 1 0.393432335599297 0.989962413051181 DEL 1 Missense_Mutation 50 0.12 0 TCGA-CD-8531-01 OBSCN chr1 228251705 228250175 C T 1 0.833126717812292 1 DEL 1 Missense_Mutation 87 0.471264367816092 0 TCGA-CD-8531-01 TTN chr2 178534000 178531856 TGAG - 0.95 0.500474152601733 1 DEL 1 Missense_Mutation 29 0.344827586206897 0 TCGA-CD-8531-01 TTN chr2 178546554 178543167 T C 0.22 0.124897229077988 0.344475654283444 DEL 0 Nonsense_Mutation 179 0.0782122905027933 1 TCGA-CD-8531-01 FAT4 chr4 125323043 125320508 G A 1 0.880325250690668 1 DEL 1 Missense_Mutation 163 0.447852760736196 0 TCGA-CD-8531-01 FAT4 chr4 125455733 125449370 C - 0.96 0.731503383831066 1 DEL 1 Missense_Mutation 134 0.350746268656716 0 TCGA-CD-8531-01 PCDH10 chr4 133154136 133151240 T C 1 0.811566812944668 1 DEL 1 Missense_Mutation 97 0.43298969072165 0 TCGA-CD-8531-01 FAT2 chr5 151510195 151505929 G A 1 0.81184608546619 1 DEL 1 Missense_Mutation 173 0.38150289017341 0 TCGA-CD-8531-01 CSMD3 chr8 112684973 112682634 A G 1 0.707292896139639 1 DEL 1 Missense_Mutation 77 0.376623376623377 0 TCGA-CD-8531-01 PCDH15 chr10 53820055 53811568 A C 1 0.443970495110792 1 DEL 1 Missense_Mutation 15 0.4 0 TCGA-CD-8531-01 TENM4 chr11 78704782 78702199 C T 1 0.680949137765321 1 DEL 1 Missense_Mutation 35 0.457142857142857 0 TCGA-CD-8531-01 FAT3 chr11 92356339 92352866 C A 1 0.844509093578161 1 DEL 1 Missense_Mutation 120 0.441666666666667 0 TCGA-CD-8531-01 FAT3 chr11 92360522 92355296 G A 1 0.727230627145673 1 DEL 1 Missense_Mutation 53 0.433962264150943 0 TCGA-CD-8531-01 SLITRK5 chr13 87680452 87677181 T A 1 0.808377607342944 1 DEL 1 Missense_Mutation 152 0.388157894736842 0 TCGA-CD-8531-01 TP53 chr17 7674487 7674238 C T 1 0.704909571004406 1 DEL 1 Missense_Mutation 39 0.461538461538462 0 TCGA-CD-8531-01 MUC16 chr19 8889138 8885301 C T 0.74 0.445163659230325 0.976048518044766 DEL 1 Missense_Mutation 48 0.270833333333333 0 TCGA-IN-A6RJ-01 HMCN1 chr1 185974399 185965861 G A 0.7 0.387531558462211 0.972192319217567 DEL 0 Nonsense_Mutation 88 0.125 1 TCGA-IN-A6RJ-01 APOB chr2 21036152 21026822 T A 0.82 0.489267057910773 0.986077957957678 DEL 0 Nonsense_Mutation 102 0.147058823529412 1 TCGA-IN-A6RJ-01 LRP1B chr2 140505721 140501770 T A 0.96 0.465048841289064 1 DEL 1 Missense_Mutation 52 0.173076923076923 0 TCGA-IN-A6RJ-01 TTN chr2 178553564 178551692 T C 0.58 0.263552631221536 0.95645769770889 DEL 0 Nonsense_Mutation 58 0.103448275862069 1 TCGA-IN-A6RJ-01 FAT4 chr4 125461324 125451530 A T 1 0.607515404613757 1 DEL 1 Missense_Mutation 105 0.180952380952381 0 TCGA-IN-A6RJ-01 DNAH11 chr7 21568515 21559608 C T 0.62 0.202140596252402 0.974291447387996 DEL 0 Nonsense_Mutation 27 0.111111111111111 1 TCGA-IN-A6RJ-01 CSMD3 chr8 112862964 112859147 T A 0.39 0.178238552035283 0.787703802358982 DEL 0 Nonsense_Mutation 86 0.0697674418604651 1 TCGA-IN-A6RJ-01 PCDH15 chr10 53809406 53807108 T G 1 0.39309124204102 1 DEL 1 Missense_Mutation 24 0.208333333333333 0 TCGA-IN-A6RJ-01 PCDH15 chr10 54217864 54213994 A G 0.73 0.393517602072514 0.978864766490359 DEL 0 Nonsense_Mutation 76 0.131578947368421 1 TCGA-IN-A6RJ-01 EPB41L3 chr18 5403166 5394765 T C 0.82 0.471143058297225 0.986428009879529 DEL 0 Silent 88 0.147727272727273 0 TCGA-IN-A6RJ-01 EPB41L3 chr18 5406768 5397202 C A 1 0.741023134043977 1 DEL 1 Missense_Mutation 153 0.209150326797386 0 TCGA-IN-A6RJ-01 ZNF536 chr19 30449635 30444010 C T 0.76 0.391269157002866 0.982043142747308 DEL 0 Nonsense_Mutation 66 0.136363636363636 1 TCGA-IN-A6RJ-01 ZNF536 chr19 30446122 30445052 C T 1 0.609688130122576 1 DEL 1 Missense_Mutation 81 0.197530864197531 0 TCGA-FP-7829-01 FLG chr1 152310810 152309605 G A 1 0.90393624370546 1 DEL 1 Missense_Mutation 396 0.303030303030303 0 TCGA-FP-7829-01 FMN2 chr1 240098995 240093449 C T 0.77 0.485463191153828 0.979808342387053 DEL 1 Missense_Mutation 88 0.193181818181818 0 TCGA-FP-7829-01 LRP1B chr2 142133236 142130678 C A 0.64 0.306991269658373 0.967135742396226 DEL 1 Missense_Mutation 55 0.127272727272727 0 TCGA-FP-7829-01 TTN chr2 178576578 178573350 C T 0.94 0.523095583080577 1 DEL 1 Missense_Mutation 69 0.188405797101449 0 TCGA-FP-7829-01 MAP2 chr2 209704410 209695805 T C 1 0.52761978127567 1 DEL 1 Missense_Mutation 45 0.222222222222222 0 TCGA-FP-7829-01 COL6A3 chr2 237330111 237325717 G T 1 0.579122799665736 1 DEL 1 Missense_Mutation 51 0.235294117647059 0 TCGA-FP-7829-01 CMYA5 chr5 79762229 79761880 G A 1 0.827305905139673 1 DEL 0 Silent 20 0.95 0 TCGA-FP-7829-01 FAT2 chr5 151528961 151525891 - G 1 0.75714238577643 1 DEL 1 Missense_Mutation 69 0.347826086956522 0 TCGA-FP-7829-01 TRPS1 chr8 115418934 115414880 G A 1 0.85069311748531 1 DEL 1 Missense_Mutation 207 0.265700483091787 0 TCGA-FP-7829-01 DCLK1 chr13 36125975 36125791 T C 1 0.655718407574287 1 DEL 1 Missense_Mutation 114 0.184210526315789 0 TCGA-FP-7829-01 TP53 chr17 7675958 7675085 C A 1 0.891707009365253 1 DEL 1 Missense_Mutation 56 0.696428571428571 0 TCGA-FP-7829-01 KIF2B chr17 53834246 53824543 C T 1 0.81835729114678 1 DEL 1 Missense_Mutation 52 0.480769230769231 0 TCGA-FP-7829-01 SMAD4 chr18 51072886 51065534 C T 1 0.74595853128276 1 DEL 1 Missense_Mutation 32 0.625 0 TCGA-FP-7829-01 MUC16 chr19 8905460 8904693 T A 0.98 0.739252023234751 1 DEL 1 Missense_Mutation 143 0.328671328671329 0 TCGA-FP-7829-01 ZNF536 chr19 30549365 30548402 G - 1 0.815843785784517 1 DEL 1 Missense_Mutation 260 0.269230769230769 0 TCGA-BR-4187-01 COL11A1 chr1 102891623 102886969 C A 0.36 0.20750176276126 0.585210603251157 DEL 0 Nonsense_Mutation 162 0.0802469135802469 1 TCGA-BR-4187-01 USH2A chr1 215903010 215900144 G A 0.47 0.258670803602684 0.813083165313873 DEL 0 Nonsense_Mutation 94 0.106382978723404 1 TCGA-BR-A4J7-01 COL11A1 chr1 102923326 102920348 G T 0.65 0.372877945804717 0.95879047102194 DEL 0 Nonsense_Mutation 117 0.102564102564103 1 TCGA-BR-A4J7-01 TTN chr2 178790120 178782237 C T 0.53 0.242925326083395 0.939514968843369 DEL 0 Nonsense_Mutation 72 0.0833333333333333 1 TCGA-VQ-A94T-01 TTN chr2 178559201 178551921 G T 1 0.919584444817388 1 DEL 1 Missense_Mutation 109 0.55045871559633 0 TCGA-VQ-A94T-01 MAP2 chr2 209702575 209696095 G A 0.7 0.43546997591648 0.961553753500197 DEL 0 Nonsense_Mutation 85 0.188235294117647 1 TCGA-VQ-A94T-01 FAT4 chr4 125480002 125476189 G A 1 0.924725337421012 1 DEL 1 Missense_Mutation 172 0.418604651162791 0 TCGA-BR-7959-01 THSD7B chr2 137103080 137095019 G A 1 0.524982148880869 1 DEL 1 Missense_Mutation 56 0.160714285714286 0 TCGA-BR-7959-01 LRP1B chr2 140853015 140850197 G A 1 0.715986139297475 1 DEL 1 Missense_Mutation 68 0.235294117647059 0 TCGA-BR-7959-01 CDH23 chr10 71681610 71677562 G A 1 0.8051668088852 1 DEL 0 Silent 33 0.545454545454545 0 TCGA-BR-7959-01 TENM4 chr11 78671173 78669704 C T 1 0.710501264392564 1 DEL 1 Missense_Mutation 169 0.153846153846154 0 TCGA-BR-7959-01 NAV3 chr12 78187452 78181042 T A 1 0.941726360958836 1 DEL 0 Silent 131 0.511450381679389 0 TCGA-BR-7959-01 TMEM132D chr12 129088604 129084607 G T 1 0.703875268372855 1 DEL 1 Missense_Mutation 115 0.156521739130435 0 TCGA-BR-7959-01 MUC16 chr19 8981893 8975835 A C 1 0.759424717591739 1 DEL 1 Missense_Mutation 74 0.256756756756757 0 TCGA-CD-A486-01 NRXN1 chr2 50061777 50053410 A G 1 0.852206859748391 1 DEL 1 Missense_Mutation 116 0.318965517241379 0 TCGA-CD-A486-01 LRP1B chr2 140342941 140334547 C T 1 0.626303079561096 1 DEL 1 Missense_Mutation 59 0.254237288135593 0 TCGA-CD-A486-01 TTN chr2 178662167 178652300 G A 0.83 0.620012287418499 0.982689058437335 DEL 1 Missense_Mutation 242 0.177685950413223 0 TCGA-CD-A486-01 TTN chr2 178724655 178722535 G A 0.63 0.351963613193746 0.949113603929601 DEL 0 Nonsense_Mutation 82 0.134146341463415 1 TCGA-CD-A486-01 CUBN chr10 16985022 16982558 G A 1 0.853122681866886 1 DEL 1 Missense_Mutation 77 0.402597402597403 0 TCGA-CD-A486-01 TP53 chr17 7677060 7675081 GAGCAGCGCTCATGGTGG - 1 0.695572590721689 1 DEL 1 Missense_Mutation 38 0.368421052631579 0 TCGA-R5-A7O7-01 COL11A1 chr1 102972220 102962681 G A 1 0.66935251186225 1 DEL 1 Missense_Mutation 100 0.21 0 TCGA-R5-A7O7-01 DNAH5 chr5 13833531 13830672 A T 1 0.617112983309296 1 DEL 1 Missense_Mutation 221 0.085972850678733 0 TCGA-R5-A7O7-01 SYNE1 chr6 152222835 152213653 C T 0.81 0.555003599019467 0.982635923274574 DEL 1 Missense_Mutation 182 0.148351648351648 0 TCGA-R5-A7O7-01 SYNE1 chr6 152489627 152483105 G A 1 0.836670119520932 1 DEL 1 Missense_Mutation 255 0.227450980392157 0 TCGA-R5-A7O7-01 TG chr8 132968871 132967961 C T 1 0.736648083512288 1 DEL 1 Missense_Mutation 42 0.357142857142857 0 TCGA-R5-A7O7-01 DNAH3 chr16 21071595 21062640 C T 0.69 0.346218530860749 0.97504699852079 DEL 1 Missense_Mutation 63 0.126984126984127 0 TCGA-R5-A7O7-01 TP53 chr17 7681166 7673821 G C 1 0.694410215456495 1 DEL 1 Missense_Mutation 22 0.5 0 TCGA-R5-A7O7-01 DSEL chr18 67515359 67513225 T G 1 0.693175070918934 1 DEL 1 Missense_Mutation 60 0.3 0 TCGA-VQ-A91U-01 ERBB4 chr2 211950502 211947534 C T 0.76 0.334181433793078 0.982767309838938 DEL 1 Missense_Mutation 44 0.136363636363636 0 TCGA-VQ-A91U-01 APC chr5 112829361 112828914 C T 1 0.903993589154296 1 DEL 1 Missense_Mutation 67 0.656716417910448 0 TCGA-VQ-A91U-01 SYNE1 chr6 152336589 152331130 C T 1 0.70672246048383 1 DEL 1 Missense_Mutation 169 0.218934911242604 0 TCGA-VQ-A91U-01 GLI3 chr7 42034472 42025302 C T 1 0.891508059398664 1 DEL 1 Missense_Mutation 114 0.394736842105263 0 TCGA-VQ-A91U-01 RIMS2 chr8 103890874 103885941 T G 0.97 0.524663120508121 1 DEL 1 Missense_Mutation 115 0.11304347826087 0 TCGA-VQ-A91U-01 TAF1L chr9 32640725 32632525 G T 1 0.753490487949977 1 DEL 1 Missense_Mutation 297 0.181818181818182 0 TCGA-VQ-A91U-01 DYNC2H1 chr11 103409777 103399802 A T 1 0.810268501106492 1 DEL 1 Missense_Mutation 58 0.396551724137931 0 TCGA-VQ-A91U-01 NBEA chr13 35073797 35070755 G T 0.79 0.452136023601025 0.984303299055997 DEL 1 Missense_Mutation 141 0.0921985815602837 0 TCGA-VQ-A91U-01 TP53 chr17 7672241 7670685 G - 1 0.809367196142819 1 DEL 1 Missense_Mutation 35 0.571428571428571 0 TCGA-VQ-A91U-01 SMAD4 chr18 51075348 51065548 C T 1 0.861769502809797 1 DEL 1 Missense_Mutation 52 0.596153846153846 0 TCGA-VQ-A91U-01 DSEL chr18 67517884 67513083 C T 1 0.618727946900371 1 DEL 1 Missense_Mutation 79 0.20253164556962 0 TCGA-D7-A6EV-01 APOB chr2 21013510 21008614 C A 1 0.784530225701647 1 DEL 1 Missense_Mutation 127 0.220472440944882 0 TCGA-D7-A6EV-01 LRP1B chr2 141233426 141229373 A T 1 0.373077190770263 1 DEL 1 Missense_Mutation 37 0.135135135135135 0 TCGA-D7-A6EV-01 TTN chr2 178707679 178704710 A G 1 0.30595000021554 1 DEL 1 Missense_Mutation 17 0.176470588235294 0 TCGA-D7-A6EV-01 DNAH7 chr2 195963309 195960446 T A 1 0.898480656677137 1 DEL 1 Missense_Mutation 152 0.302631578947368 0 TCGA-D7-A6EV-01 DOCK2 chr5 170017696 170008572 G A 1 0.840619960135949 1 DEL 0 Silent 41 0.560975609756098 0 TCGA-D7-A6EV-01 CSMD3 chr8 112658524 112656315 A C 1 0.682716561129532 1 DEL 1 Missense_Mutation 70 0.185714285714286 0 TCGA-D7-A6EV-01 TG chr8 132871728 132869746 A C 0.79 0.361364145603644 0.984449314412493 DEL 1 Missense_Mutation 88 0.0795454545454545 0 TCGA-D7-A6EV-01 TENM4 chr11 78716789 78712662 C T 1 0.962328329433846 1 DEL 0 Silent 119 0.840336134453782 0 TCGA-D7-A6EV-01 FAT3 chr11 92355951 92354970 C A 1 0.708682372419912 1 DEL 1 Missense_Mutation 114 0.157894736842105 0 TCGA-D7-A6EV-01 TP53 chr17 7676531 7675077 G T 1 0.870260390431754 1 DEL 0 Silent 51 0.568627450980392 0 TCGA-D7-A6EV-01 SMAD4 chr18 51079759 51078320 T G 1 0.460605375124986 1 DEL 1 Missense_Mutation 36 0.194444444444444 0 TCGA-D7-A6EV-01 MUC16 chr19 8948606 8945734 G T 1 0.77449522242727 1 DEL 1 Missense_Mutation 59 0.322033898305085 0 TCGA-VQ-A8PH-01 COL11A1 chr1 103092100 103082856 T A 1 0.905753010648626 1 DEL 1 Missense_Mutation 112 0.446428571428571 0 TCGA-VQ-A8PH-01 HMCN1 chr1 186122940 186119794 C A 0.77 0.413342417549336 0.983093876317549 DEL 1 Missense_Mutation 68 0.147058823529412 0 TCGA-VQ-A8PH-01 TTN chr2 178561933 178560222 C G 1 0.638954562503112 1 DEL 1 Missense_Mutation 70 0.228571428571429 0 TCGA-VQ-A8PH-01 TTN chr2 178566211 178565393 C G 1 0.693433622559692 1 DEL 1 Missense_Mutation 117 0.213675213675214 0 TCGA-VQ-A8PH-01 ADGRV1 chr5 90638506 90629316 T A 1 0.708103393076785 1 DEL 1 Missense_Mutation 22 0.545454545454545 0 TCGA-VQ-A8PH-01 DOCK2 chr5 169804984 169803110 G - 1 0.84734360420791 1 DEL 1 Missense_Mutation 53 0.528301886792453 0 TCGA-VQ-A8PH-01 UTRN chr6 144831083 144827368 T A 1 0.740991718137009 1 DEL 1 Missense_Mutation 35 0.428571428571429 0 TCGA-VQ-A8PH-01 DNAH11 chr7 21570140 21564189 T C 1 0.832825903200647 1 DEL 1 Missense_Mutation 73 0.342465753424658 0 TCGA-VQ-A8PH-01 PCDH15 chr10 54371917 54369265 T G 1 0.87300773819183 1 DEL 1 Missense_Mutation 59 0.542372881355932 0 TCGA-VQ-A8PH-01 NAV3 chr12 78126496 78119459 G A 0.42 0.17949421054035 0.869486451041442 DEL 0 Nonsense_Mutation 75 0.0666666666666667 1 TCGA-VQ-A8PH-01 TP53 chr17 7675272 7674188 C A 1 0.769203894641176 1 DEL 1 Missense_Mutation 33 0.515151515151515 0 TCGA-VQ-A8PH-01 LAMA1 chr18 7041364 7036021 C A 1 0.824384494947045 1 DEL 1 Missense_Mutation 41 0.536585365853659 0 TCGA-VQ-A8PH-01 RYR1 chr19 38520201 38510720 C A 1 0.866885652315531 1 DEL 1 Missense_Mutation 122 0.319672131147541 0 TCGA-BR-8678-01 LRP1B chr2 140278875 140274425 T C 1 0.873518525345516 1 DEL 1 Missense_Mutation 72 0.472222222222222 0 TCGA-BR-8678-01 LRP1B chr2 140315769 140315081 G C 1 0.757324036556437 1 DEL 1 Missense_Mutation 57 0.333333333333333 0 TCGA-BR-8678-01 LRP1B chr2 140716344 140716081 T A 0.49 0.275816920017844 0.830676464148107 DEL 0 Nonsense_Mutation 123 0.0894308943089431 1 TCGA-BR-8678-01 LRP1B chr2 141067119 141062079 T - 1 0.898835098410015 1 DEL 1 Missense_Mutation 124 0.395161290322581 0 TCGA-BR-8678-01 NEB chr2 151576577 151568679 G A 0.69 0.218631290358708 0.979010078818071 DEL 1 Missense_Mutation 24 0.125 0 TCGA-BR-8678-01 TTN chr2 178600353 178599602 C A 1 0.960141748482141 1 DEL 1 Missense_Mutation 298 0.426174496644295 0 TCGA-BR-8678-01 SCN10A chr3 38708911 38707322 T G 1 0.780584757157374 1 DEL 1 Missense_Mutation 93 0.279569892473118 0 TCGA-BR-8678-01 DNAH11 chr7 21620250 21615270 C T 0.83 0.422696620817187 0.986584851335616 DEL 1 Missense_Mutation 49 0.183673469387755 0 TCGA-BR-8678-01 MUC17 chr7 101043894 101037172 C T 0.98 0.765949317976492 1 DEL 1 Missense_Mutation 328 0.216463414634146 0 TCGA-BR-8678-01 TENM4 chr11 78676172 78669866 C T 1 0.831625550371257 1 DEL 1 Missense_Mutation 33 0.636363636363636 0 TCGA-BR-8678-01 DCLK1 chr13 36116531 36112111 G A 0.91 0.612258566720412 1 DEL 1 Missense_Mutation 222 0.121621621621622 0 TCGA-BR-8678-01 TP53 chr17 7681744 7676088 G C 1 0.912033496492647 1 DEL 1 Missense_Mutation 71 0.647887323943662 0 TCGA-BR-8384-01 PXDN chr2 1683698 1673775 A C 0.67 0.393498764289269 0.964078178631762 DEL 0 Nonsense_Mutation 128 0.1015625 1 TCGA-BR-8384-01 CSMD3 chr8 112955461 112947871 T A 1 0.466077636075809 1 DEL 1 Missense_Mutation 57 0.140350877192982 0 TCGA-D7-A6EZ-01 ARID1A chr1 26777313 26773660 C A 1 0.951254148709798 1 DEL 1 Missense_Mutation 153 0.640522875816993 0 TCGA-D7-A6EZ-01 OBSCN chr1 228300801 228293536 G A 0.95 0.694298168038642 1 DEL 1 Missense_Mutation 127 0.299212598425197 0 TCGA-D7-A6EZ-01 XIRP2 chr2 167253705 167251933 C G 0.93 0.604191841513796 1 DEL 1 Missense_Mutation 72 0.291666666666667 0 TCGA-D7-A6EZ-01 MAP2 chr2 209718027 209710193 A C 0.8 0.325942785686756 0.984209338645851 DEL 1 Missense_Mutation 20 0.25 0 TCGA-D7-A6EZ-01 ABCA12 chr2 214967085 214966935 C T 0.92 0.67169169404167 1 DEL 1 Missense_Mutation 124 0.290322580645161 0 TCGA-D7-A6EZ-01 CTNNB1 chr3 41225582 41224622 C G 1 0.89581028472532 1 DEL 1 Missense_Mutation 54 0.722222222222222 0 TCGA-D7-A6EZ-01 PIK3CA chr3 179210288 179209663 C T 0.63 0.456574738133993 0.833694358382355 DEL 0 Nonsense_Mutation 240 0.15 1 TCGA-D7-A6EZ-01 DNAH5 chr5 13724425 13717421 T G 0.48 0.24643468338119 0.84471161204398 DEL 0 Nonsense_Mutation 53 0.150943396226415 1 TCGA-D7-A6EZ-01 RIMS1 chr6 72318398 72313654 G A 1 0.585697772315604 1 DEL 1 Missense_Mutation 20 0.45 0 TCGA-D7-A6EZ-01 COL12A1 chr6 75156615 75156308 G A 1 0.841405937219715 1 DEL 1 Missense_Mutation 173 0.364161849710983 0 TCGA-D7-A6EZ-01 SDK1 chr7 4079384 4077120 G A 0.91 0.57263144705741 1 DEL 1 Missense_Mutation 63 0.285714285714286 0 TCGA-D7-A6EZ-01 GLI3 chr7 41970060 41965940 C T 0.96 0.604474525231778 1 DEL 1 Missense_Mutation 63 0.301587301587302 0 TCGA-D7-A6EZ-01 ZFHX4 chr8 76860109 76852524 C T 0.76 0.314172078517642 0.982187403410694 DEL 1 Missense_Mutation 21 0.238095238095238 0 TCGA-D7-A6EZ-01 FAT3 chr11 92362874 92354843 G C 0.9 0.642755054008222 1 DEL 1 Missense_Mutation 109 0.284403669724771 0 TCGA-D7-A6EZ-01 EPB41L3 chr18 5438792 5433966 C T 0.92 0.751812849095362 1 DEL 1 Missense_Mutation 163 0.423312883435583 0 TCGA-R5-A7ZF-01 ABCA12 chr2 215055762 215052539 G A 0.64 0.33620286949451 0.962848841241094 DEL 0 Nonsense_Mutation 78 0.115384615384615 1 TCGA-R5-A7ZF-01 APC chr5 112847402 112838797 C A 1 0.462019241214937 1 DEL 1 Missense_Mutation 43 0.186046511627907 0 TCGA-R5-A7ZF-01 TP53 chr17 7677950 7674939 C A 1 0.671428882238278 1 DEL 1 Missense_Mutation 50 0.28 0 TCGA-R5-A7ZF-01 SMAD4 chr18 51052311 51048832 C A 0.43 0.184435777452689 0.872658330250357 DEL 0 Nonsense_Mutation 53 0.0943396226415094 1 TCGA-R5-A7ZF-01 MUC16 chr19 8973282 8964466 C T 1 0.573509554094247 1 DEL 1 Missense_Mutation 49 0.224489795918367 0 TCGA-3M-AB47-01 PXDN chr2 1668613 1660914 A T 0.71 0.318115444527378 0.979146930346609 DEL 1 Missense_Mutation 43 0.13953488372093 0 TCGA-3M-AB47-01 LRP1B chr2 140326683 140323896 C A 0.59 0.284416428769948 0.953600941570401 DEL 0 Nonsense_Mutation 61 0.114754098360656 1 TCGA-3M-AB47-01 LRP1B chr2 140910217 140903022 G T 0.5 0.214973828874221 0.93400687829814 DEL 0 Nonsense_Mutation 51 0.0980392156862745 1 TCGA-3M-AB47-01 FAT4 chr4 125456872 125451658 T G 1 0.630760086009883 1 DEL 1 Missense_Mutation 84 0.214285714285714 0 TCGA-3M-AB47-01 PCDH10 chr4 133159805 133152202 G A 0.89 0.303968586209658 0.98654830284998 DEL 1 Missense_Mutation 23 0.173913043478261 0 TCGA-3M-AB47-01 CMYA5 chr5 79731607 79731143 C T 0.9 0.443665430488291 0.989352819561977 DEL 1 Missense_Mutation 61 0.147540983606557 0 TCGA-3M-AB47-01 COL12A1 chr6 75132725 75132026 C T 1 0.662403981445949 1 DEL 1 Missense_Mutation 76 0.236842105263158 0 TCGA-3M-AB47-01 ZFHX4 chr8 76715478 76705973 G A 1 0.617623645840192 1 DEL 1 Missense_Mutation 52 0.230769230769231 0 TCGA-3M-AB47-01 NAV3 chr12 78190726 78190125 C A 0.85 0.363053476823036 0.986750737874784 DEL 1 Missense_Mutation 36 0.166666666666667 0 TCGA-3M-AB47-01 LAMA1 chr18 6991351 6985330 A T 0.56 0.343061031496792 0.871670933632599 DEL 0 Nonsense_Mutation 136 0.110294117647059 1 TCGA-3M-AB47-01 LAMA1 chr18 6994121 6986187 C T 1 0.766911261838401 1 DEL 1 Missense_Mutation 87 0.28735632183908 0 TCGA-3M-AB47-01 LAMA1 chr18 7045925 7038885 G T 1 0.704663938688705 1 DEL 1 Missense_Mutation 97 0.237113402061856 0 TCGA-CD-5804-01 MAP2 chr2 209701070 209695888 G C 0.82 0.448158934871531 0.986326269496376 DEL 1 Missense_Mutation 67 0.164179104477612 0 TCGA-CD-5804-01 DNAH5 chr5 13761990 13753494 C A 0.85 0.572451351456543 0.988352982590978 DEL 1 Missense_Mutation 176 0.142045454545455 0 TCGA-CD-5804-01 ADGRB3 chr6 69370186 69360896 G A 0.48 0.261177094507735 0.831570353495053 DEL 0 Nonsense_Mutation 125 0.08 1 TCGA-CD-5804-01 TMEM132D chr12 129083427 129074027 A G 0.65 0.371299266922759 0.954629493562209 DEL 0 Nonsense_Mutation 93 0.129032258064516 1 TCGA-CD-5804-01 TP53 chr17 7679513 7670700 G A 1 0.782773475039469 1 DEL 1 Missense_Mutation 43 0.441860465116279 0 TCGA-CD-5804-01 DNAH9 chr17 11638255 11629474 G A 0.76 0.507291275781345 0.973906573447388 DEL 0 Nonsense_Mutation 152 0.151315789473684 1 TCGA-CD-5804-01 SMAD4 chr18 51068643 51065455 G A 0.69 0.452403991439229 0.949740831842406 DEL 0 Nonsense_Mutation 116 0.172413793103448 1 TCGA-BR-8297-01 SPTA1 chr1 158614863 158613757 T C 0.83 0.426651573200693 0.986637078938276 DEL 1 Missense_Mutation 154 0.0649350649350649 0 TCGA-BR-8297-01 SPTA1 chr1 158644370 158636756 T G 1 0.796960390211901 1 DEL 1 Missense_Mutation 339 0.109144542772861 0 TCGA-BR-8297-01 SPTA1 chr1 158652972 158645223 G A 1 0.794119205662879 1 DEL 1 Missense_Mutation 433 0.0993071593533487 0 TCGA-BR-8297-01 SPTA1 chr1 158686843 158681541 A G 1 0.773428368092539 1 DEL 1 Missense_Mutation 829 0.0808202653799759 0 TCGA-BR-8297-01 HMCN1 chr1 186027572 186023110 C A 0.76 0.446111774209255 0.981445017090386 DEL 1 Missense_Mutation 215 0.0651162790697674 0 TCGA-BR-8297-01 OBSCN chr1 228254666 228246695 G A 0.99 0.661486394813994 1 DEL 1 Missense_Mutation 368 0.0842391304347826 0 TCGA-BR-8297-01 FMN2 chr1 240395011 240392524 A C 0.78 0.481516338052013 0.983006694331709 DEL 1 Missense_Mutation 254 0.0669291338582677 0 TCGA-BR-8297-01 APOB chr2 21019813 21011337 G A 1 0.889114913037306 1 DEL 1 Missense_Mutation 380 0.152631578947368 0 TCGA-BR-8297-01 CNTNAP5 chr2 124511703 124504443 T C 1 0.75112969833587 1 DEL 1 Missense_Mutation 185 0.12972972972973 0 TCGA-BR-8297-01 NCKAP5 chr2 133218595 133213730 T G 1 0.500838635011323 1 DEL 1 Missense_Mutation 73 0.10958904109589 0 TCGA-BR-8297-01 LRP1B chr2 140909837 140907936 T C 0.71 0.467184439646955 0.963356645866352 DEL 0 Nonsense_Mutation 363 0.0606060606060606 1 TCGA-BR-8297-01 LRP1B chr2 140999417 140989654 T G 0.87 0.523668060968205 0.989415635524373 DEL 1 Missense_Mutation 229 0.074235807860262 0 TCGA-BR-8297-01 XIRP2 chr2 166911974 166903823 T G 0.75 0.448674236537345 0.979506618002382 DEL 1 Missense_Mutation 234 0.0641025641025641 0 TCGA-BR-8297-01 TTN chr2 178612408 178605443 G A 1 0.855741517802181 1 DEL 1 Missense_Mutation 182 0.192307692307692 0 TCGA-BR-8297-01 ABCA12 chr2 214953157 214947517 A C 1 0.604257458646512 1 DEL 1 Missense_Mutation 200 0.09 0 TCGA-BR-8297-01 FAT4 chr4 125459001 125451564 A C 0.89 0.616354789954556 1 DEL 1 Missense_Mutation 422 0.0758293838862559 0 TCGA-BR-8297-01 FAT4 chr4 125491316 125490148 G T 1 0.873360908137629 1 DEL 1 Missense_Mutation 240 0.179166666666667 0 TCGA-BR-8297-01 DCHS2 chr4 154242184 154235912 TCCAAGGGAGTAAAGAATGAC - 1 0.676608459423719 1 DEL 1 Missense_Mutation 309 0.0906148867313916 0 TCGA-BR-8297-01 DNAH5 chr5 13740306 13735924 G A 0.76 0.455375098620845 0.981229078453211 DEL 1 Missense_Mutation 230 0.0652173913043478 0 TCGA-BR-8297-01 CMYA5 chr5 79740199 79738587 A C 1 0.685640738778456 1 DEL 1 Missense_Mutation 193 0.113989637305699 0 TCGA-BR-8297-01 DOCK2 chr5 170064104 170056728 C G 0.87 0.427014142001075 0.988249847031654 DEL 1 Missense_Mutation 111 0.0810810810810811 0 TCGA-BR-8297-01 SYNE1 chr6 152400090 152396943 A T 0.69 0.421825537757183 0.96538622534255 DEL 0 Nonsense_Mutation 272 0.0588235294117647 1 TCGA-BR-8297-01 DNAH11 chr7 21724728 21720808 T G 1 0.670931779905984 1 DEL 1 Missense_Mutation 54 0.203703703703704 0 TCGA-BR-8297-01 GLI3 chr7 42079521 42076770 G A 1 0.621173180230399 1 DEL 1 Missense_Mutation 188 0.0904255319148936 0 TCGA-BR-8297-01 PCLO chr7 82961642 82955877 A C 1 0.788676510952895 1 DEL 1 Missense_Mutation 156 0.153846153846154 0 TCGA-BR-8297-01 RELN chr7 103571454 103566756 A C 1 0.684887873694603 1 DEL 1 Missense_Mutation 228 0.0964912280701754 0 TCGA-BR-8297-01 CSMD1 chr8 2950491 2949308 C G 0.68 0.279056346818388 0.978136921144562 DEL 1 Missense_Mutation 93 0.0537634408602151 0 TCGA-BR-8297-01 RIMS2 chr8 104253462 104251714 T - 1 0.893521115165792 1 DEL 1 Missense_Mutation 573 0.115183246073298 0 TCGA-BR-8297-01 CSMD3 chr8 112582246 112573605 G T 0.75 0.491684275701699 0.975826264125874 DEL 1 Missense_Mutation 431 0.0510440835266821 0 TCGA-BR-8297-01 TRPS1 chr8 115629147 115619773 T G 0.74 0.461719469242873 0.975737041386834 DEL 1 Missense_Mutation 359 0.0501392757660167 0 TCGA-BR-8297-01 TAF1L chr9 32638446 32633781 C T 1 0.971402052982262 1 DEL 0 Silent 527 0.318785578747628 0 TCGA-BR-8297-01 TLR4 chr9 117720390 117713620 T G 1 0.806799345503407 1 DEL 1 Missense_Mutation 190 0.152631578947368 0 TCGA-BR-8297-01 LRRK2 chr12 40273176 40263846 A C 0.73 0.430551927574665 0.97732375714245 DEL 1 Missense_Mutation 224 0.0625 0 TCGA-BR-8297-01 SACS chr13 23340249 23333716 A C 0.88 0.520489496286706 0.989742833997261 DEL 1 Missense_Mutation 177 0.0903954802259887 0 TCGA-BR-8297-01 DCLK1 chr13 36117311 36112029 A G 0.99 0.674296210625995 1 DEL 1 Missense_Mutation 323 0.102167182662539 0 TCGA-BR-8297-01 TP53 chr17 7684237 7675088 C T 1 0.901188271482381 1 DEL 1 Missense_Mutation 165 0.278787878787879 0 TCGA-BR-8297-01 KIF2B chr17 53828408 53824540 C A 0.85 0.435941650587677 0.987696860913716 DEL 1 Missense_Mutation 138 0.072463768115942 0 TCGA-BR-8297-01 MUC16 chr19 8958474 8956816 T G 0.73 0.469633131302337 0.971577502647148 DEL 1 Missense_Mutation 294 0.0680272108843537 0 TCGA-CD-8534-01 RYR2 chr1 237456910 237454537 G T 0.72 0.363100757001768 0.977640430291014 DEL 0 Nonsense_Mutation 41 0.195121951219512 1 TCGA-CD-8534-01 RYR2 chr1 237603126 237602053 C T 0.32 0.112474796098677 0.816204341139272 DEL 0 Nonsense_Mutation 34 0.0882352941176471 1 TCGA-CD-8534-01 SYNE1 chr6 152399264 152390287 C T 0.86 0.533716925392341 0.988595941387763 DEL 1 Missense_Mutation 73 0.232876712328767 0 TCGA-CD-8534-01 CSMD3 chr8 112306753 112306123 G A 0.79 0.498505064396795 0.982524239309437 DEL 1 Missense_Mutation 79 0.215189873417722 0 TCGA-BR-8080-01 SPTA1 chr1 158634072 158626208 T G 1 0.694929179804832 1 DEL 1 Missense_Mutation 48 0.25 0 TCGA-BR-8080-01 SPTA1 chr1 158641180 158636756 T G 1 0.861866042448935 1 DEL 1 Missense_Mutation 143 0.237762237762238 0 TCGA-BR-8080-01 LRP1B chr2 140245384 140238168 A C 1 0.547568432098782 1 DEL 1 Missense_Mutation 116 0.103448275862069 0 TCGA-BR-8080-01 LRP1B chr2 140336873 140335669 A G 0.74 0.360956632915263 0.980893419134825 DEL 1 Missense_Mutation 116 0.0689655172413793 0 TCGA-BR-8080-01 TTN chr2 178551625 178548444 C T 0.61 0.363593536008278 0.935966806447293 DEL 0 Nonsense_Mutation 267 0.052434456928839 1 TCGA-BR-8080-01 TTN chr2 178563901 178559954 T G 0.88 0.388238720451812 0.987906439885767 DEL 1 Missense_Mutation 93 0.0752688172043011 0 TCGA-BR-8080-01 TTN chr2 178575234 178574460 A G 0.92 0.638247592091082 1 DEL 1 Missense_Mutation 418 0.0789473684210526 0 TCGA-BR-8080-01 TTN chr2 178744578 178735853 A G 1 0.648378327263992 1 DEL 1 Missense_Mutation 78 0.153846153846154 0 TCGA-BR-8080-01 CTNND2 chr5 11028381 11022824 G A 1 0.560141677896278 1 DEL 1 Missense_Mutation 63 0.142857142857143 0 TCGA-BR-8080-01 CSMD1 chr8 2982420 2974519 A T 1 0.3956896717846 1 DEL 1 Missense_Mutation 21 0.19047619047619 0 TCGA-BR-8080-01 CSMD3 chr8 112409336 112408957 T C 0.84 0.444384452601176 0.987230898248867 DEL 1 Missense_Mutation 180 0.0611111111111111 0 TCGA-BR-8080-01 CSMD3 chr8 112594682 112587187 G A 0.73 0.373508103047739 0.97990251308302 DEL 1 Missense_Mutation 144 0.0625 0 TCGA-BR-8080-01 CUBN chr10 16878694 16876919 G C 1 0.622377178418536 1 DEL 1 Missense_Mutation 84 0.142857142857143 0 TCGA-BR-8080-01 NALCN chr13 101075071 101065432 C T 1 0.856367567827289 1 DEL 0 Silent 95 0.305263157894737 0 TCGA-BR-8080-01 NALCN chr13 101105543 101095590 A G 1 0.786622600486069 1 DEL 1 Missense_Mutation 72 0.263888888888889 0 TCGA-BR-8080-01 TP53 chr17 7676361 7670676 T C 1 0.680073081414549 1 DEL 0 Silent 28 0.357142857142857 0 TCGA-BR-8080-01 MUC16 chr19 8984204 8977139 T C 1 0.676620441503805 1 DEL 1 Missense_Mutation 66 0.196969696969697 0 TCGA-BR-8080-01 ZNF208 chr19 21978255 21972579 T A 1 0.521815982484966 1 DEL 1 Missense_Mutation 110 0.1 0 TCGA-CG-4440-01 FLG chr1 152315857 152315394 T - 0.69 0.455355568474513 0.954009061831843 DEL 0 Nonsense_Mutation 181 0.116022099447514 1 TCGA-CG-4440-01 FMN2 chr1 240211632 240206799 G A 0.56 0.285629202170202 0.938090023840957 DEL 0 Nonsense_Mutation 85 0.0941176470588235 1 TCGA-CG-4440-01 NCKAP5 chr2 132787806 132783198 C T 1 0.926737168711538 1 DEL 1 Missense_Mutation 142 0.443661971830986 0 TCGA-CG-4440-01 SCN10A chr3 38765160 38755816 C T 1 0.971685731688942 1 DEL 1 Missense_Mutation 296 0.560810810810811 0 TCGA-CG-4440-01 SYNE1 chr6 152399723 152391494 C T 0.9 0.573519937705641 1 DEL 1 Missense_Mutation 110 0.181818181818182 0 TCGA-CG-4440-01 PCLO chr7 82961605 82955440 G A 1 0.814066460068762 1 DEL 1 Missense_Mutation 628 0.121019108280255 0 TCGA-CG-4440-01 NAV3 chr12 78198147 78188253 A C 0.9 0.593955314233736 1 DEL 1 Missense_Mutation 159 0.150943396226415 0 TCGA-CG-4440-01 AHNAK2 chr14 104947088 104938928 G C 0.73 0.322933292321374 0.981105000756914 DEL 1 Missense_Mutation 57 0.105263157894737 0 TCGA-CG-4440-01 AHNAK2 chr14 104946829 104943724 C A 1 0.964477299494087 1 DEL 1 Missense_Mutation 537 0.309124767225326 0 TCGA-CG-4440-01 TP53 chr17 7681635 7674240 G - 1 0.882755285048013 1 DEL 1 Missense_Mutation 95 0.431578947368421 0 TCGA-D7-8579-01 ARID1A chr1 26775240 26773866 C T 0.79 0.563656188308665 0.979180212122269 DEL 1 Missense_Mutation 360 0.0916666666666667 0 TCGA-D7-8579-01 FLG chr1 152313632 152308324 T G 1 0.845270446505611 1 DEL 1 Missense_Mutation 634 0.132492113564669 0 TCGA-D7-8579-01 RYR2 chr1 237656692 237654355 G T 0.79 0.277427789147461 0.983612660414373 DEL 1 Missense_Mutation 44 0.0909090909090909 0 TCGA-D7-8579-01 DCHS2 chr4 154243201 154235992 A G 1 0.451941196661488 1 DEL 1 Missense_Mutation 68 0.117647058823529 0 TCGA-D7-8579-01 DNAH11 chr7 21606577 21599964 A T 1 0.426101394735104 1 DEL 1 Missense_Mutation 49 0.122448979591837 0 TCGA-D7-8579-01 DNAH11 chr7 21621987 21619104 A C 1 0.729456717143673 1 DEL 1 Missense_Mutation 50 0.28 0 TCGA-D7-8579-01 GLI3 chr7 41969716 41966209 G A 1 0.450771319896593 1 DEL 1 Missense_Mutation 26 0.192307692307692 0 TCGA-D7-8579-01 PCLO chr7 82917705 82914906 T G 1 0.601252951000722 1 DEL 1 Missense_Mutation 85 0.141176470588235 0 TCGA-D7-8579-01 GRM5 chr11 88509549 88508599 G A 0.94 0.381086642697021 0.989021499492791 DEL 1 Missense_Mutation 55 0.109090909090909 0 TCGA-D7-8579-01 DCLK1 chr13 36129952 36125858 T G 1 0.800945851106269 1 DEL 1 Missense_Mutation 110 0.227272727272727 0 TCGA-D7-8579-01 LAMA1 chr18 6959986 6958573 A G 1 0.460704474143874 1 DEL 1 Missense_Mutation 51 0.137254901960784 0 TCGA-CG-5717-01 NCKAP5 chr2 132783163 132782293 A - 0.77 0.418478710310049 0.982902230609133 DEL 0 Nonsense_Mutation 146 0.0753424657534247 1 TCGA-CG-5717-01 TTN chr2 178736002 178732312 G A 0.78 0.465184774144299 0.983153017943714 DEL 0 Nonsense_Mutation 196 0.076530612244898 1 TCGA-CG-5717-01 TP53 chr17 7683417 7675085 C A 0.8 0.363062133101806 0.984742461888196 DEL 1 Missense_Mutation 90 0.0777777777777778 0 TCGA-B7-A5TJ-01 HMCN1 chr1 185867992 185864537 - GTTCTTTC 1 0.789506625998053 1 DEL 1 Missense_Mutation 43 0.465116279069767 0 TCGA-B7-A5TJ-01 HMCN1 chr1 185966066 185965819 G A 0.24 0.119500242692917 0.453531455310576 DEL 0 Nonsense_Mutation 150 0.0533333333333333 1 TCGA-B7-A5TJ-01 USH2A chr1 215682442 215674544 C T 1 0.746649920841607 1 DEL 1 Missense_Mutation 146 0.246575342465753 0 TCGA-B7-A5TJ-01 USH2A chr1 216254488 216246791 C T 1 0.868952626013759 1 DEL 1 Missense_Mutation 272 0.275735294117647 0 TCGA-B7-A5TJ-01 PXDN chr2 1675948 1666342 C T 1 0.729549132769824 1 DEL 1 Missense_Mutation 74 0.297297297297297 0 TCGA-B7-A5TJ-01 TTN chr2 178568023 178567287 T G 1 0.958258478047952 1 DEL 1 Missense_Mutation 249 0.48995983935743 0 TCGA-B7-A5TJ-01 TTN chr2 178714538 178714390 T G 0.25 0.10432905492612 0.546155992569209 DEL 0 Nonsense_Mutation 91 0.0549450549450549 1 TCGA-B7-A5TJ-01 ABCA12 chr2 214956744 214954073 A T 1 0.69461592594033 1 DEL 1 Missense_Mutation 130 0.230769230769231 0 TCGA-B7-A5TJ-01 COL6A3 chr2 237343852 237336524 G A 0.89 0.579121033086147 1 DEL 1 Missense_Mutation 112 0.196428571428571 0 TCGA-B7-A5TJ-01 DNAH5 chr5 13792241 13786229 C T 0.83 0.447076514084252 0.986997022421209 DEL 1 Missense_Mutation 42 0.238095238095238 0 TCGA-B7-A5TJ-01 FAT2 chr5 151570231 151568745 C T 0.99 0.747716295805832 1 DEL 1 Missense_Mutation 180 0.283333333333333 0 TCGA-B7-A5TJ-01 PREX2 chr8 68104988 68099782 T G 0.97 0.650965753222629 1 DEL 1 Missense_Mutation 125 0.216 0 TCGA-B7-A5TJ-01 FAM135B chr8 138154528 138153050 T G 1 0.923930059152974 1 DEL 1 Missense_Mutation 103 0.543689320388349 0 TCGA-B7-A5TJ-01 FAT3 chr11 92803282 92798348 A G 0.41 0.141926864937854 0.918712376921489 DEL 0 Nonsense_Mutation 33 0.0909090909090909 1 TCGA-B7-A5TJ-01 TP53 chr17 7682608 7675205 GTT - 1 0.896834039182034 1 DEL 1 Missense_Mutation 59 0.677966101694915 0 TCGA-B7-A5TJ-01 DNAH17 chr17 78570643 78561925 G A 1 0.72859020795827 1 DEL 1 Missense_Mutation 47 0.404255319148936 0 TCGA-B7-A5TJ-01 MUC16 chr19 8957221 8954840 A C 1 0.69472902579904 1 DEL 1 Missense_Mutation 40 0.4 0 TCGA-B7-A5TJ-01 MUC16 chr19 8970817 8960923 T C 0.2 0.0849505379136487 0.447566283375039 DEL 0 Nonsense_Mutation 86 0.0581395348837209 1 TCGA-B7-A5TJ-01 PEG3 chr19 56825107 56816661 C T 1 0.775651918811283 1 DEL 1 Missense_Mutation 53 0.433962264150943 0 TCGA-BR-6453-01 COL11A1 chr1 102887783 102879829 A C 0.97 0.440026244975733 1 DEL 1 Missense_Mutation 75 0.106666666666667 0 TCGA-BR-6453-01 LRP1B chr2 140497008 140492657 T C 0.78 0.464181167768362 0.982717762820134 DEL 1 Missense_Mutation 176 0.0852272727272727 0 TCGA-BR-6453-01 TTN chr2 178609805 178607408 T G 1 0.805181578212784 1 DEL 1 Missense_Mutation 164 0.182926829268293 0 TCGA-BR-6453-01 FAT4 chr4 125319141 125316418 T G 1 0.73342415042368 1 DEL 1 Missense_Mutation 250 0.128 0 TCGA-BR-6453-01 CSMD1 chr8 3095984 3091530 T G 0.77 0.331037429447148 0.983290588227912 DEL 1 Missense_Mutation 87 0.0689655172413793 0 TCGA-BR-6453-01 PREX2 chr8 68146478 68146234 A C 1 0.450537517365558 1 DEL 1 Missense_Mutation 87 0.0919540229885057 0 TCGA-BR-6453-01 TLR4 chr9 117717795 117713587 T G 1 0.544024458687654 1 DEL 1 Missense_Mutation 115 0.11304347826087 0 TCGA-BR-6453-01 CDH23 chr10 71790425 71784383 G A 1 0.478980876187708 1 DEL 1 Missense_Mutation 79 0.113924050632911 0 TCGA-BR-6453-01 DYNC2H1 chr11 103191873 103187543 T G 1 0.778820920443088 1 DEL 1 Missense_Mutation 103 0.213592233009709 0 TCGA-BR-6453-01 NBEA chr13 35572213 35566972 A C 1 0.625338501176484 1 DEL 1 Missense_Mutation 191 0.104712041884817 0 TCGA-BR-6453-01 NALCN chr13 101064845 101058025 G A 0.69 0.343383026375742 0.976407710243307 DEL 1 Missense_Mutation 117 0.0683760683760684 0 TCGA-BR-6453-01 KIF2B chr17 53830864 53824567 T G 1 0.488562551394555 1 DEL 1 Missense_Mutation 91 0.10989010989011 0 TCGA-BR-6453-01 LAMA1 chr18 7052404 7050780 T C 1 0.468006390617569 1 DEL 1 Missense_Mutation 67 0.119402985074627 0 TCGA-BR-6453-01 MUC16 chr19 8981902 8975339 A C 0.86 0.406118477611037 0.987663662009336 DEL 1 Missense_Mutation 85 0.0941176470588235 0 TCGA-VQ-A8DT-01 COL11A1 chr1 102889299 102879828 A G 0.47 0.229766796327259 0.87806512690239 DEL 0 Nonsense_Mutation 84 0.0833333333333333 1 TCGA-VQ-A8DT-01 SPTA1 chr1 158625976 158620183 G T 0.5 0.285990829965193 0.830845898465718 DEL 0 Nonsense_Mutation 160 0.075 1 TCGA-VQ-A8DT-01 APOB chr2 21020091 21010104 T G 0.59 0.286657530071252 0.956477139177589 DEL 0 Nonsense_Mutation 67 0.104477611940299 1 TCGA-VQ-A8DT-01 TTN chr2 178811603 178802246 C T 1 0.785192992739625 1 DEL 1 Missense_Mutation 86 0.290697674418605 0 TCGA-VQ-A8DT-01 SCN10A chr3 38728525 38726784 C A 0.91 0.445088081685098 0.98956714677039 DEL 1 Missense_Mutation 66 0.136363636363636 0 TCGA-VQ-A8DT-01 DCHS2 chr4 154321109 154320865 C T 0.52 0.220756737436916 0.942279007319393 DEL 0 Nonsense_Mutation 55 0.0909090909090909 1 TCGA-VQ-A8DT-01 DNAH5 chr5 13826416 13823336 A T 0.5 0.241260781853761 0.901850126209752 DEL 0 Nonsense_Mutation 80 0.0875 1 TCGA-VQ-A8DT-01 MUC17 chr7 101040457 101039179 G A 1 0.88197537051212 1 DEL 1 Missense_Mutation 480 0.133333333333333 0 TCGA-VQ-A8DT-01 CSMD1 chr8 2968015 2962487 C T 1 0.570687464652026 1 DEL 1 Missense_Mutation 49 0.183673469387755 0 TCGA-VQ-A8DT-01 PCDH15 chr10 54318763 54317296 G A 0.63 0.318471206137604 0.963433182617034 DEL 0 Nonsense_Mutation 72 0.111111111111111 1 TCGA-VQ-A8DT-01 FAT3 chr11 92807762 92799087 A C 1 0.699871609411166 1 DEL 1 Missense_Mutation 43 0.325581395348837 0 TCGA-VQ-A8DT-01 SACS chr13 23335673 23335083 - T 1 0.63877273270469 1 DEL 1 Missense_Mutation 151 0.139072847682119 0 TCGA-VQ-A8DT-01 TP53 chr17 7678760 7674945 G A 1 0.667342908985301 1 DEL 1 Missense_Mutation 37 0.324324324324324 0 TCGA-VQ-A8DT-01 DNAH9 chr17 11774006 11768514 T G 0.55 0.281206449703792 0.931952283011908 DEL 0 Nonsense_Mutation 82 0.0975609756097561 1 TCGA-CG-4462-01 SPTA1 chr1 158623753 158619246 A G 0.83 0.568592905808879 0.986233470423712 DEL 1 Missense_Mutation 311 0.090032154340836 0 TCGA-CG-4462-01 ADGRV1 chr5 90655572 90652407 G T 0.93 0.626978714927725 1 DEL 1 Missense_Mutation 288 0.100694444444444 0 TCGA-CG-4462-01 SLITRK5 chr13 87681090 87676194 G A 0.72 0.466492142569562 0.969452531868387 DEL 0 Nonsense_Mutation 255 0.0784313725490196 1 TCGA-BR-8365-01 ARID1A chr1 26737147 26731231 - A 1 0.806180201061036 1 DEL 1 Missense_Mutation 241 0.195020746887967 0 TCGA-VQ-AA64-01 RYR2 chr1 237620923 237614317 C T 1 0.838552306683103 1 DEL 0 Silent 46 0.478260869565217 0 TCGA-VQ-AA64-01 NCKAP5 chr2 132793979 132784462 C G 1 0.809473251922157 1 DEL 1 Missense_Mutation 135 0.207407407407407 0 TCGA-VQ-AA64-01 TTN chr2 178713238 178706611 T G 0.72 0.448246914270533 0.970694786786361 DEL 1 Missense_Mutation 163 0.104294478527607 0 TCGA-VQ-AA64-01 ABCA12 chr2 214958357 214951076 A C 1 0.742792636831239 1 DEL 1 Missense_Mutation 114 0.192982456140351 0 TCGA-VQ-AA64-01 SCN10A chr3 38704341 38697737 T G 1 0.646271271243423 1 DEL 1 Missense_Mutation 44 0.295454545454545 0 TCGA-VQ-AA64-01 CMYA5 chr5 79742362 79734960 C G 1 0.78572667202756 1 DEL 1 Missense_Mutation 93 0.258064516129032 0 TCGA-VQ-AA64-01 DOCK2 chr5 169722676 169714085 C A 1 0.672052811000248 1 DEL 1 Missense_Mutation 60 0.233333333333333 0 TCGA-VQ-AA64-01 DNAH11 chr7 21612067 21606685 T A 1 0.597212031283213 1 DEL 1 Missense_Mutation 24 0.333333333333333 0 TCGA-VQ-AA64-01 SLITRK5 chr13 87680645 87676566 G T 1 0.751477374602465 1 DEL 1 Missense_Mutation 29 0.482758620689655 0 TCGA-VQ-AA64-01 DNAH17 chr17 78501594 78496031 A C 1 0.801392693783336 1 DEL 1 Missense_Mutation 50 0.4 0 TCGA-VQ-AA64-01 MUC16 chr19 8904902 8898922 A G 1 0.748473185683072 1 DEL 1 Missense_Mutation 115 0.208695652173913 0 TCGA-CD-8524-01 RYR2 chr1 237431150 237423136 G A 1 0.636053167972604 1 DEL 1 Missense_Mutation 94 0.234042553191489 0 TCGA-CD-8524-01 LRP1B chr2 140492348 140485488 C T 1 0.632724385543201 1 DEL 1 Missense_Mutation 36 0.333333333333333 0 TCGA-CD-8524-01 TTN chr2 178776113 178775821 C T 1 0.892121603464637 1 DEL 1 Missense_Mutation 143 0.356643356643357 0 TCGA-CD-8524-01 ERBB4 chr2 211391933 211386940 G A 0.83 0.480733513382632 0.987068050781029 DEL 1 Missense_Mutation 67 0.194029850746269 0 TCGA-CD-8524-01 PCDH10 chr4 133154811 133152088 C A 0.68 0.307048758202427 0.975306509746816 DEL 0 Nonsense_Mutation 38 0.157894736842105 1 TCGA-CD-8524-01 PKHD1 chr6 52049365 52048569 G A 0.52 0.253162609147899 0.914333247959122 DEL 0 Nonsense_Mutation 58 0.120689655172414 1 TCGA-CD-8524-01 SDK1 chr7 4150999 4149325 G A 1 0.590167448947157 1 DEL 1 Missense_Mutation 12 0.583333333333333 0 TCGA-CD-8524-01 TLR4 chr9 117713716 117712768 C G 0.56 0.309850884291631 0.916584221217969 DEL 0 Nonsense_Mutation 76 0.131578947368421 1 TCGA-CD-8524-01 NAV3 chr12 78012504 78007421 C T 1 0.63674721500508 1 DEL 1 Missense_Mutation 88 0.238636363636364 0 TCGA-CD-8524-01 NAV3 chr12 78120172 78119309 C A 0.66 0.438452334372817 0.929961009844356 DEL 0 Nonsense_Mutation 136 0.154411764705882 1 TCGA-CD-8524-01 TP53 chr17 7675706 7674894 G A 0.77 0.312066534356064 0.982908261282379 DEL 1 Missense_Mutation 28 0.178571428571429 0 TCGA-D7-6822-01 FLG chr1 152311831 152310979 T C 0.92 0.76277989362695 1 DEL 1 Missense_Mutation 730 0.149315068493151 0 TCGA-D7-6822-01 FLG2 chr1 152361398 152356900 T G 0.54 0.410775389867996 0.698901916427681 DEL 0 Nonsense_Mutation 569 0.0878734622144113 1 TCGA-D7-6822-01 HMCN1 chr1 186056304 186055655 A C 0.89 0.62306010863468 1 DEL 1 Missense_Mutation 180 0.172222222222222 0 TCGA-D7-6822-01 HMCN1 chr1 186095607 186090916 C T 1 0.768746276597326 1 DEL 1 Missense_Mutation 137 0.240875912408759 0 TCGA-D7-6822-01 USH2A chr1 216203906 216196625 T G 0.97 0.662933374203483 1 DEL 1 Missense_Mutation 166 0.186746987951807 0 TCGA-D7-6822-01 USH2A chr1 216209085 216199648 A T 1 0.920782169271681 1 DEL 1 Missense_Mutation 148 0.425675675675676 0 TCGA-D7-6822-01 RYR2 chr1 237511119 237503372 T C 1 0.650362806754788 1 DEL 1 Missense_Mutation 94 0.212765957446809 0 TCGA-D7-6822-01 RYR2 chr1 237679024 237678099 A C 1 0.687414270873296 1 DEL 1 Missense_Mutation 50 0.3 0 TCGA-D7-6822-01 CNTNAP5 chr2 124765967 124764112 T G 1 0.798862555990723 1 DEL 1 Missense_Mutation 162 0.339506172839506 0 TCGA-D7-6822-01 TTN chr2 178534527 178527262 T A 1 0.587828794253641 1 DEL 1 Missense_Mutation 38 0.342105263157895 0 TCGA-D7-6822-01 TTN chr2 178604594 178601675 C A 0.76 0.569429210757242 0.953618510033609 DEL 0 Nonsense_Mutation 167 0.239520958083832 1 TCGA-D7-6822-01 TTN chr2 178640756 178635652 G T 1 0.65960272249975 1 DEL 1 Missense_Mutation 21 0.523809523809524 0 TCGA-D7-6822-01 TTN chr2 178727754 178718936 T G 1 0.571035066561586 1 DEL 1 Missense_Mutation 26 0.384615384615385 0 TCGA-D7-6822-01 TTN chr2 178736059 178730952 T G 1 0.859589912833186 1 DEL 1 Missense_Mutation 367 0.329700272479564 0 TCGA-D7-6822-01 TTN chr2 178783422 178779254 T C 1 0.786791226476685 1 DEL 1 Missense_Mutation 99 0.373737373737374 0 TCGA-D7-6822-01 MAP2 chr2 209700633 209696732 A C 1 0.767416068571811 1 DEL 1 Missense_Mutation 55 0.436363636363636 0 TCGA-D7-6822-01 ABCA12 chr2 214979815 214975927 G A 0.78 0.51049988098108 0.97996366179131 DEL 1 Missense_Mutation 77 0.246753246753247 0 TCGA-D7-6822-01 CTNNB1 chr3 41230375 41224622 C T 0.69 0.413644473413277 0.963405866418809 DEL 1 Missense_Mutation 85 0.164705882352941 0 TCGA-D7-6822-01 CTNNB1 chr3 41233964 41227287 C A 0.48 0.308706455182801 0.71692129088986 DEL 0 Nonsense_Mutation 165 0.115151515151515 1 TCGA-D7-6822-01 DCHS2 chr4 154339543 154329620 C T 1 0.790242103602257 1 DEL 1 Missense_Mutation 41 0.609756097560976 0 TCGA-D7-6822-01 ADGRB3 chr6 68965770 68956746 A C 0.91 0.662459061215825 1 DEL 1 Missense_Mutation 228 0.175438596491228 0 TCGA-D7-6822-01 RIMS1 chr6 72251875 72248020 A C 1 0.72940701929508 1 DEL 1 Missense_Mutation 225 0.195555555555556 0 TCGA-D7-6822-01 COL12A1 chr6 75113613 75109115 T C 1 0.687936182237467 1 DEL 1 Missense_Mutation 137 0.204379562043796 0 TCGA-D7-6822-01 UTRN chr6 144845694 144836411 C T 1 0.795652085841109 1 DEL 1 Missense_Mutation 205 0.263414634146341 0 TCGA-D7-6822-01 SYNE1 chr6 152326448 152318157 T G 1 0.737394342247541 1 DEL 1 Missense_Mutation 201 0.238805970149254 0 TCGA-D7-6822-01 PCLO chr7 82962391 82953218 T G 1 0.864219177395213 1 DEL 1 Missense_Mutation 216 0.365740740740741 0 TCGA-D7-6822-01 CSMD1 chr8 3000652 3000120 C T 1 0.768259673059456 1 DEL 1 Missense_Mutation 131 0.244274809160305 0 TCGA-D7-6822-01 TRPA1 chr8 72052838 72052661 A C 1 0.861714298043148 1 DEL 1 Missense_Mutation 277 0.245487364620939 0 TCGA-D7-6822-01 CSMD3 chr8 112238088 112231576 T G 0.94 0.746112278505801 1 DEL 1 Missense_Mutation 413 0.181598062953995 0 TCGA-D7-6822-01 CSMD3 chr8 112557220 112550866 A G 1 0.870500276311441 1 DEL 1 Missense_Mutation 90 0.411111111111111 0 TCGA-D7-6822-01 CSMD3 chr8 112651455 112650175 A C 0.96 0.69326258870246 1 DEL 1 Missense_Mutation 215 0.186046511627907 0 TCGA-D7-6822-01 TLR4 chr9 117720929 117712689 T G 1 0.735138599316724 1 DEL 1 Missense_Mutation 109 0.330275229357798 0 TCGA-D7-6822-01 NBEA chr13 35168631 35161820 C G 0.96 0.499259173312419 1 DEL 1 Missense_Mutation 33 0.303030303030303 0 TCGA-D7-6822-01 TP53 chr17 7682157 7673769 G - 1 0.91714571095938 1 DEL 1 Missense_Mutation 62 0.774193548387097 0 TCGA-D7-6822-01 ZNF536 chr19 30558107 30549253 A G 1 0.680830110331593 1 DEL 1 Missense_Mutation 99 0.222222222222222 0 TCGA-BR-4191-01 FLG chr1 152312826 152307607 C T 0.97 0.763106725534381 1 DEL 1 Missense_Mutation 260 0.261538461538462 0 TCGA-BR-4191-01 LRP2 chr2 169188120 169181548 A T 0.98 0.56346383633451 1 DEL 1 Missense_Mutation 72 0.208333333333333 0 TCGA-BR-4191-01 DNAH7 chr2 195901356 195891787 G T 1 0.578481621898018 1 DEL 1 Missense_Mutation 34 0.323529411764706 0 TCGA-BR-4191-01 APC chr5 112851017 112841531 C - 1 0.814547280469957 1 DEL 1 Missense_Mutation 51 0.490196078431373 0 TCGA-BR-4191-01 DOCK2 chr5 169716875 169714056 G A 0.3 0.115830311022281 0.693564958051954 DEL 0 Nonsense_Mutation 50 0.08 1 TCGA-BR-4191-01 PLXNA4 chr7 132517517 132508083 A C 0.8 0.477491727247779 0.984213629645136 DEL 1 Missense_Mutation 65 0.215384615384615 0 TCGA-BR-4191-01 CSMD3 chr8 112691371 112682606 C G 0.79 0.466310506852018 0.983923924950719 DEL 1 Missense_Mutation 101 0.138613861386139 0 TCGA-BR-4191-01 NAV3 chr12 78196164 78188332 C T 0.65 0.329456288974627 0.967359009463767 DEL 0 Nonsense_Mutation 58 0.137931034482759 1 TCGA-BR-4191-01 DNAH17 chr17 78512390 78505342 T C 0.79 0.387335030474758 0.98407156424701 DEL 1 Missense_Mutation 48 0.166666666666667 0 TCGA-BR-4183-01 SPTA1 chr1 158679499 158676224 C A 1 0.814656818208159 1 DEL 1 Missense_Mutation 293 0.201365187713311 0 TCGA-BR-4183-01 TTN chr2 178563192 178559860 T C 0.55 0.35031556967879 0.834576829928347 DEL 0 Nonsense_Mutation 186 0.0967741935483871 1 TCGA-VQ-A91A-01 FLG chr1 152315273 152312215 T G 1 0.813469781170832 1 DEL 1 Missense_Mutation 470 0.15531914893617 0 TCGA-VQ-A91A-01 NCKAP5 chr2 132784112 132783402 C G 1 0.853093888373013 1 DEL 1 Missense_Mutation 134 0.291044776119403 0 TCGA-VQ-A91A-01 TTN chr2 178564189 178561062 A G 1 0.859635150829653 1 DEL 1 Missense_Mutation 147 0.285714285714286 0 TCGA-VQ-A91A-01 TTN chr2 178586045 178577336 G T 1 0.66855387199799 1 DEL 1 Missense_Mutation 94 0.202127659574468 0 TCGA-VQ-A91A-01 COL6A3 chr2 237381110 237374438 G A 0.89 0.420378133933982 0.988683097003944 DEL 1 Missense_Mutation 54 0.148148148148148 0 TCGA-VQ-A91A-01 CMYA5 chr5 79743279 79736486 T A 1 0.645056473517689 1 DEL 1 Missense_Mutation 20 0.45 0 TCGA-VQ-A91A-01 DOCK2 chr5 170080364 170079004 C T 1 0.746806022115716 1 DEL 1 Missense_Mutation 95 0.242105263157895 0 TCGA-VQ-A91A-01 PKHD1 chr6 51913826 51909364 A C 1 0.625238249555621 1 DEL 1 Missense_Mutation 124 0.169354838709677 0 TCGA-VQ-A91A-01 SDK1 chr7 4236936 4233378 C A 0.66 0.315958841221785 0.97290272881598 DEL 1 Missense_Mutation 74 0.0945945945945946 0 TCGA-VQ-A91A-01 TMEM132D chr12 129078704 129074156 T G 0.66 0.399662433954678 0.951703123748183 DEL 0 Nonsense_Mutation 137 0.109489051094891 1 TCGA-VQ-A91A-01 AHNAK2 chr14 104956872 104953408 C A 0.87 0.627986916491235 0.989388572283961 DEL 1 Missense_Mutation 207 0.173913043478261 0 TCGA-VQ-A91A-01 DNAH17 chr17 78467903 78459996 G T 1 0.558525503735212 1 DEL 1 Missense_Mutation 29 0.275862068965517 0 TCGA-VQ-A91A-01 DNAH17 chr17 78487163 78480767 T C 1 0.40436477884586 1 DEL 1 Missense_Mutation 13 0.307692307692308 0 TCGA-VQ-A91A-01 DCC chr18 53165283 53157443 G A 1 0.867237206218114 1 DEL 1 Missense_Mutation 71 0.450704225352113 0 TCGA-VQ-A91A-01 MUC16 chr19 8966000 8962624 C A 1 0.807048823756241 1 DEL 1 Missense_Mutation 91 0.296703296703297 0 TCGA-D7-A6F0-01 FLG chr1 152322616 152314507 T C 1 0.895555818058818 1 DEL 1 Missense_Mutation 80 0.4875 0 TCGA-D7-A6F0-01 USH2A chr1 215973722 215965400 T G 1 0.724520865494648 1 DEL 1 Missense_Mutation 196 0.147959183673469 0 TCGA-D7-A6F0-01 NRXN1 chr2 50547913 50538426 C T 1 0.960963429868209 1 DEL 1 Missense_Mutation 421 0.330166270783848 0 TCGA-D7-A6F0-01 LRP2 chr2 169319184 169318782 G A 1 0.868489396110033 1 DEL 1 Missense_Mutation 116 0.336206896551724 0 TCGA-D7-A6F0-01 UTRN chr6 144563802 144554876 C A 0.73 0.324386486322303 0.981056111856584 DEL 1 Missense_Mutation 49 0.122448979591837 0 TCGA-D7-A6F0-01 DNAH11 chr7 21779129 21779062 A C 1 0.81666316567225 1 DEL 1 Missense_Mutation 47 0.446808510638298 0 TCGA-D7-A6F0-01 GLI3 chr7 41969922 41966273 C T 1 0.880751608702314 1 DEL 1 Missense_Mutation 53 0.60377358490566 0 TCGA-D7-A6F0-01 FAT3 chr11 92885454 92880838 G C 1 0.728718147438299 1 DEL 1 Missense_Mutation 249 0.152610441767068 0 TCGA-D7-A6F0-01 ABCC9 chr12 21851503 21845827 C T 1 0.438969124308468 1 DEL 1 Missense_Mutation 34 0.176470588235294 0 TCGA-D7-A6F0-01 TP53 chr17 7683334 7673803 G A 1 0.90078167504802 1 DEL 1 Missense_Mutation 44 0.818181818181818 0 TCGA-D7-A6F0-01 PEG3 chr19 56825148 56816316 C T 1 0.577151359041947 1 DEL 1 Missense_Mutation 80 0.1625 0 TCGA-D7-A6F0-01 PTPRT chr20 42125972 42118463 C T 1 0.896848763992642 1 DEL 1 Missense_Mutation 150 0.293333333333333 0 TCGA-D7-6527-01 SPTA1 chr1 158688148 158681576 T C 1 0.901804066205667 1 DEL 1 Missense_Mutation 304 0.194078947368421 0 TCGA-D7-6527-01 USH2A chr1 215659854 215650729 C T 1 0.914686696335249 1 DEL 1 Missense_Mutation 242 0.243801652892562 0 TCGA-D7-6527-01 USH2A chr1 216090874 216084768 T G 1 0.76884175784941 1 DEL 1 Missense_Mutation 175 0.148571428571429 0 TCGA-D7-6527-01 FMN2 chr1 240394348 240392517 T G 1 0.758813039829428 1 DEL 1 Missense_Mutation 159 0.150943396226415 0 TCGA-D7-6527-01 APOB chr2 21013682 21008698 G T 1 0.910323958755279 1 DEL 1 Missense_Mutation 142 0.352112676056338 0 TCGA-D7-6527-01 TTN chr2 178562425 178561762 C T 1 0.974550089789639 1 DEL 0 Silent 192 0.8125 0 TCGA-D7-6527-01 TTN chr2 178722740 178722440 T G 1 0.818015221049935 1 DEL 1 Missense_Mutation 197 0.152284263959391 0 TCGA-D7-6527-01 COL12A1 chr6 75163542 75155665 A C 1 0.636013877741771 1 DEL 1 Missense_Mutation 117 0.153846153846154 0 TCGA-D7-6527-01 SDK1 chr7 3977781 3969332 C T 1 0.973071024694625 1 DEL 0 Silent 305 0.534426229508197 0 TCGA-D7-6527-01 ABCA13 chr7 48379643 48372246 A C 1 0.621502065097843 1 DEL 1 Missense_Mutation 103 0.145631067961165 0 TCGA-D7-6527-01 PCLO chr7 82916395 82915380 T G 1 0.756967870711661 1 DEL 1 Missense_Mutation 66 0.257575757575758 0 TCGA-D7-6527-01 CSMD1 chr8 2954894 2950317 A C 1 0.807547693736831 1 DEL 1 Missense_Mutation 144 0.194444444444444 0 TCGA-D7-6527-01 ZFHX4 chr8 76716301 76708024 C G 1 0.708066405620733 1 DEL 1 Missense_Mutation 133 0.150375939849624 0 TCGA-D7-6527-01 TLR4 chr9 117719766 117713444 A C 1 0.627562090927908 1 DEL 1 Missense_Mutation 69 0.188405797101449 0 TCGA-D7-6527-01 CUBN chr10 17078418 17071495 T G 1 0.519960091459696 1 DEL 1 Missense_Mutation 75 0.133333333333333 0 TCGA-D7-6527-01 TP53 chr17 7680809 7676267 G - 1 0.964243266734096 1 DEL 0 Silent 175 0.651428571428571 0 TCGA-D7-6527-01 DCC chr18 53489323 53486877 C A 1 0.775541833289292 1 DEL 1 Missense_Mutation 106 0.226415094339623 0 TCGA-D7-6527-01 ZNF536 chr19 30558342 30549368 A T 1 0.505177470757156 1 DEL 1 Missense_Mutation 23 0.260869565217391 0 TCGA-D7-6528-01 FLG chr1 152316418 152308324 T G 1 0.862797762943219 1 DEL 1 Missense_Mutation 586 0.191126279863481 0 TCGA-D7-6528-01 FLG2 chr1 152363152 152356860 T C 0.69 0.470450867129507 0.93661597165588 DEL 0 Nonsense_Mutation 219 0.118721461187215 1 TCGA-D7-6528-01 USH2A chr1 216252846 216247046 T A 1 0.813396178966644 1 DEL 1 Missense_Mutation 100 0.32 0 TCGA-D7-6528-01 RYR2 chr1 237655771 237649989 C T 1 0.87657865727548 1 DEL 1 Missense_Mutation 157 0.331210191082803 0 TCGA-D7-6528-01 CNTNAP5 chr2 124506456 124504443 T G 1 0.773037163996629 1 DEL 1 Missense_Mutation 66 0.318181818181818 0 TCGA-D7-6528-01 NCKAP5 chr2 132741587 132732010 T G 1 0.762279249039654 1 DEL 1 Missense_Mutation 43 0.395348837209302 0 TCGA-D7-6528-01 THSD7B chr2 137096172 137094895 C T 0.76 0.519525305275059 0.972643028464056 DEL 1 Missense_Mutation 198 0.131313131313131 0 TCGA-D7-6528-01 LRP1B chr2 140252879 140247106 T G 1 0.823263517387885 1 DEL 1 Missense_Mutation 44 0.5 0 TCGA-D7-6528-01 LRP2 chr2 169182520 169182188 A T 0.83 0.49572033577655 0.987140504925866 DEL 1 Missense_Mutation 104 0.144230769230769 0 TCGA-D7-6528-01 TTN chr2 178723430 178722114 A C 0.77 0.547530999788911 0.969503041124844 DEL 0 Nonsense_Mutation 249 0.132530120481928 1 TCGA-D7-6528-01 TTN chr2 178731431 178730604 C T 0.63 0.374889147418914 0.938551005155907 DEL 0 Nonsense_Mutation 129 0.108527131782946 1 TCGA-D7-6528-01 TTN chr2 178783953 178779426 T C 1 0.599187534469165 1 DEL 1 Missense_Mutation 29 0.310344827586207 0 TCGA-D7-6528-01 DNAH7 chr2 195901166 195897695 A C 1 0.586534532233652 1 DEL 1 Missense_Mutation 28 0.357142857142857 0 TCGA-D7-6528-01 MAP2 chr2 209693640 209693614 T G 0.33 0.128691945004274 0.756605296040974 DEL 0 Nonsense_Mutation 46 0.0869565217391304 1 TCGA-D7-6528-01 APC chr5 112842049 112840255 - A 1 0.756119114379824 1 DEL 1 Missense_Mutation 34 0.5 0 TCGA-D7-6528-01 SYNE1 chr6 152290384 152281974 A C 1 0.875364846431058 1 DEL 0 Silent 40 0.725 0 TCGA-D7-6528-01 DNAH11 chr7 21597556 21591413 A T 1 0.714179511348043 1 DEL 1 Missense_Mutation 70 0.242857142857143 0 TCGA-D7-6528-01 RP1 chr8 54637176 54627912 T - 0.6 0.318574044981943 0.95123233376727 DEL 0 Nonsense_Mutation 86 0.104651162790698 1 TCGA-D7-6528-01 CDH23 chr10 71743784 71738546 T G 0.96 0.571273958689107 1 DEL 1 Missense_Mutation 63 0.253968253968254 0 TCGA-D7-6528-01 FAT3 chr11 92803893 92798478 A C 0.59 0.224733970835236 0.968868895312879 DEL 0 Nonsense_Mutation 46 0.0869565217391304 1 TCGA-D7-6528-01 DYNC2H1 chr11 103308913 103304609 A C 0.88 0.436389633135977 0.988788446865239 DEL 1 Missense_Mutation 69 0.130434782608696 0 TCGA-D7-6528-01 ABCC9 chr12 21807274 21805214 T G 0.76 0.407209146940272 0.981461321943381 DEL 1 Missense_Mutation 63 0.158730158730159 0 TCGA-D7-6528-01 SACS chr13 23337813 23331469 A C 1 0.880130463845028 1 DEL 1 Missense_Mutation 101 0.415841584158416 0 TCGA-D7-6528-01 PCDH17 chr13 57726986 57725028 T A 1 0.915953133392907 1 DEL 1 Missense_Mutation 110 0.5 0 TCGA-D7-6528-01 SLITRK5 chr13 87686662 87677543 G A 1 0.897981608805055 1 DEL 1 Missense_Mutation 88 0.465909090909091 0 TCGA-D7-6528-01 MUC16 chr19 8935869 8935398 G A 1 0.928483390571121 1 DEL 1 Missense_Mutation 115 0.521739130434783 0 TCGA-D7-6528-01 MUC16 chr19 8955504 8952314 T G 1 0.903272139323982 1 DEL 1 Missense_Mutation 131 0.389312977099237 0 TCGA-VQ-A8DU-01 NRXN1 chr2 50061366 50053419 A C 0.95 0.603502218296534 1 DEL 1 Missense_Mutation 72 0.277777777777778 0 TCGA-VQ-A8DU-01 NEB chr2 151683822 151677932 A C 1 0.690594088955876 1 DEL 1 Missense_Mutation 65 0.261538461538462 0 TCGA-VQ-A8DU-01 XIRP2 chr2 167258146 167250494 G A 0.33 0.174979919137264 0.575439271074621 DEL 0 Nonsense_Mutation 166 0.0602409638554217 1 TCGA-VQ-A8DU-01 TTN chr2 178597411 178588055 G A 1 0.687236021165094 1 DEL 1 Missense_Mutation 122 0.204918032786885 0 TCGA-VQ-A8DU-01 TTN chr2 178622012 178619999 A C 1 0.865748736547857 1 DEL 1 Missense_Mutation 56 0.535714285714286 0 TCGA-VQ-A8DU-01 COL12A1 chr6 75197625 75189602 A C 0.96 0.601035720551014 1 DEL 1 Missense_Mutation 92 0.217391304347826 0 TCGA-VQ-A8DU-01 ABCA13 chr7 48276922 48272457 T A 1 0.64711330777695 1 DEL 1 Missense_Mutation 64 0.265625 0 TCGA-VQ-A8DU-01 CSMD1 chr8 3579620 3574978 A T 1 0.832840481948845 1 DEL 1 Missense_Mutation 83 0.385542168674699 0 TCGA-VQ-A8DU-01 ZFHX4 chr8 76704568 76704168 T G 1 0.794938670099983 1 DEL 1 Missense_Mutation 35 0.542857142857143 0 TCGA-VQ-A8DU-01 CSMD3 chr8 113098868 113098825 A T 1 0.570140719622512 1 DEL 1 Missense_Mutation 60 0.233333333333333 0 TCGA-VQ-A8DU-01 CUBN chr10 16953873 16947292 A C 0.61 0.32331005805069 0.950892221646889 DEL 0 Nonsense_Mutation 65 0.138461538461538 1 TCGA-VQ-A8DU-01 PCDH17 chr13 57669265 57666498 A T 0.65 0.376552587291918 0.956381853521731 DEL 0 Nonsense_Mutation 81 0.148148148148148 1 TCGA-VQ-A8DU-01 TP53 chr17 7674800 7673803 G A 1 0.682295936727524 1 DEL 1 Missense_Mutation 10 0.9 0 TCGA-VQ-A8DU-01 MUC16 chr19 8867765 8866149 A C 0.97 0.459585883577015 1 DEL 1 Missense_Mutation 28 0.285714285714286 0 TCGA-VQ-A8DU-01 MUC16 chr19 8944462 8937708 A G 1 0.862570634524212 1 DEL 1 Missense_Mutation 69 0.521739130434783 0 TCGA-IN-A7NR-01 APOB chr2 21029042 21022964 C T 0.84 0.379385716852791 0.986734805457677 DEL 1 Missense_Mutation 73 0.0958904109589041 0 TCGA-IN-A7NR-01 MAP2 chr2 209695851 209693370 A C 0.99 0.420240218094282 1 DEL 1 Missense_Mutation 62 0.112903225806452 0 TCGA-IN-A7NR-01 FAT4 chr4 125409301 125406991 C T 0.92 0.529545261873026 1 DEL 1 Missense_Mutation 143 0.104895104895105 0 TCGA-IN-A7NR-01 FAT2 chr5 151527388 151521848 G A 1 0.376411451914864 1 DEL 1 Missense_Mutation 40 0.125 0 TCGA-IN-A7NR-01 ZFHX4 chr8 76853521 76852129 G C 1 0.5745858505892 1 DEL 1 Missense_Mutation 82 0.134146341463415 0 TCGA-IN-A7NR-01 CSMD3 chr8 112560463 112556819 A G 0.9 0.369829953911021 0.988084675526952 DEL 1 Missense_Mutation 65 0.0923076923076923 0 TCGA-IN-A7NR-01 TG chr8 133138318 133133631 A G 1 0.53207720115827 1 DEL 1 Missense_Mutation 37 0.189189189189189 0 TCGA-IN-A7NR-01 TLR4 chr9 117715262 117713585 A C 0.99 0.46535971652422 1 DEL 1 Missense_Mutation 80 0.1125 0 TCGA-IN-A7NR-01 LRRK2 chr12 40325145 40323250 A C 1 0.706368565639754 1 DEL 1 Missense_Mutation 92 0.184782608695652 0 TCGA-IN-A7NR-01 TP53 chr17 7677860 7675088 C T 0.82 0.349197627271751 0.985720909181078 DEL 1 Missense_Mutation 64 0.09375 0 TCGA-IP-7968-01 COL11A1 chr1 102975717 102970224 C T 1 0.676814544116895 1 DEL 1 Missense_Mutation 77 0.233766233766234 0 TCGA-IP-7968-01 TTN chr2 178687721 178684045 T G 1 0.54848905532846 1 DEL 1 Missense_Mutation 70 0.185714285714286 0 TCGA-IP-7968-01 DST chr6 56500001 56497428 G A 1 0.931064375665484 1 DEL 1 Missense_Mutation 85 0.670588235294118 0 TCGA-IP-7968-01 TP53 chr17 7678968 7670685 G A 1 0.864610225350119 1 DEL 1 Missense_Mutation 34 0.794117647058823 0 TCGA-IP-7968-01 DNAH17 chr17 78468658 78466704 G A 1 0.851799784679304 1 DEL 1 Missense_Mutation 52 0.519230769230769 0 TCGA-IP-7968-01 MUC16 chr19 8951693 8948035 A T 1 0.688814099068015 1 DEL 1 Missense_Mutation 45 0.311111111111111 0 TCGA-CD-8530-01 RYR2 chr1 237331769 237330973 A T 1 0.83720044427808 1 DEL 1 Missense_Mutation 70 0.4 0 TCGA-CD-8530-01 LRP1B chr2 140890250 140884005 T A 0.37 0.170368812243375 0.748883123048595 DEL 0 Nonsense_Mutation 72 0.0833333333333333 1 TCGA-CD-8530-01 TTN chr2 178567130 178563971 A C 0.72 0.437940001263406 0.970904063535668 DEL 0 Nonsense_Mutation 93 0.161290322580645 1 TCGA-CD-8530-01 FAM135B chr8 138160483 138153172 T G 0.35 0.120657748301326 0.866020674426102 DEL 0 Nonsense_Mutation 47 0.0638297872340425 1 TCGA-CD-8530-01 NALCN chr13 101109489 101103234 G C 0.29 0.133321950238339 0.602339725990476 DEL 0 Nonsense_Mutation 91 0.0659340659340659 1 TCGA-CD-8530-01 TP53 chr17 7684773 7676037 A T 1 0.801121148246016 1 DEL 1 Missense_Mutation 64 0.390625 0 TCGA-HF-7136-01 NRXN1 chr2 51028053 51027862 C A 1 0.778820744758905 1 DEL 1 Missense_Mutation 54 0.407407407407407 0 TCGA-HF-7136-01 RP1 chr8 54621361 54621225 C T 1 0.857609638391649 1 DEL 1 Missense_Mutation 248 0.193548387096774 0 TCGA-HF-7136-01 RP1 chr8 54636428 54629835 A T 1 0.696584243561126 1 DEL 1 Missense_Mutation 38 0.315789473684211 0 TCGA-BR-A4J2-01 DNAH7 chr2 195970433 195960848 C T 1 0.772200437721291 1 DEL 1 Missense_Mutation 136 0.161764705882353 0 TCGA-B7-5818-01 ARID1A chr1 26781371 26779440 - G 1 0.936587122424172 1 DEL 1 Missense_Mutation 95 0.726315789473684 0 TCGA-B7-5818-01 COL11A1 chr1 103012056 103005885 G A 0.84 0.665773909179187 0.979630162748153 DEL 1 Missense_Mutation 203 0.29064039408867 0 TCGA-B7-5818-01 HMCN1 chr1 185969200 185963793 T G 0.66 0.496885809937971 0.836074527580138 DEL 0 Nonsense_Mutation 194 0.22680412371134 1 TCGA-B7-5818-01 USH2A chr1 216425149 216422141 A C 0.87 0.606622476203059 0.989757073843407 DEL 1 Missense_Mutation 86 0.302325581395349 0 TCGA-B7-5818-01 PIK3CA chr3 179218858 179218294 G A 1 0.932338898113257 1 DEL 1 Missense_Mutation 184 0.423913043478261 0 TCGA-B7-5818-01 CTNND2 chr5 11736325 11732176 G A 1 0.872664327208398 1 DEL 1 Missense_Mutation 178 0.415730337078652 0 TCGA-B7-5818-01 DNAH5 chr5 13869592 13864433 C T 0.83 0.633821074637378 0.982156801856696 DEL 1 Missense_Mutation 149 0.288590604026846 0 TCGA-B7-5818-01 ADGRV1 chr5 90829310 90829095 C T 0.75 0.608099964494109 0.894060075421864 DEL 0 Nonsense_Mutation 298 0.258389261744966 1 TCGA-B7-5818-01 RIMS1 chr6 72262844 72258130 T C 0.98 0.610616259587516 1 DEL 1 Missense_Mutation 53 0.339622641509434 0 TCGA-B7-5818-01 COL12A1 chr6 75124423 75123397 T - 1 0.570333322951933 1 DEL 1 Missense_Mutation 20 0.45 0 TCGA-B7-5818-01 PCLO chr7 82853423 82845459 C T 0.57 0.300787260408495 0.923811077102603 DEL 0 Nonsense_Mutation 62 0.145161290322581 1 TCGA-B7-5818-01 RELN chr7 103551627 103542807 T C 1 0.7900065868298 1 DEL 1 Missense_Mutation 291 0.257731958762887 0 TCGA-B7-5818-01 CSMD1 chr8 2982461 2978723 A G 1 0.662832504030392 1 DEL 1 Missense_Mutation 31 0.451612903225806 0 TCGA-B7-5818-01 TAF1L chr9 32634746 32634601 C T 0.77 0.591267967064974 0.946725033080496 DEL 0 Nonsense_Mutation 181 0.265193370165746 1 TCGA-B7-5818-01 PCDH15 chr10 54217663 54213954 T G 0.66 0.460562480710841 0.887293910726245 DEL 0 Nonsense_Mutation 119 0.226890756302521 1 TCGA-B7-5818-01 GRM5 chr11 88577569 88567869 C T 0.79 0.531161933097646 0.978484021988483 DEL 1 Missense_Mutation 81 0.271604938271605 0 TCGA-B7-5818-01 GRM5 chr11 88606125 88604859 A G 1 0.797918611619846 1 DEL 1 Missense_Mutation 156 0.365384615384615 0 TCGA-B7-5818-01 DYNC2H1 chr11 103238530 103234131 G T 1 0.365233230120956 1 DEL 1 Missense_Mutation 10 0.4 0 TCGA-B7-5818-01 LRRK2 chr12 40299701 40293642 G C 0.93 0.662376810006613 1 DEL 1 Missense_Mutation 100 0.32 0 TCGA-B7-5818-01 LRRK2 chr12 40295591 40293643 C T 0.93 0.662376810006613 1 DEL 1 Missense_Mutation 100 0.32 0 TCGA-B7-5818-01 TMEM132D chr12 129078069 129074072 G A 0.71 0.543317562066648 0.904304415989584 DEL 0 Nonsense_Mutation 178 0.247191011235955 1 TCGA-B7-5818-01 PCDH17 chr13 57638251 57633345 G A 0.63 0.433815232346451 0.871294137324771 DEL 0 Nonsense_Mutation 161 0.161490683229814 1 TCGA-B7-5818-01 DNAH3 chr16 21075486 21067380 G A 0.81 0.602189411670519 0.97773183727037 DEL 1 Missense_Mutation 132 0.28030303030303 0 TCGA-B7-5818-01 LAMA1 chr18 7027372 7026062 C A 1 0.598880678305692 1 DEL 1 Missense_Mutation 34 0.382352941176471 0 TCGA-B7-5818-01 MUC16 chr19 8973224 8972278 T A 0.97 0.759860826050199 1 DEL 1 Missense_Mutation 182 0.335164835164835 0 TCGA-HU-A4H0-01 NCKAP5 chr2 132791890 132785331 G T 0.99 0.486697628452148 1 DEL 1 Missense_Mutation 80 0.125 0 TCGA-HU-A4H0-01 PIK3CA chr3 179208045 179204582 A G 1 0.429939518625298 1 DEL 1 Missense_Mutation 40 0.15 0 TCGA-HU-A4H0-01 FAT4 chr4 125460678 125451207 T A 0.64 0.30886087524025 0.96787473343315 DEL 1 Missense_Mutation 54 0.12962962962963 0 TCGA-HU-A4H0-01 PCDH10 chr4 133158831 133151915 G A 1 0.457370087915567 1 DEL 1 Missense_Mutation 31 0.225806451612903 0 TCGA-HU-A4H0-01 DCHS2 chr4 154300248 154298396 G T 1 0.495540275418521 1 DEL 1 Missense_Mutation 59 0.169491525423729 0 TCGA-HU-A4H0-01 DNAH5 chr5 13712833 13708267 TCTG - 1 0.531552624491274 1 DEL 1 Missense_Mutation 80 0.1375 0 TCGA-HU-A4H0-01 ADGRB3 chr6 69333275 69327855 T G 1 0.597437823510565 1 DEL 1 Missense_Mutation 34 0.264705882352941 0 TCGA-HU-A4H0-01 TMEM132D chr12 129080196 129074581 T G 1 0.570955184828256 1 DEL 1 Missense_Mutation 30 0.266666666666667 0 TCGA-VQ-A91W-01 SPTA1 chr1 158649956 158644262 G - 0.74 0.462434071564084 0.975538824938044 DEL 0 Nonsense_Mutation 86 0.186046511627907 1 TCGA-VQ-A91W-01 PXDN chr2 1686502 1683719 T G 1 0.541676015270272 1 DEL 1 Missense_Mutation 23 0.347826086956522 0 TCGA-VQ-A91W-01 TTN chr2 178787987 178782224 G A 1 0.703061152864654 1 DEL 1 Missense_Mutation 58 0.327586206896552 0 TCGA-VQ-A91W-01 CTNNB1 chr3 41234266 41224613 G A 0.84 0.411726995200042 0.987065597236656 DEL 1 Missense_Mutation 38 0.210526315789474 0 TCGA-VQ-A91W-01 PIK3CA chr3 179209080 179204533 G A 1 0.746891776865335 1 DEL 1 Missense_Mutation 121 0.28099173553719 0 TCGA-VQ-A91W-01 PIK3CA chr3 179218838 179218294 G A 0.73 0.366033406591472 0.978967999679506 DEL 0 Silent 44 0.181818181818182 0 TCGA-VQ-A91W-01 ABCA13 chr7 48275923 48275163 C T 0.88 0.45611012556035 0.988882790064482 DEL 1 Missense_Mutation 57 0.175438596491228 0 TCGA-VQ-A91W-01 NALCN chr13 101347698 101345332 - ATTTAAAT 0.3 0.146310194762797 0.590759343222945 DEL 0 Nonsense_Mutation 92 0.0760869565217391 1 TCGA-VQ-A91W-01 DSEL chr18 67515798 67511230 A C 0.81 0.472375557605622 0.985585811925896 DEL 1 Missense_Mutation 64 0.203125 0 TCGA-BR-6803-01 CDH1 chr16 68819800 68810269 G T 1 0.927726231347487 1 DEL 0 Silent 228 0.285087719298246 0 TCGA-BR-6803-01 TP53 chr17 7685113 7675224 G A 0.87 0.332227222096269 0.986806317605229 DEL 1 Missense_Mutation 54 0.0925925925925926 0 TCGA-BR-A4CR-01 CNTNAP5 chr2 124921621 124914262 G A 1 0.600118086155611 1 DEL 1 Missense_Mutation 49 0.26530612244898 0 TCGA-BR-A4CR-01 SCN10A chr3 38728766 38727042 A C 1 0.820612515637474 1 DEL 1 Missense_Mutation 142 0.295774647887324 0 TCGA-BR-A4CR-01 TP53 chr17 7677605 7673764 C T 1 0.925641098925758 1 DEL 1 Missense_Mutation 55 0.890909090909091 0 TCGA-BR-A4CR-01 DNAH9 chr17 11750198 11744984 C T 1 0.885857266302538 1 DEL 1 Missense_Mutation 70 0.542857142857143 0 TCGA-CD-5799-01 CDH1 chr16 68821341 68813374 A T 1 0.96631058048084 1 DEL 1 Missense_Mutation 233 0.652360515021459 0 TCGA-CD-5799-01 TP53 chr17 7677206 7674220 C T 1 0.881199363242887 1 DEL 1 Missense_Mutation 75 0.573333333333333 0 TCGA-CD-5799-01 DNAH17 chr17 78531372 78525121 G A 1 0.68606864142039 1 DEL 1 Missense_Mutation 17 0.647058823529412 0 TCGA-CD-5799-01 EPB41L3 chr18 5447139 5438046 T A 1 0.889030863930649 1 DEL 1 Missense_Mutation 126 0.420634920634921 0 TCGA-CD-5799-01 SMAD4 chr18 51069192 51065561 TCGCTTTTGTTTGGG - 1 0.903461711624557 1 DEL 1 Missense_Mutation 102 0.666666666666667 0 TCGA-BR-7717-01 HMCN1 chr1 186117385 186114035 A C 0.91 0.672586610767496 1 DEL 1 Missense_Mutation 167 0.239520958083832 0 TCGA-BR-7717-01 TTN chr2 178741709 178736041 T G 1 0.928887887319726 1 DEL 1 Missense_Mutation 116 0.568965517241379 0 TCGA-BR-7717-01 TTN chr2 178796198 178793528 G A 0.93 0.575821417331419 1 DEL 1 Missense_Mutation 74 0.243243243243243 0 TCGA-BR-7717-01 MAP2 chr2 209701684 209694701 G A 0.68 0.480792125222593 0.909108008037873 DEL 0 Nonsense_Mutation 169 0.177514792899408 1 TCGA-BR-7717-01 MAP2 chr2 209695431 209695385 T G 1 0.914698776347904 1 DEL 1 Missense_Mutation 151 0.450331125827815 0 TCGA-BR-7717-01 DNAH5 chr5 13780177 13770929 T G 0.52 0.28290247230087 0.862972237296662 DEL 0 Nonsense_Mutation 74 0.135135135135135 1 TCGA-BR-7717-01 SDK1 chr7 4215536 4210112 G A 0.61 0.343949616870842 0.936634613900778 DEL 0 Nonsense_Mutation 69 0.159420289855072 1 TCGA-BR-7717-01 TENM4 chr11 78759085 78756820 T G 0.65 0.299032377951692 0.971579418358881 DEL 0 Nonsense_Mutation 35 0.171428571428571 1 TCGA-BR-7717-01 PEG3 chr19 56820824 56816650 G A 0.8 0.413853390367855 0.984785926484542 DEL 1 Missense_Mutation 43 0.209302325581395 0 TCGA-D7-5577-01 ARID1A chr1 26780716 26774563 C T 0.99 0.701452708940466 1 DEL 1 Missense_Mutation 114 0.298245614035088 0 TCGA-D7-5577-01 APOB chr2 21035438 21030001 T C 1 0.733709384977243 1 DEL 1 Missense_Mutation 135 0.303703703703704 0 TCGA-D7-5577-01 TTN chr2 178693724 178688766 T G 1 0.796671373157424 1 DEL 1 Missense_Mutation 104 0.365384615384615 0 TCGA-D7-5577-01 TTN chr2 178726822 178725566 C T 1 0.703548945162688 1 DEL 1 Missense_Mutation 105 0.304761904761905 0 TCGA-D7-5577-01 PIK3CA chr3 179201594 179199088 G A 1 0.846744807836455 1 DEL 1 Missense_Mutation 241 0.33195020746888 0 TCGA-D7-5577-01 PIK3CA chr3 179242094 179234286 G T 1 0.947261423730931 1 DEL 1 Missense_Mutation 140 0.635714285714286 0 TCGA-D7-5577-01 CTNND2 chr5 11200526 11199513 C A 1 0.84340946947823 1 DEL 1 Missense_Mutation 339 0.253687315634218 0 TCGA-D7-5577-01 CSMD1 chr8 2964281 2963336 G A 1 0.805225476592604 1 DEL 1 Missense_Mutation 221 0.312217194570136 0 TCGA-D7-5577-01 PREX2 chr8 68139073 68134106 G T 1 0.809953352184855 1 DEL 1 Missense_Mutation 111 0.369369369369369 0 TCGA-D7-5577-01 TRPS1 chr8 115614727 115604933 A C 1 0.806332478425313 1 DEL 1 Missense_Mutation 178 0.325842696629214 0 TCGA-D7-5577-01 NBEA chr13 35554921 35550529 G A 1 0.71766687747016 1 DEL 1 Missense_Mutation 113 0.256637168141593 0 TCGA-D7-5577-01 PEG3 chr19 56832975 56824414 G A 1 0.973333760864644 1 DEL 1 Missense_Mutation 303 0.577557755775578 0 TCGA-HU-A4H2-01 USH2A chr1 216425958 216422245 G T 0.96 0.550129202536401 1 DEL 1 Missense_Mutation 100 0.15 0 TCGA-HU-A4H2-01 RYR2 chr1 237559793 237550599 G A 1 0.292518450530059 0.989104221147708 DEL 1 Missense_Mutation 16 0.1875 0 TCGA-HU-A4H2-01 NRXN1 chr2 51029851 51027651 G A 1 0.380633733834291 1 DEL 1 Missense_Mutation 17 0.235294117647059 0 TCGA-HU-A4H2-01 TTN chr2 178737826 178730225 A G 1 0.530778321848762 1 DEL 1 Missense_Mutation 46 0.195652173913043 0 TCGA-HU-A4H2-01 FAT4 chr4 125484426 125476231 A C 0.74 0.461124520217268 0.975998714273713 DEL 1 Missense_Mutation 95 0.168421052631579 0 TCGA-HU-A4H2-01 DNAH5 chr5 13766299 13766149 G A 0.9 0.598803136975323 1 DEL 1 Missense_Mutation 151 0.165562913907285 0 TCGA-HU-A4H2-01 DNAH5 chr5 13847414 13840973 G A 0.5 0.256664414789939 0.892626717746708 DEL 0 Nonsense_Mutation 86 0.0930232558139535 1 TCGA-HU-A4H2-01 CSMD3 chr8 112290025 112281189 A T 1 0.651749746319168 1 DEL 1 Missense_Mutation 54 0.259259259259259 0 TCGA-HU-A4H2-01 CSMD3 chr8 112643697 112636940 A C 1 0.74899784046476 1 DEL 1 Missense_Mutation 106 0.245283018867925 0 TCGA-HU-A4H2-01 CUBN chr10 17021536 17019968 G A 0.9 0.488327390065715 0.98990176067389 DEL 1 Missense_Mutation 86 0.13953488372093 0 TCGA-HU-A4H2-01 DCLK1 chr13 36130488 36125899 C T 0.93 0.563079065077317 1 DEL 1 Missense_Mutation 81 0.209876543209877 0 TCGA-HU-A4H2-01 PCDH17 chr13 57644547 57634895 G A 0.68 0.307609845631026 0.975649423509235 DEL 1 Missense_Mutation 39 0.153846153846154 0 TCGA-HU-A4H2-01 TP53 chr17 7678745 7675159 GGCGCGGACGCGGGTGCCGGGCGGG - 1 0.834627786165363 1 DEL 1 Missense_Mutation 57 0.473684210526316 0 TCGA-HU-A4H2-01 RYR1 chr19 38451353 38446481 C T 1 0.899401641083402 1 DEL 0 Silent 106 0.405660377358491 0 TCGA-BR-7197-01 HMCN1 chr1 186093118 186087297 G T 1 0.962229945225858 1 DEL 0 Silent 138 0.77536231884058 0 TCGA-BR-7197-01 CNTNAP5 chr2 124513792 124504535 C T 1 0.556249427862959 1 DEL 1 Missense_Mutation 42 0.261904761904762 0 TCGA-BR-7197-01 LRP1B chr2 140355058 140350853 T C 0.54 0.276247285132691 0.918763868832411 DEL 0 Nonsense_Mutation 64 0.125 1 TCGA-BR-7197-01 TTN chr2 178721864 178713995 T G 1 0.685426534802991 1 DEL 1 Missense_Mutation 38 0.368421052631579 0 TCGA-BR-7197-01 TTN chr2 178747756 178739729 T G 1 0.888404445587907 1 DEL 1 Missense_Mutation 254 0.307086614173228 0 TCGA-BR-7197-01 MAP2 chr2 209700490 209695114 G C 0.99 0.607131720439635 1 DEL 1 Missense_Mutation 83 0.228915662650602 0 TCGA-BR-7197-01 ERBB4 chr2 211391474 211383874 T G 1 0.844039831429173 1 DEL 1 Missense_Mutation 255 0.270588235294118 0 TCGA-BR-7197-01 APC chr5 112821384 112815564 C T 0.63 0.379780187824492 0.921714676147207 DEL 0 Nonsense_Mutation 48 0.270833333333333 1 TCGA-BR-7197-01 ADGRB3 chr6 69371021 69361189 A C 1 0.546225661473613 1 DEL 1 Missense_Mutation 50 0.24 0 TCGA-BR-7197-01 UTRN chr6 144463241 144458927 C G 1 0.775838021680792 1 DEL 1 Missense_Mutation 35 0.542857142857143 0 TCGA-BR-7197-01 SYNE1 chr6 152360136 152350223 T A 1 0.817643269472229 1 DEL 1 Missense_Mutation 100 0.39 0 TCGA-BR-7197-01 ABCA13 chr7 48525545 48520215 T A 0.84 0.442658990962143 0.987529187656228 DEL 1 Missense_Mutation 63 0.158730158730159 0 TCGA-BR-7197-01 PCLO chr7 82959059 82952522 C T 1 0.643797546748826 1 DEL 1 Missense_Mutation 73 0.191780821917808 0 TCGA-BR-7197-01 PCLO chr7 82955957 82953842 T A 1 0.305080827849404 0.989992974229184 DEL 1 Missense_Mutation 16 0.1875 0 TCGA-BR-7197-01 RELN chr7 103684827 103682231 A G 1 0.750709312668483 1 DEL 1 Missense_Mutation 118 0.271186440677966 0 TCGA-BR-7197-01 CUBN chr10 17089570 17084402 A C 1 0.633514519999786 1 DEL 1 Missense_Mutation 42 0.30952380952381 0 TCGA-BR-7197-01 PCDH17 chr13 57636705 57633982 T C 0.64 0.268767966068715 0.971521133282812 DEL 1 Missense_Mutation 34 0.147058823529412 0 TCGA-BR-7197-01 TP53 chr17 7681637 7674894 G A 0.84 0.502520507502671 0.987102106040182 DEL 1 Missense_Mutation 36 0.361111111111111 0 TCGA-BR-7197-01 LAMA1 chr18 7044347 7043227 T G 0.81 0.625715112085407 0.973120260063436 DEL 1 Missense_Mutation 205 0.24390243902439 0 TCGA-BR-7197-01 MUC16 chr19 8957225 8949181 T A 1 0.859114341386423 1 DEL 1 Missense_Mutation 175 0.28 0 TCGA-BR-7197-01 MUC16 chr19 8969837 8962603 C A 0.98 0.689670911435429 1 DEL 1 Missense_Mutation 202 0.183168316831683 0 TCGA-BR-7197-01 ZNF208 chr19 21980400 21973319 T G 1 0.720081967223107 1 DEL 1 Missense_Mutation 30 0.5 0 TCGA-BR-8483-01 LRP1B chr2 141251471 141247350 T G 1 0.854864694626091 1 DEL 1 Missense_Mutation 126 0.253968253968254 0 TCGA-BR-8483-01 NEB chr2 151701387 151697582 A G 1 0.779712540170238 1 DEL 1 Missense_Mutation 110 0.2 0 TCGA-BR-8483-01 TTN chr2 178606882 178605073 G A 1 0.781543053499874 1 DEL 1 Missense_Mutation 191 0.151832460732984 0 TCGA-BR-8483-01 TTN chr2 178729737 178728256 G T 0.96 0.349345978623459 0.988491642936664 DEL 1 Missense_Mutation 52 0.0961538461538462 0 TCGA-BR-8483-01 DST chr6 56488928 56482747 C T 1 0.741755711465942 1 DEL 1 Missense_Mutation 76 0.236842105263158 0 TCGA-BR-8483-01 SYNE1 chr6 152313137 152310735 G A 1 0.461192469593113 1 DEL 1 Missense_Mutation 20 0.25 0 TCGA-BR-8483-01 GLI3 chr7 41965480 41964897 G T 1 0.922501187449295 1 DEL 1 Missense_Mutation 143 0.370629370629371 0 TCGA-BR-8483-01 GLI3 chr7 41975089 41965787 C T 1 0.781903075145488 1 DEL 1 Missense_Mutation 212 0.132075471698113 0 TCGA-BR-8483-01 ABCA13 chr7 48281158 48274742 C A 1 0.797532146476151 1 DEL 1 Missense_Mutation 136 0.176470588235294 0 TCGA-BR-8483-01 ABCA13 chr7 48474818 48471550 G A 1 0.58011732992264 1 DEL 0 Silent 9 0.666666666666667 0 TCGA-BR-8483-01 PCLO chr7 82954848 82949610 C A 1 0.893771299174075 1 DEL 1 Missense_Mutation 366 0.158469945355191 0 TCGA-BR-8483-01 ZFHX4 chr8 76784938 76778276 C A 1 0.944614606416728 1 DEL 1 Missense_Mutation 250 0.32 0 TCGA-BR-8483-01 FAM135B chr8 138173951 138167936 G A 1 0.760990814130645 1 DEL 1 Missense_Mutation 236 0.11864406779661 0 TCGA-BR-8483-01 NAV3 chr12 78028075 78021821 C T 1 0.698729819442341 1 DEL 1 Missense_Mutation 42 0.30952380952381 0 TCGA-BR-8483-01 AHNAK2 chr14 104956161 104946662 G A 1 0.955076017363505 1 DEL 1 Missense_Mutation 286 0.402097902097902 0 TCGA-BR-8483-01 MUC16 chr19 8965266 8963631 G T 1 0.858512875096831 1 DEL 1 Missense_Mutation 100 0.32 0 TCGA-BR-8483-01 PTPRT chr20 42322145 42315964 A C 1 0.823392017672996 1 DEL 1 Missense_Mutation 205 0.141463414634146 0 TCGA-VQ-A91X-01 HMCN1 chr1 186099928 186093190 G A 0.73 0.414734362953543 0.977299269742165 DEL 1 Missense_Mutation 98 0.122448979591837 0 TCGA-VQ-A91X-01 NCKAP5 chr2 132788476 132784434 C A 1 0.777518745891468 1 DEL 1 Missense_Mutation 165 0.212121212121212 0 TCGA-VQ-A91X-01 LRP1B chr2 140299751 140297940 A C 1 0.693234527246718 1 DEL 1 Missense_Mutation 185 0.172972972972973 0 TCGA-VQ-A91X-01 LRP1B chr2 141062677 141055230 A G 0.89 0.457588994133382 0.989269748235654 DEL 1 Missense_Mutation 67 0.149253731343284 0 TCGA-VQ-A91X-01 NEB chr2 151612892 151610780 A C 1 0.403819191767236 1 DEL 1 Missense_Mutation 13 0.307692307692308 0 TCGA-VQ-A91X-01 NEB chr2 151703340 151694589 T G 1 0.507364621616842 1 DEL 1 Missense_Mutation 19 0.315789473684211 0 TCGA-VQ-A91X-01 TTN chr2 178585186 178578934 T C 1 0.710010725252383 1 DEL 1 Missense_Mutation 87 0.229885057471264 0 TCGA-VQ-A91X-01 TTN chr2 178603209 178602508 T G 1 0.448261548187655 1 DEL 1 Missense_Mutation 28 0.214285714285714 0 TCGA-VQ-A91X-01 TTN chr2 178614453 178607896 C T 1 0.90723958478226 1 DEL 1 Missense_Mutation 125 0.408 0 TCGA-VQ-A91X-01 TTN chr2 178725990 178722875 A C 1 0.498223270783069 1 DEL 1 Missense_Mutation 30 0.233333333333333 0 TCGA-VQ-A91X-01 MAP2 chr2 209701085 209696732 A C 1 0.5841880381474 1 DEL 1 Missense_Mutation 50 0.22 0 TCGA-VQ-A91X-01 DNAH5 chr5 13879618 13870875 T A 1 0.792011329787827 1 DEL 1 Missense_Mutation 106 0.245283018867925 0 TCGA-VQ-A91X-01 CMYA5 chr5 79743420 79734717 A T 1 0.77069832740386 1 DEL 1 Missense_Mutation 95 0.242105263157895 0 TCGA-VQ-A91X-01 FAT2 chr5 151566564 151566533 T C 1 0.784570288835907 1 DEL 1 Missense_Mutation 78 0.282051282051282 0 TCGA-VQ-A91X-01 PKHD1 chr6 51919339 51912381 A G 0.99 0.586817952157721 1 DEL 1 Missense_Mutation 127 0.141732283464567 0 TCGA-VQ-A91X-01 DST chr6 56498579 56497413 G A 1 0.772731348792515 1 DEL 1 Missense_Mutation 77 0.272727272727273 0 TCGA-VQ-A91X-01 SYNE1 chr6 152398069 152396847 T C 1 0.875215014414916 1 DEL 1 Missense_Mutation 150 0.286666666666667 0 TCGA-VQ-A91X-01 ABCA13 chr7 48517448 48507987 T G 1 0.782818675640381 1 DEL 1 Missense_Mutation 46 0.391304347826087 0 TCGA-VQ-A91X-01 PCLO chr7 82959112 82950119 C A 1 0.857529633689774 1 DEL 1 Missense_Mutation 84 0.369047619047619 0 TCGA-VQ-A91X-01 TRPA1 chr8 72062437 72056941 T A 1 0.551518128879999 1 DEL 1 Missense_Mutation 57 0.192982456140351 0 TCGA-VQ-A91X-01 ZFHX4 chr8 76711562 76705638 T G 0.97 0.390899389000771 0.989563612282772 DEL 1 Missense_Mutation 37 0.162162162162162 0 TCGA-VQ-A91X-01 TAF1L chr9 32632163 32630270 T G 0.96 0.597851158787067 1 DEL 1 Missense_Mutation 153 0.137254901960784 0 TCGA-VQ-A91X-01 TP53 chr17 7682913 7674954 G A 1 0.749055290682773 1 DEL 1 Missense_Mutation 25 0.56 0 TCGA-VQ-A91X-01 LAMA1 chr18 7044161 7038885 G T 1 0.694030820791299 1 DEL 1 Missense_Mutation 154 0.181818181818182 0 TCGA-CD-A487-01 FLG2 chr1 152360063 152354790 T C 1 0.88091587317874 1 DEL 1 Missense_Mutation 398 0.218592964824121 0 TCGA-CD-A487-01 SPTA1 chr1 158689734 158685146 A C 1 0.605558735587534 1 DEL 1 Missense_Mutation 44 0.25 0 TCGA-CD-A487-01 USH2A chr1 215742157 215741435 T C 0.88 0.537072806354681 1 DEL 1 Missense_Mutation 111 0.153153153153153 0 TCGA-CD-A487-01 XIRP2 chr2 167248181 167244413 A C 1 0.459684618052382 1 DEL 1 Missense_Mutation 45 0.177777777777778 0 TCGA-CD-A487-01 TTN chr2 178590001 178584789 A G 0.88 0.627017222789604 1 DEL 1 Missense_Mutation 222 0.153153153153153 0 TCGA-CD-A487-01 TTN chr2 178616691 178612895 T C 0.76 0.306001427974331 0.98256530991087 DEL 1 Missense_Mutation 38 0.131578947368421 0 TCGA-CD-A487-01 TTN chr2 178780056 178779299 T G 1 0.422536777345485 1 DEL 1 Missense_Mutation 31 0.193548387096774 0 TCGA-CD-A487-01 ADGRV1 chr5 90698079 90694191 T C 1 0.461284504363736 1 DEL 1 Missense_Mutation 35 0.2 0 TCGA-CD-A487-01 ADGRB3 chr6 69357362 69355835 G T 0.47 0.239054426374602 0.855399375364724 DEL 0 Nonsense_Mutation 98 0.0816326530612245 1 TCGA-CD-A487-01 SYNE1 chr6 152335882 152330826 A C 1 0.773642770610107 1 DEL 1 Missense_Mutation 107 0.252336448598131 0 TCGA-CD-A487-01 CSMD1 chr8 3238141 3230070 A C 0.64 0.268125371006686 0.972908565601911 DEL 1 Missense_Mutation 45 0.111111111111111 0 TCGA-CD-A487-01 PREX2 chr8 68141554 68134190 A C 0.71 0.402605316385104 0.973005142430705 DEL 1 Missense_Mutation 98 0.122448979591837 0 TCGA-CD-A487-01 TRPS1 chr8 115625625 115619844 T G 1 0.679825956674008 1 DEL 1 Missense_Mutation 72 0.236111111111111 0 TCGA-CD-A487-01 PCDH15 chr10 53812788 53809346 T A 1 0.608098349209992 1 DEL 1 Missense_Mutation 69 0.188405797101449 0 TCGA-CD-A487-01 TENM4 chr11 78676913 78672292 C T 1 0.612548893332202 1 DEL 1 Missense_Mutation 99 0.181818181818182 0 TCGA-CD-A487-01 DYNC2H1 chr11 103161184 103156616 G A 0.87 0.336731246442712 0.986871065851053 DEL 1 Missense_Mutation 33 0.151515151515152 0 TCGA-CD-A487-01 LRRK2 chr12 40278263 40274887 A G 1 0.427844702621603 1 DEL 1 Missense_Mutation 20 0.25 0 TCGA-CD-A487-01 TP53 chr17 7683547 7674220 C T 1 0.854029978806244 1 DEL 1 Missense_Mutation 77 0.402597402597403 0 TCGA-CD-A487-01 DNAH9 chr17 11769794 11768549 G T 0.87 0.414557826209877 0.988064501976939 DEL 1 Missense_Mutation 53 0.150943396226415 0 TCGA-CD-A487-01 ZNF208 chr19 21982059 21973703 T G 0.99 0.508612767566594 1 DEL 1 Missense_Mutation 64 0.171875 0 TCGA-BR-6705-01 APOB chr2 21042978 21042384 T G 0.77 0.512742655216674 0.977470554122726 DEL 0 Nonsense_Mutation 183 0.12568306010929 1 TCGA-BR-6705-01 ERBB4 chr2 212547684 212538520 G T 0.44 0.240688852335378 0.776854156627452 DEL 0 Nonsense_Mutation 138 0.072463768115942 1 TCGA-BR-6705-01 CMYA5 chr5 79740510 79738915 T A 0.73 0.40447753850259 0.97830088125229 DEL 0 Nonsense_Mutation 92 0.119565217391304 1 TCGA-BR-6705-01 DNAH11 chr7 21809204 21808003 G T 1 0.456017617949407 1 DEL 1 Missense_Mutation 17 0.294117647058824 0 TCGA-BR-6705-01 TAF1L chr9 32636679 32632189 T C 0.49 0.266233768686143 0.845033693099057 DEL 0 Nonsense_Mutation 125 0.08 1 TCGA-BR-6705-01 CDH23 chr10 71793381 71785063 C T 0.34 0.146874202576031 0.752674095525441 DEL 0 Nonsense_Mutation 89 0.0561797752808989 1 TCGA-BR-A44U-01 FLG2 chr1 152360153 152354965 T G 0.94 0.791827534578257 1 DEL 1 Missense_Mutation 370 0.308108108108108 0 TCGA-BR-A44U-01 LRP1B chr2 140907906 140903163 C G 0.76 0.462257635901641 0.979066016105599 DEL 0 Nonsense_Mutation 56 0.25 1 TCGA-BR-A44U-01 TTN chr2 178743342 178739820 C T 0.88 0.69060658139169 0.989234801975854 DEL 1 Missense_Mutation 194 0.288659793814433 0 TCGA-BR-A44U-01 ADGRB3 chr6 69360609 69355854 C T 0.98 0.678373610078672 1 DEL 1 Missense_Mutation 90 0.322222222222222 0 TCGA-BR-A44U-01 RIMS1 chr6 72188663 72179726 A C 0.72 0.47520445246091 0.959570311846241 DEL 0 Nonsense_Mutation 85 0.235294117647059 1 TCGA-BR-A44U-01 CSMD3 chr8 112684204 112682586 G A 0.81 0.600357317001437 0.977713990033457 DEL 0 Nonsense_Mutation 323 0.13312693498452 1 TCGA-BR-A44U-01 PCDH15 chr10 53944128 53938874 A C 0.94 0.656800417240326 1 DEL 1 Missense_Mutation 94 0.308510638297872 0 TCGA-BR-A44U-01 SACS chr13 23338886 23332565 TGCTCCTTAAGACTTT - 0.63 0.428329266731267 0.868112233085964 DEL 0 Nonsense_Mutation 117 0.205128205128205 1 TCGA-BR-A44U-01 EPB41L3 chr18 5397404 5397267 C T 1 0.846884209873709 1 DEL 1 Missense_Mutation 123 0.414634146341463 0 TCGA-VQ-A8PJ-01 NRXN1 chr2 49923165 49922131 A G 0.93 0.436330217786051 0.989818972379245 DEL 1 Missense_Mutation 41 0.195121951219512 0 TCGA-VQ-A8PJ-01 CNTNAP5 chr2 124451814 124446857 C T 1 0.641344912377817 1 DEL 1 Missense_Mutation 31 0.354838709677419 0 TCGA-VQ-A8PJ-01 LRP1B chr2 141018618 141015888 T G 0.82 0.433973784372086 0.98616108778988 DEL 1 Missense_Mutation 58 0.172413793103448 0 TCGA-VQ-A8PJ-01 TTN chr2 178692666 178682830 T G 1 0.757110470765496 1 DEL 1 Missense_Mutation 31 0.483870967741935 0 TCGA-VQ-A8PJ-01 DNAH7 chr2 195928164 195923612 G A 1 0.600662543990989 1 DEL 1 Missense_Mutation 45 0.244444444444444 0 TCGA-VQ-A8PJ-01 FAT3 chr11 92361338 92353913 T G 1 0.795911181251339 1 DEL 0 Silent 27 0.62962962962963 0 TCGA-VQ-A8PJ-01 DYNC2H1 chr11 103206926 103204948 A T 0.82 0.111093982586734 0.980492069409367 DEL 1 Missense_Mutation 7 0.142857142857143 0 TCGA-VQ-A8PJ-01 SACS chr13 23344719 23340107 C T 1 0.724728499963221 1 DEL 1 Missense_Mutation 40 0.35 0 TCGA-VQ-A8PJ-01 DNAH9 chr17 11683715 11679871 A C 1 0.571810100976332 1 DEL 1 Missense_Mutation 57 0.228070175438596 0 TCGA-VQ-A8PJ-01 EPB41L3 chr18 5402996 5394734 T G 1 0.73077272925334 1 DEL 1 Missense_Mutation 105 0.20952380952381 0 TCGA-VQ-A8PJ-01 ZNF208 chr19 21977712 21974086 T G 0.68 0.379426046004756 0.968964581621747 DEL 1 Missense_Mutation 93 0.118279569892473 0 TCGA-BR-4366-01 SPTA1 chr1 158616192 158615294 C G 0.88 0.69487347121946 0.9896287730682 DEL 1 Missense_Mutation 686 0.102040816326531 0 TCGA-BR-4366-01 LRP1B chr2 140873739 140867767 A T 1 0.910711795451791 1 DEL 1 Missense_Mutation 167 0.359281437125749 0 TCGA-BR-4366-01 RIMS1 chr6 72253071 72245847 C T 0.37 0.159245379305293 0.799337960343279 DEL 0 Nonsense_Mutation 76 0.0657894736842105 1 TCGA-BR-4366-01 FAM135B chr8 138155950 138152542 T G 1 0.907127820210491 1 DEL 1 Missense_Mutation 242 0.272727272727273 0 TCGA-BR-4366-01 LRRK2 chr12 40269505 40259575 T G 0.4 0.246629409249337 0.632134478138415 DEL 0 Nonsense_Mutation 224 0.0714285714285714 1 TCGA-BR-4366-01 TP53 chr17 7684027 7675113 G A 1 0.95428363443496 1 DEL 0 Silent 103 0.815533980582524 0 TCGA-BR-4366-01 ZNF536 chr19 30446224 30445000 G A 1 0.837757779124602 1 DEL 1 Missense_Mutation 712 0.0828651685393258 0 TCGA-CD-8527-01 SPTA1 chr1 158671205 158667971 T G 1 0.765208144401993 1 DEL 1 Missense_Mutation 115 0.295652173913043 0 TCGA-CD-8527-01 APOB chr2 21034570 21027943 G T 0.81 0.538270874502937 0.983711371478053 DEL 1 Missense_Mutation 109 0.201834862385321 0 TCGA-CD-8527-01 LRP1B chr2 140279920 140270346 G T 0.52 0.254159618539863 0.913612494240555 DEL 0 Nonsense_Mutation 54 0.12962962962963 1 TCGA-CD-8527-01 LRP1B chr2 140602121 140598805 T G 0.67 0.280928469859699 0.975302605286785 DEL 1 Missense_Mutation 30 0.166666666666667 0 TCGA-CD-8527-01 TTN chr2 178569189 178565688 T C 0.27 0.156808973952078 0.447893837392502 DEL 0 Nonsense_Mutation 191 0.0680628272251309 1 TCGA-CD-8527-01 FAT4 chr4 125424689 125415802 T A 0.95 0.543714653326427 1 DEL 1 Missense_Mutation 41 0.317073170731707 0 TCGA-CD-8527-01 CMYA5 chr5 79730404 79730034 G T 0.95 0.594211401575428 1 DEL 1 Missense_Mutation 57 0.315789473684211 0 TCGA-CD-8527-01 SYNE1 chr6 152357275 152350294 T G 0.97 0.622722502776273 1 DEL 1 Missense_Mutation 91 0.241758241758242 0 TCGA-CD-8527-01 CSMD1 chr8 3110052 3106533 C T 0.47 0.188806646836046 0.901629219210029 DEL 0 Nonsense_Mutation 17 0.235294117647059 1 TCGA-CD-8527-01 CSMD1 chr8 3236604 3230070 A C 1 0.727342080907715 1 DEL 1 Missense_Mutation 29 0.620689655172414 0 TCGA-CD-8527-01 GRM5 chr11 88526792 88525322 C G 1 0.813468069734135 1 DEL 1 Missense_Mutation 313 0.258785942492013 0 TCGA-CD-8527-01 LRRK2 chr12 40374043 40367656 G T 1 0.616032148273489 1 DEL 1 Missense_Mutation 31 0.354838709677419 0 TCGA-CD-8527-01 PCDH17 chr13 57637054 57635023 C A 0.95 0.512061452151868 1 DEL 1 Missense_Mutation 35 0.314285714285714 0 TCGA-CD-8527-01 NALCN chr13 101260251 101258463 C T 0.7 0.400361536749278 0.970555849952032 DEL 1 Missense_Mutation 47 0.234042553191489 0 TCGA-CD-8527-01 AHNAK2 chr14 104947578 104940644 G A 0.49 0.227172630256957 0.90638397062855 DEL 0 Nonsense_Mutation 49 0.122448979591837 1 TCGA-CD-8527-01 DCC chr18 53468748 53467936 A G 1 0.83770269480068 1 DEL 1 Missense_Mutation 78 0.474358974358974 0 TCGA-CD-8527-01 RYR1 chr19 38526040 38517433 G A 1 0.919701647234593 1 DEL 1 Missense_Mutation 71 0.732394366197183 0 TCGA-BR-A4CS-01 FLG chr1 152310226 152306043 TGTC - 0.87 0.559316441911727 0.98953110110058 DEL 1 Missense_Mutation 145 0.144827586206897 0 TCGA-BR-A4CS-01 CMYA5 chr5 79734930 79732168 G A 1 0.682394269717403 1 DEL 1 Missense_Mutation 128 0.2109375 0 TCGA-BR-A4CS-01 DNAH11 chr7 21908180 21900120 G T 1 0.941385904589067 1 DEL 0 Silent 120 0.55 0 TCGA-BR-A4CS-01 CSMD3 chr8 112801820 112800191 C T 0.49 0.270392581935451 0.831066509725001 DEL 0 Nonsense_Mutation 204 0.053921568627451 1 TCGA-BR-A4CS-01 LRRK2 chr12 40304028 40298466 A T 0.8 0.542772014132812 0.982686575336931 DEL 1 Missense_Mutation 187 0.133689839572193 0 TCGA-BR-A4CS-01 NBEA chr13 35437720 35432336 C T 0.91 0.308586237797624 0.9870193002233 DEL 1 Missense_Mutation 22 0.181818181818182 0 TCGA-BR-A4CS-01 TP53 chr17 7680219 7674238 C G 1 0.854162136902004 1 DEL 1 Missense_Mutation 120 0.333333333333333 0 TCGA-BR-8284-01 TTN chr2 178547787 178543548 A G 0.97 0.313312630957269 0.987894608065372 DEL 1 Missense_Mutation 36 0.111111111111111 0 TCGA-BR-8284-01 PCDH10 chr4 133152645 133152046 G A 1 0.616512129375943 1 DEL 1 Missense_Mutation 72 0.166666666666667 0 TCGA-BR-8284-01 DNAH5 chr5 13724881 13717461 C T 0.94 0.345939070457723 0.988233716376711 DEL 1 Missense_Mutation 57 0.087719298245614 0 TCGA-BR-8284-01 CMYA5 chr5 79733399 79729159 C T 0.8 0.417873626365071 0.985253579025005 DEL 1 Missense_Mutation 134 0.0746268656716418 0 TCGA-BR-8284-01 SDK1 chr7 4151846 4145877 G A 1 0.455364229712917 1 DEL 1 Missense_Mutation 64 0.109375 0 TCGA-BR-8284-01 DNAH11 chr7 21749253 21739623 G A 1 0.760308047586219 1 DEL 1 Missense_Mutation 97 0.195876288659794 0 TCGA-BR-8284-01 ABCA13 chr7 48352692 48352365 C A 1 0.44723350988627 1 DEL 1 Missense_Mutation 48 0.125 0 TCGA-BR-8284-01 PLXNA4 chr7 132147629 132145267 C T 0.58 0.242970715717142 0.964200591942698 DEL 0 Nonsense_Mutation 93 0.0537634408602151 1 TCGA-BR-8284-01 CSMD3 chr8 112694559 112690039 C A 1 0.625710530451257 1 DEL 1 Missense_Mutation 172 0.104651162790698 0 TCGA-BR-8284-01 TAF1L chr9 32640092 32634325 C T 0.85 0.575306089401133 0.988060238030546 DEL 1 Missense_Mutation 278 0.0971223021582734 0 TCGA-BR-8284-01 DCLK1 chr13 36119724 36111894 C T 1 0.794270930336376 1 DEL 1 Missense_Mutation 86 0.255813953488372 0 TCGA-BR-8284-01 NALCN chr13 101066729 101059903 C T 1 0.528826402851267 1 DEL 1 Missense_Mutation 75 0.133333333333333 0 TCGA-BR-8284-01 DNAH3 chr16 21038388 21031155 G A 1 0.528826402851267 1 DEL 1 Missense_Mutation 75 0.133333333333333 0 TCGA-BR-8284-01 DNAH9 chr17 11912393 11902773 G T 1 0.780230287823923 1 DEL 1 Missense_Mutation 98 0.224489795918367 0 TCGA-BR-8284-01 DSEL chr18 67517816 67512486 A G 1 0.858871727650693 1 DEL 0 Silent 78 0.371794871794872 0 TCGA-VQ-A8E0-01 SPTA1 chr1 158672290 158662852 C A 1 0.835299595028807 1 DEL 1 Missense_Mutation 123 0.276422764227642 0 TCGA-VQ-A8E0-01 ABCA13 chr7 48282607 48275364 C A 1 0.958413069592821 1 DEL 0 Silent 239 0.439330543933054 0 TCGA-VQ-A8E0-01 LRRK2 chr12 40374827 40364871 C A 1 0.743861953720223 1 DEL 1 Missense_Mutation 70 0.257142857142857 0 TCGA-VQ-A8E0-01 TP53 chr17 7673156 7669617 CAGTCTGA - 1 0.931253110334848 1 DEL 1 Missense_Mutation 212 0.377358490566038 0 TCGA-D7-5578-01 SPTA1 chr1 158686516 158677827 T C 1 0.870721467582131 1 DEL 1 Missense_Mutation 150 0.393333333333333 0 TCGA-D7-5578-01 RYR2 chr1 237598903 237589903 G C 1 0.725527761658668 1 DEL 1 Missense_Mutation 93 0.32258064516129 0 TCGA-D7-5578-01 RYR2 chr1 237616253 237614044 T C 1 0.640403892248236 1 DEL 1 Missense_Mutation 75 0.293333333333333 0 TCGA-D7-5578-01 NEB chr2 151548720 151541457 A C 0.95 0.673617126495392 1 DEL 1 Missense_Mutation 118 0.279661016949153 0 TCGA-D7-5578-01 ABCA12 chr2 215032443 215026885 C A 0.89 0.728257709871952 0.988733667116033 DEL 1 Missense_Mutation 329 0.261398176291793 0 TCGA-D7-5578-01 PIK3CA chr3 179222278 179218303 G A 0.28 0.151911028738673 0.493206691743956 DEL 0 Nonsense_Mutation 120 0.0833333333333333 1 TCGA-D7-5578-01 FAT4 chr4 125320480 125318122 A C 1 0.712042249011685 1 DEL 1 Missense_Mutation 109 0.302752293577982 0 TCGA-D7-5578-01 FAT4 chr4 125458833 125451104 G A 1 0.886597014569568 1 DEL 1 Missense_Mutation 388 0.327319587628866 0 TCGA-D7-5578-01 FAT4 chr4 125459245 125451430 A C 0.87 0.70803637835618 0.985999211327446 DEL 1 Missense_Mutation 304 0.256578947368421 0 TCGA-D7-5578-01 CMYA5 chr5 79731387 79731134 G A 0.9 0.637716533156427 1 DEL 1 Missense_Mutation 117 0.264957264957265 0 TCGA-D7-5578-01 CMYA5 chr5 79736389 79735516 G A 0.96 0.773434882906386 1 DEL 1 Missense_Mutation 271 0.284132841328413 0 TCGA-D7-5578-01 ADGRB3 chr6 68952300 68943925 C G 0.95 0.72414606718121 1 DEL 1 Missense_Mutation 178 0.280898876404494 0 TCGA-D7-5578-01 ADGRB3 chr6 68956735 68956717 G A 0.98 0.71558021429014 1 DEL 1 Missense_Mutation 138 0.289855072463768 0 TCGA-D7-5578-01 DNAH11 chr7 21609549 21599809 C A 0.63 0.364474523463507 0.939440244947265 DEL 0 Nonsense_Mutation 65 0.184615384615385 1 TCGA-D7-5578-01 RIMS2 chr8 103895775 103886095 A T 0.67 0.453272728482923 0.923682516182942 DEL 0 Nonsense_Mutation 158 0.151898734177215 1 TCGA-D7-5578-01 NAV3 chr12 78126140 78121954 A T 1 0.74938947459622 1 DEL 1 Missense_Mutation 141 0.304964539007092 0 TCGA-D7-5578-01 NBEA chr13 35168150 35159156 A C 1 0.950675585620986 1 DEL 1 Missense_Mutation 165 0.6 0 TCGA-D7-5578-01 AHNAK2 chr14 104951779 104942426 T C 1 0.836122714708122 1 DEL 1 Missense_Mutation 351 0.301994301994302 0 TCGA-D7-5578-01 TP53 chr17 7673931 7673809 C T 1 0.785493178268213 1 DEL 1 Missense_Mutation 33 0.575757575757576 0 TCGA-D7-5578-01 ZNF536 chr19 30556122 30549433 A G 1 0.675185120590517 1 DEL 1 Missense_Mutation 91 0.296703296703297 0 TCGA-D7-5578-01 RYR1 chr19 38462244 38455304 G A 1 0.84485488348621 1 DEL 1 Missense_Mutation 227 0.330396475770925 0 TCGA-BR-6707-01 ARID1A chr1 26777708 26775102 A - 1 0.896177547500098 1 DEL 1 Missense_Mutation 122 0.426229508196721 0 TCGA-BR-6707-01 USH2A chr1 215632962 215628977 C T 1 0.813865638836735 1 DEL 1 Missense_Mutation 192 0.270833333333333 0 TCGA-BR-6707-01 OBSCN chr1 228222572 228217125 G C 1 0.689672862574515 1 DEL 1 Missense_Mutation 110 0.245454545454545 0 TCGA-BR-6707-01 PIK3CA chr3 179223407 179218303 G A 1 0.901742322688679 1 DEL 1 Missense_Mutation 104 0.451923076923077 0 TCGA-IN-A6RP-01 COL11A1 chr1 102891444 102887023 T A 1 0.744077547938936 1 DEL 1 Missense_Mutation 88 0.261363636363636 0 TCGA-IN-A6RP-01 CNTNAP5 chr2 124513413 124504383 C G 1 0.839234107168573 1 DEL 1 Missense_Mutation 99 0.313131313131313 0 TCGA-IN-A6RP-01 THSD7B chr2 137419657 137411859 C A 1 0.492614725584735 1 DEL 1 Missense_Mutation 33 0.212121212121212 0 TCGA-IN-A6RP-01 TTN chr2 178542303 178536513 C T 1 0.689296196603287 1 DEL 1 Missense_Mutation 76 0.223684210526316 0 TCGA-IN-A6RP-01 TTN chr2 178792946 178792134 C G 0.76 0.271929529060681 0.982322387161985 DEL 1 Missense_Mutation 34 0.117647058823529 0 TCGA-IN-A6RP-01 APC chr5 112841020 112840255 - A 1 0.874534332562505 1 DEL 1 Missense_Mutation 70 0.485714285714286 0 TCGA-IN-A6RP-01 COL12A1 chr6 75188569 75181122 - A 1 0.749650695748158 1 DEL 1 Missense_Mutation 46 0.369565217391304 0 TCGA-IN-A6RP-01 SDK1 chr7 4076881 4067886 C A 1 0.442619603589324 1 DEL 1 Missense_Mutation 48 0.145833333333333 0 TCGA-IN-A6RP-01 CSMD3 chr8 112922316 112921667 T G 1 0.891236993003274 1 DEL 1 Missense_Mutation 120 0.366666666666667 0 TCGA-IN-A6RP-01 NBEA chr13 35197655 35196064 G A 1 0.652220306941055 1 DEL 1 Missense_Mutation 71 0.197183098591549 0 TCGA-IN-A6RP-01 TP53 chr17 7679141 7674221 G A 1 0.611410292749874 1 DEL 1 Missense_Mutation 92 0.173913043478261 0 TCGA-IN-A6RP-01 EPB41L3 chr18 5421343 5416300 G A 1 0.708394751068059 1 DEL 1 Missense_Mutation 135 0.17037037037037 0 TCGA-IN-A6RP-01 MUC16 chr19 8971012 8964208 G T 0.87 0.448555818197035 0.988469162146521 DEL 1 Missense_Mutation 74 0.135135135135135 0 TCGA-VQ-A94U-01 FLG chr1 152308004 152306306 T G 0.6 0.506704502302988 0.705857259317815 DEL 0 Nonsense_Mutation 1176 0.107993197278912 1 TCGA-VQ-A94U-01 FLG chr1 152316953 152311243 T G 1 0.854214485897146 1 DEL 1 Missense_Mutation 593 0.192242833052277 0 TCGA-VQ-A94U-01 OBSCN chr1 228270662 228268751 G A 0.84 0.483072380950565 0.987581298898995 DEL 1 Missense_Mutation 71 0.183098591549296 0 TCGA-VQ-A94U-01 APOB chr2 21017632 21009925 C A 0.94 0.63398309018676 1 DEL 1 Missense_Mutation 132 0.204545454545455 0 TCGA-VQ-A94U-01 XIRP2 chr2 167241712 167239940 A T 1 0.603753782429566 1 DEL 1 Missense_Mutation 30 0.366666666666667 0 TCGA-VQ-A94U-01 XIRP2 chr2 167251433 167245595 A T 1 0.687725217212386 1 DEL 1 Missense_Mutation 42 0.380952380952381 0 TCGA-VQ-A94U-01 TTN chr2 178724857 178722543 C T 0.25 0.105317444316975 0.543567117692265 DEL 0 Nonsense_Mutation 72 0.0694444444444444 1 TCGA-VQ-A94U-01 CTNND2 chr5 11369688 11364837 G A 1 0.425353567501336 1 DEL 1 Missense_Mutation 25 0.24 0 TCGA-VQ-A94U-01 FAT2 chr5 151571872 151566030 C T 1 0.596579158410538 1 DEL 1 Missense_Mutation 36 0.333333333333333 0 TCGA-VQ-A94U-01 TRPS1 chr8 115604189 115603934 G A 1 0.780341103220315 1 DEL 1 Missense_Mutation 61 0.344262295081967 0 TCGA-VQ-A94U-01 LRRK2 chr12 40284051 40274855 A C 1 0.450250004532371 1 DEL 1 Missense_Mutation 30 0.233333333333333 0 TCGA-VQ-A94U-01 NAV3 chr12 78124316 78119506 G A 1 0.632487685289515 1 DEL 1 Missense_Mutation 101 0.217821782178218 0 TCGA-VQ-A94U-01 PCDH17 chr13 57732538 57724737 G T 1 0.590601302962473 1 DEL 1 Missense_Mutation 52 0.25 0 TCGA-VQ-A94U-01 TP53 chr17 7683681 7674906 T A 1 0.879310763092825 1 DEL 1 Missense_Mutation 56 0.625 0 TCGA-VQ-A94U-01 DSEL chr18 67515847 67511393 G C 1 0.718928645582733 1 DEL 1 Missense_Mutation 77 0.324675324675325 0 TCGA-VQ-AA6K-01 TTN chr2 178599310 178599259 G A 0.72 0.504124335181195 0.953287804750165 DEL 0 Nonsense_Mutation 118 0.220338983050847 1 TCGA-VQ-AA6K-01 PIK3CA chr3 179219899 179218294 G A 1 0.696625085765599 1 DEL 1 Missense_Mutation 42 0.404761904761905 0 TCGA-VQ-AA6K-01 GLI3 chr7 41980163 41972482 G T 0.19 0.0775056572366085 0.410140579243045 DEL 0 Nonsense_Mutation 88 0.0568181818181818 1 TCGA-VQ-AA6K-01 DNAH3 chr16 20972040 20963680 C T 1 0.644328025276054 1 DEL 1 Missense_Mutation 50 0.34 0 TCGA-VQ-A8PF-01 ARID1A chr1 26784288 26779059 C T 1 0.960270573797892 1 DEL 0 Silent 241 0.439834024896266 0 TCGA-VQ-A8PF-01 CNTNAP5 chr2 124454888 124446908 G A 0.8 0.237306903539316 0.983378569644562 DEL 1 Missense_Mutation 36 0.0833333333333333 0 TCGA-VQ-A8PF-01 NEB chr2 151616285 151614499 A G 0.92 0.536104396845576 1 DEL 1 Missense_Mutation 168 0.0952380952380952 0 TCGA-VQ-A8PF-01 NEB chr2 151731591 151724873 G A 1 0.416052404865257 1 DEL 1 Missense_Mutation 34 0.147058823529412 0 TCGA-VQ-A8PF-01 ABCA12 chr2 214943490 214934175 G C 0.72 0.335383691694446 0.979458481057792 DEL 1 Missense_Mutation 94 0.074468085106383 0 TCGA-VQ-A8PF-01 COL6A3 chr2 237402349 237395043 C T 0.77 0.332145893046049 0.983322885329498 DEL 1 Missense_Mutation 75 0.08 0 TCGA-VQ-A8PF-01 CMYA5 chr5 79738649 79733633 A G 0.77 0.356168617665862 0.98359638259607 DEL 1 Missense_Mutation 87 0.0804597701149425 0 TCGA-VQ-A8PF-01 RELN chr7 103661260 103654139 C T 1 0.473696300975377 1 DEL 1 Missense_Mutation 93 0.0967741935483871 0 TCGA-VQ-A8PF-01 RIMS2 chr8 103889807 103885941 T G 0.61 0.199068640207365 0.97450746516306 DEL 1 Missense_Mutation 47 0.0638297872340425 0 TCGA-VQ-A8PF-01 AHNAK2 chr14 104949447 104948304 C A 0.53 0.308835523867259 0.86411489621909 DEL 0 Nonsense_Mutation 236 0.0550847457627119 1 TCGA-VQ-A8PF-01 RYR1 chr19 38509647 38505826 G A 1 0.327638313716933 0.989116988496553 DEL 1 Missense_Mutation 36 0.111111111111111 0 TCGA-B7-5818-01 TMEM121 chr14 105244995 105533894 G T 1 1 1 DEL 1 Missense_Mutation 84 1 0 TCGA-B7-A5TJ-01 CYC1 chr8 144086395 144182542 G T 1 1 1 INS 1 Missense_Mutation 30 5 0 TCGA-B7-A5TJ-01 SHARPIN chr8 144092116 144182542 G T 1 1 1 INS 1 Missense_Mutation 30 5 0 TCGA-B7-A5TJ-01 MAF1 chr8 144084941 144182542 G T 1 1 1 INS 1 Missense_Mutation 30 5 0 TCGA-B7-A5TJ-01 KIAA1875 chr8 144084716 144182542 G T 1 1 1 INS 1 Missense_Mutation 30 5 0 TCGA-B7-A5TJ-01 HGH1 chr8 144087317 144182542 G T 1 1 1 INS 1 Missense_Mutation 30 5 0 TCGA-BR-4191-01 GOLGA6L2 chr15 23442324 23936661 G T 1 1 1 INS 1 Missense_Mutation 369 3 0 TCGA-BR-4255-01 LYRM5 chr12 25187744 25249135 G T 0.96 0.11925 0.98539 INS 0 Nonsense_Mutation 120 14 1 TCGA-BR-4255-01 KRAS chr12 25188045 25249135 G T 0.96 0.11925 0.98539 INS 0 Nonsense_Mutation 120 14 1 TCGA-BR-4257-01 FARP2 chr2 241079363 241537572 G T 1 1 1 INS 1 Missense_Mutation 265 4 0 TCGA-BR-4257-01 STK25 chr2 241079137 241537572 G T 1 1 1 INS 1 Missense_Mutation 265 4 0 TCGA-BR-4257-01 GOLGA6L2 chr15 23441015 23739469 G T 1 1 1 INS 1 Missense_Mutation 213 3 0 TCGA-BR-4357-01 FARP2 chr2 241078261 241537572 G T 1 1 1 INS 1 Missense_Mutation 265 5 0 TCGA-BR-4357-01 STK25 chr2 241079700 241537572 G T 1 1 1 INS 1 Missense_Mutation 265 5 0 TCGA-BR-4357-01 AC108925.1 chr8 127450077 127816452 G T 1 1 1 INS 1 Missense_Mutation 288 10 0 TCGA-BR-4357-01 MYC chr8 127449598 127816452 G T 1 1 1 INS 1 Missense_Mutation 288 10 0 TCGA-BR-4357-01 GRINA chr8 143936151 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 SPATC1 chr8 143943904 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 OPLAH chr8 143944957 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 EXOSC4 chr8 143942689 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 GPAA1 chr8 143943612 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 CYC1 chr8 143937702 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 SHARPIN chr8 143940112 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 MAF1 chr8 143940193 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 KIAA1875 chr8 143942012 144123090 G T 1 1 1 INS 1 Missense_Mutation 51 8 0 TCGA-BR-4357-01 HGH1 chr8 144126709 144182542 G T 1 1 1 INS 1 Missense_Mutation 11 6 0 TCGA-BR-4357-01 NEUROD2 chr17 39517528 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 PPP1R1B chr17 39516289 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 STARD3 chr17 39523415 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 TCAP chr17 39519487 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 PNMT chr17 39518972 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 PGAP3 chr17 39517927 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 ERBB2 chr17 39518433 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 MIEN1 chr17 39522529 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 GRB7 chr17 39523476 39761259 G T NA 0.01 1 INS 0 Nonsense_Mutation 144 14 1 TCGA-BR-4357-01 KRT14 chr17 41547302 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 KRT16 chr17 41548076 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 EIF1 chr17 41547401 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 GAST chr17 41542588 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 HAP1 chr17 41546318 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 JUP chr17 41546268 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 P3H4 chr17 41548223 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 FKBP10 chr17 41547114 41855182 G T 1 1 1 INS 1 Missense_Mutation 141 8 0 TCGA-BR-4357-01 C19orf12 chr19 29568191 29983260 G T NA 0.01 1 INS 0 Nonsense_Mutation 310 14 1 TCGA-BR-4357-01 CCNE1 chr19 29563271 29983260 G T NA 0.01 1 INS 0 Nonsense_Mutation 310 14 1 TCGA-BR-4366-01 GRINA chr8 143885516 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 SPATC1 chr8 143889649 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 OPLAH chr8 143890436 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 EXOSC4 chr8 143891586 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 GPAA1 chr8 143884795 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 CYC1 chr8 143885380 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 SHARPIN chr8 143888783 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 MAF1 chr8 143889973 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 KIAA1875 chr8 143886071 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 HGH1 chr8 143883369 144182542 G T 1 1 1 INS 1 Missense_Mutation 69 6 0 TCGA-BR-4366-01 C19orf12 chr19 29490943 29757522 G T 0.38 0.04097 0.91169 INS 1 Missense_Mutation 186 12 0 TCGA-BR-6456-01 RNH1 chr11 464171 955029 G T 1 1 1 INS 1 Missense_Mutation 127 3 0 TCGA-BR-6456-01 HRAS chr11 458445 955029 G T 1 1 1 INS 1 Missense_Mutation 127 3 0 TCGA-BR-6456-01 LRRC56 chr11 466001 955029 G T 1 1 1 INS 1 Missense_Mutation 127 3 0 TCGA-BR-6456-01 LMNTD2 chr11 459120 955029 G T 1 1 1 INS 1 Missense_Mutation 127 3 0 TCGA-BR-6456-01 RASSF7 chr11 464939 955029 G T 1 1 1 INS 1 Missense_Mutation 127 3 0 TCGA-BR-6705-01 AC108925.1 chr8 127444129 127899680 G T 0.02 0.02313 0.86994 INS 1 Missense_Mutation 335 11 0 TCGA-BR-6705-01 MYC chr8 127441790 127899680 G T 0.02 0.02313 0.86994 INS 1 Missense_Mutation 335 11 0 TCGA-BR-6705-01 KRAS chr12 25225900 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 78 14 1 TCGA-BR-6709-01 LYRM5 chr12 25199031 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-BR-6709-01 KRAS chr12 25194728 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-BR-6709-01 GOLGA6L2 chr15 23438860 23725876 G T 1 1 1 INS 1 Missense_Mutation 208 3 0 TCGA-BR-6801-01 RBL1 chr20 36902332 37147626 G T 1 1 1 INS 1 Missense_Mutation 207 8 0 TCGA-BR-7196-01 TMEM121 chr14 105529113 105533894 G T 1 1 1 INS 1 Missense_Mutation 2 5 0 TCGA-BR-7197-01 FARP2 chr2 241055670 241537572 G T 1 1 1 INS 1 Missense_Mutation 278 3 0 TCGA-BR-7197-01 STK25 chr2 241057315 241537572 G T 1 1 1 INS 1 Missense_Mutation 278 3 0 TCGA-BR-7197-01 NEUROD2 chr17 39333039 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 PPP1R1B chr17 39331074 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 STARD3 chr17 39336206 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 TCAP chr17 39338346 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 PNMT chr17 39333687 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 PGAP3 chr17 39339225 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 ERBB2 chr17 39340542 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 MIEN1 chr17 39339355 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 GRB7 chr17 39339340 39786486 G T 1 1 1 INS 1 Missense_Mutation 228 3 0 TCGA-BR-7197-01 KRT14 chr17 41512139 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 KRT16 chr17 41515801 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 EIF1 chr17 41518077 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 GAST chr17 41510854 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 HAP1 chr17 41512949 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 JUP chr17 41513907 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 P3H4 chr17 41515101 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 FKBP10 chr17 41512871 41899426 G T 1 1 1 INS 1 Missense_Mutation 162 3 0 TCGA-BR-7197-01 A1BG chr19 57893265 58370362 G T 1 1 1 INS 1 Missense_Mutation 275 3 0 TCGA-BR-7197-01 ZNF497 chr19 57893188 58370362 G T 1 1 1 INS 1 Missense_Mutation 275 3 0 TCGA-BR-7197-01 RBL1 chr20 37005181 37129861 G T 1 1 1 INS 1 Missense_Mutation 161 4 0 TCGA-BR-7715-01 KRT14 chr17 41293437 41603820 G T 1 1 1 INS 1 Missense_Mutation 213 11 0 TCGA-BR-7715-01 KRT16 chr17 41611663 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 EIF1 chr17 41610088 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 GAST chr17 41606179 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 HAP1 chr17 41606841 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 JUP chr17 41613309 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 P3H4 chr17 41611043 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 FKBP10 chr17 41608768 42037468 G T NA 0.01 1 INS 0 Nonsense_Mutation 207 14 1 TCGA-BR-7715-01 C19orf12 chr19 29562627 29815913 G T NA 0.01 1 INS 0 Nonsense_Mutation 184 14 1 TCGA-BR-7715-01 RBL1 chr20 36902651 37129861 G T 1 1 1 INS 1 Missense_Mutation 204 9 0 TCGA-BR-7716-01 FARP2 chr2 241270269 241478393 G T 1 1 1 INS 1 Missense_Mutation 104 4 0 TCGA-BR-7716-01 STK25 chr2 241487915 241537572 G T 1 1 1 INS 1 Missense_Mutation 45 5 0 TCGA-BR-7716-01 AC108925.1 chr8 127593159 127915818 G T NA 0.01 1 INS 0 Nonsense_Mutation 227 14 1 TCGA-BR-7716-01 MYC chr8 127597658 127915818 G T NA 0.01 1 INS 0 Nonsense_Mutation 227 14 1 TCGA-BR-7717-01 TMEM121 chr14 105522929 105533894 G T 1 1 1 INS 1 Missense_Mutation 2 3 0 TCGA-BR-7723-01 AC108925.1 chr8 127377442 127710690 G T 1 1 1 INS 1 Missense_Mutation 288 6 0 TCGA-BR-7723-01 GRINA chr8 143899502 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 SPATC1 chr8 143906560 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 OPLAH chr8 143906853 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 EXOSC4 chr8 143902228 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 GPAA1 chr8 143907995 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 CYC1 chr8 143898666 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 SHARPIN chr8 143900109 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 MAF1 chr8 143908441 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 KIAA1875 chr8 143900782 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 HGH1 chr8 143899983 144182542 G T 1 1 1 INS 1 Missense_Mutation 67 4 0 TCGA-BR-7723-01 GAST chr17 41712841 41861239 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-BR-7723-01 HAP1 chr17 41715103 41861239 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-BR-7723-01 JUP chr17 41714250 41861239 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-BR-7723-01 P3H4 chr17 41719090 41861239 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-BR-7723-01 FKBP10 chr17 41713914 41861239 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-BR-7723-01 CCNE1 chr19 29813997 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 174 14 1 TCGA-BR-7723-01 URI1 chr19 29813065 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 174 14 1 TCGA-BR-7723-01 RBL1 chr20 36972028 37094427 G T 1 1 1 INS 1 Missense_Mutation 162 11 0 TCGA-BR-7851-01 GOLGA6L2 chr15 23441275 23766299 G T 1 1 1 INS 1 Missense_Mutation 231 4 0 TCGA-BR-7901-01 GOLGA6L2 chr15 23444351 23830145 G T 1 1 1 INS 1 Missense_Mutation 278 4 0 TCGA-BR-7901-01 CCNE1 chr19 29816784 30064934 G T NA 0.01 1 INS 0 Nonsense_Mutation 189 14 1 TCGA-BR-7901-01 URI1 chr19 29818949 30064934 G T NA 0.01 1 INS 0 Nonsense_Mutation 189 14 1 TCGA-BR-7959-01 AC108925.1 chr8 127467738 127958768 G T NA 0.01 1 INS 0 Nonsense_Mutation 353 14 1 TCGA-BR-7959-01 MYC chr8 127463920 127958768 G T NA 0.01 1 INS 0 Nonsense_Mutation 353 14 1 TCGA-BR-8060-01 C19orf12 chr19 29624257 29809086 G T NA 0.01 1 INS 0 Nonsense_Mutation 110 14 1 TCGA-BR-8060-01 CCNE1 chr19 29811909 29868317 G T NA 0.01 1 INS 0 Nonsense_Mutation 69 14 1 TCGA-BR-8060-01 URI1 chr19 29931485 30037623 G T NA 0.01 1 INS 0 Nonsense_Mutation 68 14 1 TCGA-BR-8077-01 GRINA chr8 143830848 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 SPATC1 chr8 143835678 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 OPLAH chr8 143829418 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 EXOSC4 chr8 143828436 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 GPAA1 chr8 143835956 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 CYC1 chr8 143828268 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 SHARPIN chr8 143836150 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 MAF1 chr8 143835643 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 KIAA1875 chr8 143836299 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8077-01 HGH1 chr8 143834318 144182542 G T 1 1 1 INS 1 Missense_Mutation 85 7 0 TCGA-BR-8078-01 A1BG chr19 58348851 58353716 G T 1 1 1 DEL 1 Missense_Mutation 3 1 0 TCGA-BR-8289-01 GRINA chr8 143938248 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 SPATC1 chr8 143937738 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 OPLAH chr8 143937586 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 EXOSC4 chr8 143945068 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 GPAA1 chr8 143939322 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 CYC1 chr8 143944975 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 SHARPIN chr8 143936153 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 MAF1 chr8 143936794 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 KIAA1875 chr8 143938584 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 HGH1 chr8 143940536 144182542 G T 1 1 1 INS 1 Missense_Mutation 62 3 0 TCGA-BR-8289-01 TMEM121 chr14 105252174 105533894 G T 1 1 1 INS 1 Missense_Mutation 85 3 0 TCGA-BR-8289-01 NEUROD2 chr17 39517375 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 PPP1R1B chr17 39524282 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 STARD3 chr17 39518268 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 TCAP chr17 39520350 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 PNMT chr17 39517848 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 PGAP3 chr17 39524557 39720645 G T 1 1 1 INS 1 Missense_Mutation 124 9 0 TCGA-BR-8289-01 MIEN1 chr17 39726396 39908152 G T 1 1 1 INS 1 Missense_Mutation 80 6 0 TCGA-BR-8289-01 GRB7 chr17 39721933 39908152 G T 1 1 1 INS 1 Missense_Mutation 80 6 0 TCGA-BR-8289-01 C19orf12 chr19 29694961 29709820 G T NA 0.01 1 INS 0 Nonsense_Mutation 11 14 1 TCGA-BR-8289-01 CCNE1 chr19 29711258 29894638 G T 0.04 0.03281 0.97065 INS 0 Nonsense_Mutation 152 11 1 TCGA-BR-8289-01 URI1 chr19 29906070 30209754 G T 1 1 1 INS 1 Missense_Mutation 201 7 0 TCGA-BR-8289-01 RBL1 chr20 36994254 37103095 G T 1 1 1 INS 1 Missense_Mutation 157 5 0 TCGA-BR-8295-01 AC108925.1 chr8 127293499 127693004 G T 1 1 1 INS 1 Missense_Mutation 318 5 0 TCGA-BR-8295-01 MYC chr8 127715445 127769489 G T 1 1 1 INS 1 Missense_Mutation 30 7 0 TCGA-BR-8295-01 NEUROD2 chr17 39513475 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 PPP1R1B chr17 39510584 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 STARD3 chr17 39514505 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 TCAP chr17 39518899 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 PNMT chr17 39512003 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 PGAP3 chr17 39512317 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 ERBB2 chr17 39518626 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 MIEN1 chr17 39513528 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8295-01 GRB7 chr17 39516468 39926578 G T 1 1 1 INS 1 Missense_Mutation 214 6 0 TCGA-BR-8296-01 TMEM121 chr14 105422917 105533894 G T 1 1 1 INS 1 Missense_Mutation 25 4 0 TCGA-BR-8370-01 A1BG chr19 58317737 58370362 G T 1 1 1 INS 1 Missense_Mutation 31 5 0 TCGA-BR-8370-01 ZNF497 chr19 58316510 58370362 G T 1 1 1 INS 1 Missense_Mutation 31 5 0 TCGA-BR-8373-01 KRT16 chr17 41607539 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 EIF1 chr17 41607489 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 GAST chr17 41605009 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 HAP1 chr17 41609829 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 JUP chr17 41601755 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 P3H4 chr17 41605341 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 FKBP10 chr17 41607144 41869877 G T 1 1 1 INS 1 Missense_Mutation 120 7 0 TCGA-BR-8373-01 A1BG chr19 57891321 58370362 G T 1 1 1 INS 1 Missense_Mutation 274 3 0 TCGA-BR-8373-01 ZNF497 chr19 57891096 58370362 G T 1 1 1 INS 1 Missense_Mutation 274 3 0 TCGA-BR-8483-01 PGAP3 chr17 39676575 39734812 G T NA 0.01 1 INS 0 Nonsense_Mutation 76 14 1 TCGA-BR-8483-01 ERBB2 chr17 39672758 39734812 G T NA 0.01 1 INS 0 Nonsense_Mutation 76 14 1 TCGA-BR-8483-01 MIEN1 chr17 39675320 39734812 G T NA 0.01 1 INS 0 Nonsense_Mutation 76 14 1 TCGA-BR-8483-01 HAP1 chr17 41722915 41747774 G T 1 1 1 INS 1 Missense_Mutation 19 7 0 TCGA-BR-8483-01 JUP chr17 41753709 41770940 G T NA 0.01 1 INS 0 Nonsense_Mutation 9 14 1 TCGA-BR-8483-01 FKBP10 chr17 41811531 41834000 G T NA 0.01 1 INS 0 Nonsense_Mutation 14 14 1 TCGA-BR-8483-01 RBL1 chr20 37043818 37133091 G T 1 1 1 INS 1 Missense_Mutation 111 11 0 TCGA-BR-8484-01 RBL1 chr20 36916090 37265479 G T 1 1 1 INS 1 Missense_Mutation 275 7 0 TCGA-BR-8485-01 AC108925.1 chr8 127476438 127630986 G T 1 1 1 INS 1 Missense_Mutation 127 6 0 TCGA-BR-8485-01 MYC chr8 127713975 127780550 G T 1 1 1 INS 1 Missense_Mutation 37 4 0 TCGA-BR-8485-01 GRINA chr8 143742501 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 SPATC1 chr8 143734887 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 OPLAH chr8 143737713 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 EXOSC4 chr8 143738968 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 GPAA1 chr8 143736362 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 CYC1 chr8 143742192 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 SHARPIN chr8 143744263 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 MAF1 chr8 143738841 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 KIAA1875 chr8 143736054 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 HGH1 chr8 143738946 144182542 G T 1 1 1 INS 1 Missense_Mutation 99 5 0 TCGA-BR-8485-01 RNH1 chr11 462825 709861 G T 1 1 1 INS 1 Missense_Mutation 55 3 0 TCGA-BR-8485-01 HRAS chr11 463693 709861 G T 1 1 1 INS 1 Missense_Mutation 55 3 0 TCGA-BR-8485-01 LRRC56 chr11 465098 709861 G T 1 1 1 INS 1 Missense_Mutation 55 3 0 TCGA-BR-8485-01 LMNTD2 chr11 456634 709861 G T 1 1 1 INS 1 Missense_Mutation 55 3 0 TCGA-BR-8485-01 RASSF7 chr11 456954 709861 G T 1 1 1 INS 1 Missense_Mutation 55 3 0 TCGA-BR-8590-01 NEUROD2 chr17 39459165 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 PPP1R1B chr17 39460609 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 STARD3 chr17 39454340 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 TCAP chr17 39456710 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 PNMT chr17 39459806 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 PGAP3 chr17 39462995 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 ERBB2 chr17 39460416 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 MIEN1 chr17 39458075 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 GRB7 chr17 39454008 39766006 G T 1 1 1 INS 1 Missense_Mutation 168 5 0 TCGA-BR-8590-01 C19orf12 chr19 29650072 29765571 G T 1 1 1 INS 1 Missense_Mutation 71 4 0 TCGA-BR-8677-01 TMEM121 chr14 105078420 105533894 G T 1 1 1 INS 1 Missense_Mutation 129 3 0 TCGA-BR-8678-01 GOLGA6L2 chr15 23442813 23501017 G T 1 1 1 INS 1 Missense_Mutation 36 4 0 TCGA-BR-8678-01 C19orf12 chr19 29658188 30002166 G T 1 1 1 INS 1 Missense_Mutation 245 6 0 TCGA-BR-8678-01 CCNE1 chr19 29660301 30002166 G T 1 1 1 INS 1 Missense_Mutation 245 6 0 TCGA-BR-8683-01 FARP2 chr2 241176574 241537572 G T 1 1 1 INS 1 Missense_Mutation 205 8 0 TCGA-BR-8683-01 STK25 chr2 241170390 241537572 G T 1 1 1 INS 1 Missense_Mutation 205 8 0 TCGA-BR-8683-01 RBL1 chr20 36905094 37092246 G T 1 1 1 INS 1 Missense_Mutation 181 9 0 TCGA-BR-8690-01 FARP2 chr2 241415088 241537572 G T 1 1 1 INS 1 Missense_Mutation 83 4 0 TCGA-BR-8690-01 STK25 chr2 241417221 241537572 G T 1 1 1 INS 1 Missense_Mutation 83 4 0 TCGA-BR-8690-01 AC108925.1 chr8 127544771 127644406 G T 1 1 1 INS 1 Missense_Mutation 86 9 0 TCGA-BR-8690-01 PNMT chr17 39670208 39734812 G T 1 1 1 INS 1 Missense_Mutation 78 6 0 TCGA-BR-8690-01 PGAP3 chr17 39667942 39734812 G T 1 1 1 INS 1 Missense_Mutation 78 6 0 TCGA-BR-8690-01 ERBB2 chr17 39672955 39734812 G T 1 1 1 INS 1 Missense_Mutation 78 6 0 TCGA-BR-8690-01 MIEN1 chr17 39664990 39734812 G T 1 1 1 INS 1 Missense_Mutation 78 6 0 TCGA-BR-8690-01 KRT14 chr17 41483981 41710084 G T 1 1 1 INS 1 Missense_Mutation 89 5 0 TCGA-BR-8690-01 KRT16 chr17 41485462 41710084 G T 1 1 1 INS 1 Missense_Mutation 89 5 0 TCGA-BR-8690-01 EIF1 chr17 41489312 41710084 G T 1 1 1 INS 1 Missense_Mutation 89 5 0 TCGA-BR-8690-01 HAP1 chr17 41717341 42153740 G T 1 1 1 INS 1 Missense_Mutation 216 4 0 TCGA-BR-8690-01 JUP chr17 41719494 42153740 G T 1 1 1 INS 1 Missense_Mutation 216 4 0 TCGA-BR-8690-01 P3H4 chr17 41722860 42153740 G T 1 1 1 INS 1 Missense_Mutation 216 4 0 TCGA-BR-8690-01 FKBP10 chr17 41720248 42153740 G T 1 1 1 INS 1 Missense_Mutation 216 4 0 TCGA-BR-A452-01 AC108925.1 chr8 127568414 127643526 G T 0.32 0.03429 0.96922 INS 0 Nonsense_Mutation 66 8 1 TCGA-BR-A452-01 MYC chr8 127646455 127854222 G T 1 1 1 INS 1 Missense_Mutation 154 6 0 TCGA-BR-A452-01 GRINA chr8 143918493 143993705 G T 1 1 1 INS 1 Missense_Mutation 10 5 0 TCGA-BR-A452-01 SPATC1 chr8 144002529 144067190 G T 0.73 0.04011 0.97602 INS 1 Missense_Mutation 15 8 0 TCGA-BR-A452-01 OPLAH chr8 144001995 144067190 G T 0.73 0.04011 0.97602 INS 1 Missense_Mutation 15 8 0 TCGA-BR-A452-01 EXOSC4 chr8 144081425 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 GPAA1 chr8 144077122 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 CYC1 chr8 144080778 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 SHARPIN chr8 144081180 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 MAF1 chr8 144081222 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 KIAA1875 chr8 144075596 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 HGH1 chr8 144078492 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A452-01 RNH1 chr11 465393 657676 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-BR-A452-01 HRAS chr11 459018 657676 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-BR-A452-01 LRRC56 chr11 459098 657676 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-BR-A452-01 LMNTD2 chr11 459747 657676 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-BR-A452-01 RASSF7 chr11 463675 657676 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-BR-A452-01 TMEM121 chr14 105460266 105533894 G T 1 1 1 INS 1 Missense_Mutation 17 4 0 TCGA-BR-A452-01 KRT14 chr17 41397341 41653194 G T 1 1 1 INS 1 Missense_Mutation 170 5 0 TCGA-BR-A452-01 KRT16 chr17 41394993 41653194 G T 1 1 1 INS 1 Missense_Mutation 170 5 0 TCGA-BR-A452-01 RBL1 chr20 36914637 37112086 G T 1 1 1 INS 1 Missense_Mutation 193 5 0 TCGA-BR-A4CQ-01 TMEM121 chr14 105493313 105533894 G T 1 1 1 INS 1 Missense_Mutation 14 3 0 TCGA-BR-A4CR-01 AC108925.1 chr8 127355257 127645286 G T NA 0.01 1 INS 0 Nonsense_Mutation 235 14 1 TCGA-BR-A4CS-01 KRT14 chr17 41541990 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 KRT16 chr17 41542885 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 EIF1 chr17 41541074 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 GAST chr17 41549362 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 HAP1 chr17 41545617 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 JUP chr17 41548077 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 P3H4 chr17 41541286 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4CS-01 FKBP10 chr17 41548310 41962637 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-BR-A4J1-01 LYRM5 chr12 25198353 25239275 G T NA 0.01 1 INS 0 Nonsense_Mutation 98 14 1 TCGA-BR-A4J1-01 KRAS chr12 25196436 25239275 G T NA 0.01 1 INS 0 Nonsense_Mutation 98 14 1 TCGA-BR-A4J1-01 URI1 chr19 29827722 30292822 G T 1 1 1 INS 1 Missense_Mutation 297 3 0 TCGA-BR-A4J2-01 LYRM5 chr12 25123342 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 150 14 1 TCGA-BR-A4J2-01 GOLGA6L2 chr15 23447018 23875752 G T 1 1 1 DEL 1 Missense_Mutation 308 1 0 TCGA-BR-A4J4-01 NEUROD2 chr17 39562399 39666058 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A4J4-01 PPP1R1B chr17 39558056 39666058 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A4J4-01 STARD3 chr17 39556796 39666058 G T 1 1 1 INS 1 Missense_Mutation 38 5 0 TCGA-BR-A4J4-01 PGAP3 chr17 39670635 39773917 G T NA 0.01 1 INS 0 Nonsense_Mutation 91 14 1 TCGA-BR-A4J4-01 ERBB2 chr17 39675948 39773917 G T NA 0.01 1 INS 0 Nonsense_Mutation 91 14 1 TCGA-BR-A4J4-01 MIEN1 chr17 39675142 39773917 G T NA 0.01 1 INS 0 Nonsense_Mutation 91 14 1 TCGA-BR-A4J4-01 GRB7 chr17 39669940 39773917 G T NA 0.01 1 INS 0 Nonsense_Mutation 91 14 1 TCGA-BR-A4PE-01 TCAP chr17 39660400 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 PNMT chr17 39661977 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 PGAP3 chr17 39663309 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 ERBB2 chr17 39664034 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 MIEN1 chr17 39660023 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 GRB7 chr17 39662431 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 93 14 1 TCGA-BR-A4PE-01 KRT14 chr17 41501212 41632460 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-BR-A4PE-01 KRT16 chr17 41503642 41632460 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-BR-A4PE-01 EIF1 chr17 41641963 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PE-01 GAST chr17 41633463 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PE-01 HAP1 chr17 41641194 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PE-01 JUP chr17 41639572 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PE-01 P3H4 chr17 41638656 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PE-01 FKBP10 chr17 41640167 41858154 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-BR-A4PF-01 LYRM5 chr12 25195873 25217605 G T NA 0.01 1 INS 0 Nonsense_Mutation 34 14 1 TCGA-BR-A4PF-01 KRAS chr12 25229371 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-CD-5799-01 NEUROD2 chr17 39522772 39610186 G T 0.32 0.03417 0.96201 INS 0 Nonsense_Mutation 47 13 1 TCGA-CD-5799-01 PPP1R1B chr17 39627220 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 STARD3 chr17 39629182 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 TCAP chr17 39632657 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 PNMT chr17 39630184 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 PGAP3 chr17 39631143 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 ERBB2 chr17 39632892 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 MIEN1 chr17 39628758 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5799-01 GRB7 chr17 39628146 39814112 G T 0.37 0.03568 0.96345 INS 0 Nonsense_Mutation 125 13 1 TCGA-CD-5800-01 TMEM121 chr14 105197804 105533894 G T 1 1 1 INS 1 Missense_Mutation 95 4 0 TCGA-CD-5800-01 NEUROD2 chr17 39555340 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 PPP1R1B chr17 39561137 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 STARD3 chr17 39562673 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 TCAP chr17 39562931 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 PNMT chr17 39558081 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 PGAP3 chr17 39560561 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 ERBB2 chr17 39559206 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 MIEN1 chr17 39558511 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5800-01 GRB7 chr17 39561855 39764715 G T 0.43 0.04079 0.95607 INS 0 Nonsense_Mutation 122 13 1 TCGA-CD-5802-01 AC108925.1 chr8 127535654 127759804 G T 1 1 1 INS 1 Missense_Mutation 193 8 0 TCGA-CD-5802-01 MYC chr8 127542557 127759804 G T 1 1 1 INS 1 Missense_Mutation 193 8 0 TCGA-CD-5802-01 KRAS chr12 25226071 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 78 14 1 TCGA-CD-5802-01 ERBB2 chr17 39674092 39726690 G T 1 1 1 INS 1 Missense_Mutation 72 5 0 TCGA-CD-5804-01 TMEM121 chr14 105105721 105533894 G T 1 1 1 INS 1 Missense_Mutation 120 5 0 TCGA-CD-5804-01 NEUROD2 chr17 39546029 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 PPP1R1B chr17 39545161 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 STARD3 chr17 39546145 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 TCAP chr17 39549459 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 PNMT chr17 39550141 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 PGAP3 chr17 39553140 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 ERBB2 chr17 39551171 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 MIEN1 chr17 39551709 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-5804-01 GRB7 chr17 39549697 39799549 G T NA 0.01 1 INS 0 Nonsense_Mutation 148 14 1 TCGA-CD-8524-01 LYRM5 chr12 25196560 25209618 G T NA 0.01 1 INS 0 Nonsense_Mutation 18 14 1 TCGA-CD-8524-01 KRAS chr12 25224837 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 78 14 1 TCGA-CD-8524-01 A1BG chr19 58284779 58370362 G T 1 1 1 INS 1 Missense_Mutation 51 4 0 TCGA-CD-8524-01 ZNF497 chr19 58288348 58370362 G T 1 1 1 INS 1 Missense_Mutation 51 4 0 TCGA-CD-8525-01 RBL1 chr20 37019077 37071833 G T 1 1 1 INS 1 Missense_Mutation 49 4 0 TCGA-CD-8527-01 RNH1 chr11 461442 564127 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CD-8527-01 HRAS chr11 460626 564127 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CD-8527-01 LRRC56 chr11 457437 564127 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CD-8527-01 LMNTD2 chr11 458219 564127 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CD-8527-01 RASSF7 chr11 460152 564127 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CD-8527-01 LYRM5 chr12 25175613 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 123 14 1 TCGA-CD-8527-01 KRAS chr12 25174962 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 123 14 1 TCGA-CD-8527-01 TMEM121 chr14 105043523 105533894 G T 1 1 1 INS 1 Missense_Mutation 141 3 0 TCGA-CD-8527-01 RBL1 chr20 36988679 37093604 G T 1 1 1 INS 1 Missense_Mutation 150 4 0 TCGA-CD-8535-01 AC108925.1 chr8 127549878 127644406 G T 0.56 0.10971 0.94153 INS 1 Missense_Mutation 80 6 0 TCGA-CD-8535-01 MYC chr8 127654562 128071475 G T 1 1 1 INS 1 Missense_Mutation 309 4 0 TCGA-CD-8535-01 GRINA chr8 143890659 144045204 G T 1 1 1 INS 1 Missense_Mutation 30 4 0 TCGA-CD-8535-01 EXOSC4 chr8 144064336 144097954 G T 1 1 1 INS 1 Missense_Mutation 19 3 0 TCGA-CD-8535-01 GPAA1 chr8 144064535 144097954 G T 1 1 1 INS 1 Missense_Mutation 19 3 0 TCGA-CD-8535-01 CYC1 chr8 144062225 144097954 G T 1 1 1 INS 1 Missense_Mutation 19 3 0 TCGA-CD-8535-01 MAF1 chr8 144105603 144182542 G T 1 1 1 INS 1 Missense_Mutation 21 4 0 TCGA-CD-8535-01 KIAA1875 chr8 144107810 144182542 G T 1 1 1 INS 1 Missense_Mutation 21 4 0 TCGA-CD-8535-01 HGH1 chr8 144104802 144182542 G T 1 1 1 INS 1 Missense_Mutation 21 4 0 TCGA-CD-8535-01 C19orf12 chr19 29694454 29967578 G T 0.46 0.07637 0.88256 INS 0 Nonsense_Mutation 212 9 1 TCGA-CD-8535-01 CCNE1 chr19 29692808 29967578 G T 0.46 0.07637 0.88256 INS 0 Nonsense_Mutation 212 9 1 TCGA-CD-8535-01 URI1 chr19 29971759 30039623 G T 0.52 0.08077 0.93395 INS 0 Nonsense_Mutation 45 13 1 TCGA-CD-8535-01 RBL1 chr20 36976076 37093604 G T 1 1 1 INS 1 Missense_Mutation 156 5 0 TCGA-CD-A486-01 CYC1 chr8 144097099 144182542 G T 1 1 1 INS 1 Missense_Mutation 25 6 0 TCGA-CD-A486-01 SHARPIN chr8 144101737 144182542 G T 1 1 1 INS 1 Missense_Mutation 25 6 0 TCGA-CD-A486-01 MAF1 chr8 144100449 144182542 G T 1 1 1 INS 1 Missense_Mutation 25 6 0 TCGA-CD-A486-01 KIAA1875 chr8 144100891 144182542 G T 1 1 1 INS 1 Missense_Mutation 25 6 0 TCGA-CD-A486-01 HGH1 chr8 144099932 144182542 G T 1 1 1 INS 1 Missense_Mutation 25 6 0 TCGA-CD-A486-01 TMEM121 chr14 105168735 105533894 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-CD-A486-01 CCNE1 chr19 29819225 30037196 G T NA 0.01 1 INS 0 Nonsense_Mutation 170 14 1 TCGA-CD-A486-01 URI1 chr19 29819186 30037196 G T NA 0.01 1 INS 0 Nonsense_Mutation 170 14 1 TCGA-CD-A487-01 CCNE1 chr19 29804750 29885886 G T NA 0.01 1 INS 0 Nonsense_Mutation 84 14 1 TCGA-CD-A489-01 FARP2 chr2 241311797 241537572 G T 1 1 1 INS 1 Missense_Mutation 132 3 0 TCGA-CD-A489-01 STK25 chr2 241306863 241537572 G T 1 1 1 INS 1 Missense_Mutation 132 3 0 TCGA-CD-A48A-01 LYRM5 chr12 25193759 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-CD-A48A-01 KRAS chr12 25199913 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-CD-A48A-01 RBL1 chr20 36818002 37170697 G T 1 1 1 INS 1 Missense_Mutation 254 9 0 TCGA-CD-A48C-01 LYRM5 chr12 25198459 25239275 G T NA 0.01 1 INS 0 Nonsense_Mutation 98 14 1 TCGA-CD-A48C-01 KRAS chr12 25192024 25239275 G T NA 0.01 1 INS 0 Nonsense_Mutation 98 14 1 TCGA-CD-A48C-01 RBL1 chr20 37042098 37094427 G T 1 1 1 INS 1 Missense_Mutation 96 3 0 TCGA-CG-4300-01 SPATC1 chr8 144014077 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 OPLAH chr8 144017388 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 EXOSC4 chr8 144015550 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 GPAA1 chr8 144016007 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 CYC1 chr8 144016182 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 SHARPIN chr8 144017864 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 MAF1 chr8 144012974 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 KIAA1875 chr8 144008760 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 HGH1 chr8 144014860 144182542 G T 1 1 1 INS 1 Missense_Mutation 50 5 0 TCGA-CG-4300-01 P3H4 chr17 41801492 41868030 G T NA 0.01 1 INS 0 Nonsense_Mutation 34 14 1 TCGA-CG-4300-01 FKBP10 chr17 41796386 41868030 G T NA 0.01 1 INS 0 Nonsense_Mutation 34 14 1 TCGA-CG-4300-01 RBL1 chr20 36689813 37170697 G T 1 1 1 INS 1 Missense_Mutation 299 8 0 TCGA-CG-4301-01 NEUROD2 chr17 39583289 39674647 G T NA 0.01 1 INS 0 Nonsense_Mutation 31 14 1 TCGA-CG-4301-01 PPP1R1B chr17 39581693 39674647 G T NA 0.01 1 INS 0 Nonsense_Mutation 31 14 1 TCGA-CG-4301-01 STARD3 chr17 39587512 39674647 G T NA 0.01 1 INS 0 Nonsense_Mutation 31 14 1 TCGA-CG-4301-01 TCAP chr17 39588637 39674647 G T NA 0.01 1 INS 0 Nonsense_Mutation 31 14 1 TCGA-CG-4301-01 PNMT chr17 39589431 39674647 G T NA 0.01 1 INS 0 Nonsense_Mutation 31 14 1 TCGA-CG-4301-01 ERBB2 chr17 39678072 39913748 G T NA 0.01 1 INS 0 Nonsense_Mutation 141 14 1 TCGA-CG-4301-01 MIEN1 chr17 39687007 39913748 G T NA 0.01 1 INS 0 Nonsense_Mutation 141 14 1 TCGA-CG-4301-01 GRB7 chr17 39682978 39913748 G T NA 0.01 1 INS 0 Nonsense_Mutation 141 14 1 TCGA-CG-4301-01 RBL1 chr20 36897922 37223397 G T 1 1 1 INS 1 Missense_Mutation 257 3 0 TCGA-CG-4304-01 A1BG chr19 58248775 58370362 G T 0.32 0.08927 0.54295 INS 1 Missense_Mutation 67 3 0 TCGA-CG-4304-01 ZNF497 chr19 58252311 58370362 G T 0.32 0.08927 0.54295 INS 1 Missense_Mutation 67 3 0 TCGA-CG-4436-01 TMEM121 chr14 105523307 105533894 G T 1 1 1 INS 1 Missense_Mutation 2 7 0 TCGA-CG-4436-01 A1BG chr19 58346950 58370362 G T 1 1 1 INS 1 Missense_Mutation 15 4 0 TCGA-CG-4436-01 ZNF497 chr19 58348034 58370362 G T 1 1 1 INS 1 Missense_Mutation 15 4 0 TCGA-CG-4438-01 RBL1 chr20 36973855 37094427 G T 1 1 1 INS 1 Missense_Mutation 161 11 0 TCGA-CG-4440-01 AC108925.1 chr8 127621249 127728722 G T NA 0.01 1 INS 0 Nonsense_Mutation 112 14 1 TCGA-CG-4440-01 TMEM121 chr14 105502239 105533894 G T 1 1 1 INS 1 Missense_Mutation 10 4 0 TCGA-CG-4441-01 RNH1 chr11 459480 620599 G T 1 1 1 INS 1 Missense_Mutation 32 6 0 TCGA-CG-4441-01 HRAS chr11 459811 620599 G T 1 1 1 INS 1 Missense_Mutation 32 6 0 TCGA-CG-4441-01 LRRC56 chr11 460389 620599 G T 1 1 1 INS 1 Missense_Mutation 32 6 0 TCGA-CG-4441-01 LMNTD2 chr11 459571 620599 G T 1 1 1 INS 1 Missense_Mutation 32 6 0 TCGA-CG-4441-01 RASSF7 chr11 456733 620599 G T 1 1 1 INS 1 Missense_Mutation 32 6 0 TCGA-CG-4441-01 RBL1 chr20 36979922 37077669 G T 1 1 1 INS 1 Missense_Mutation 109 7 0 TCGA-CG-4443-01 RBL1 chr20 36930328 37083946 G T 0.51 0.14597 0.86873 INS 1 Missense_Mutation 142 6 0 TCGA-CG-4444-01 PGAP3 chr17 39689983 39705135 G T 1 1 1 INS 1 Missense_Mutation 12 11 0 TCGA-CG-4444-01 MIEN1 chr17 39708899 39792621 G T 1 1 1 INS 1 Missense_Mutation 73 9 0 TCGA-CG-4444-01 GRB7 chr17 39710025 39792621 G T 1 1 1 INS 1 Missense_Mutation 73 9 0 TCGA-CG-4444-01 URI1 chr19 29835230 30059606 G T 1 1 1 INS 1 Missense_Mutation 145 13 0 TCGA-CG-4449-01 GRINA chr8 143917586 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 SPATC1 chr8 143920096 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 OPLAH chr8 143914249 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 EXOSC4 chr8 143918695 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 GPAA1 chr8 143914788 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 CYC1 chr8 143920320 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 SHARPIN chr8 143920411 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 MAF1 chr8 143919397 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 KIAA1875 chr8 143919889 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 HGH1 chr8 143911793 144182542 G T 1 1 1 INS 1 Missense_Mutation 64 4 0 TCGA-CG-4449-01 TMEM121 chr14 105524583 105533894 G T 1 1 1 INS 1 Missense_Mutation 2 4 0 TCGA-CG-4449-01 NEUROD2 chr17 39534132 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 PPP1R1B chr17 39535901 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 STARD3 chr17 39526570 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 TCAP chr17 39526996 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 PNMT chr17 39534452 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 PGAP3 chr17 39533288 39720635 G T 0.51 0.05532 0.95617 INS 1 Missense_Mutation 120 9 0 TCGA-CG-4449-01 MIEN1 chr17 39727555 39905427 G T 1 1 1 INS 1 Missense_Mutation 75 8 0 TCGA-CG-4449-01 GRB7 chr17 39730197 39905427 G T 1 1 1 INS 1 Missense_Mutation 75 8 0 TCGA-CG-4449-01 KRT14 chr17 41417756 41767318 G T 1 1 1 INS 1 Missense_Mutation 206 5 0 TCGA-CG-4449-01 KRT16 chr17 41420978 41767318 G T 1 1 1 INS 1 Missense_Mutation 206 5 0 TCGA-CG-4449-01 EIF1 chr17 41418829 41767318 G T 1 1 1 INS 1 Missense_Mutation 206 5 0 TCGA-CG-4449-01 GAST chr17 41424240 41767318 G T 1 1 1 INS 1 Missense_Mutation 206 5 0 TCGA-CG-4449-01 HAP1 chr17 41422403 41767318 G T 1 1 1 INS 1 Missense_Mutation 206 5 0 TCGA-CG-4466-01 TCAP chr17 39640946 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 PNMT chr17 39647376 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 PGAP3 chr17 39642611 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 ERBB2 chr17 39639976 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 MIEN1 chr17 39647423 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 GRB7 chr17 39643169 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 122 14 1 TCGA-CG-4466-01 KRT14 chr17 41342281 41700905 G T 1 1 1 INS 1 Missense_Mutation 217 3 0 TCGA-CG-4466-01 KRT16 chr17 41340814 41700905 G T 1 1 1 INS 1 Missense_Mutation 217 3 0 TCGA-CG-4466-01 EIF1 chr17 41336238 41700905 G T 1 1 1 INS 1 Missense_Mutation 217 3 0 TCGA-CG-4466-01 GAST chr17 41701781 41812449 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-CG-4466-01 HAP1 chr17 41702231 41812449 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-CG-4466-01 JUP chr17 41701467 41812449 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-CG-4475-01 GRINA chr8 143877607 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 SPATC1 chr8 143882885 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 OPLAH chr8 143873068 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 EXOSC4 chr8 143878209 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 GPAA1 chr8 143879157 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 CYC1 chr8 143877027 144100798 G T 1 1 1 INS 1 Missense_Mutation 52 5 0 TCGA-CG-4475-01 HGH1 chr8 144127533 144182542 G T 1 1 1 INS 1 Missense_Mutation 19 4 0 TCGA-CG-4475-01 RNH1 chr11 463793 883230 G T 1 1 1 INS 1 Missense_Mutation 92 4 0 TCGA-CG-4475-01 HRAS chr11 459714 883230 G T 1 1 1 INS 1 Missense_Mutation 92 4 0 TCGA-CG-4475-01 LRRC56 chr11 463899 883230 G T 1 1 1 INS 1 Missense_Mutation 92 4 0 TCGA-CG-4475-01 LMNTD2 chr11 460653 883230 G T 1 1 1 INS 1 Missense_Mutation 92 4 0 TCGA-CG-4475-01 RASSF7 chr11 459831 883230 G T 1 1 1 INS 1 Missense_Mutation 92 4 0 TCGA-CG-5716-01 NEUROD2 chr17 39575836 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 PPP1R1B chr17 39572381 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 STARD3 chr17 39575667 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 TCAP chr17 39572806 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 PNMT chr17 39571231 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 PGAP3 chr17 39572352 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 ERBB2 chr17 39570757 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 MIEN1 chr17 39573021 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5716-01 GRB7 chr17 39569898 39747958 G T 1 1 1 INS 1 Missense_Mutation 107 4 0 TCGA-CG-5717-01 GOLGA6L2 chr15 23439199 23482183 G T 1 1 1 INS 1 Missense_Mutation 21 3 0 TCGA-CG-5724-01 EIF1 chr17 41635597 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 GAST chr17 41642181 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 HAP1 chr17 41633639 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 JUP chr17 41641024 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 P3H4 chr17 41642331 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 FKBP10 chr17 41642494 42079096 G T 1 1 1 INS 1 Missense_Mutation 210 8 0 TCGA-CG-5724-01 RBL1 chr20 37016697 37171650 G T 1 1 1 INS 1 Missense_Mutation 175 5 0 TCGA-CG-5726-01 RBL1 chr20 36974183 37133091 G T 0.7 0.53616 0.84596 INS 0 Nonsense_Mutation 171 3 1 TCGA-CG-5730-01 NEUROD2 chr17 39587283 39681288 G T 0.19 0.02511 0.75515 INS 1 Missense_Mutation 36 9 0 TCGA-CG-5730-01 PPP1R1B chr17 39583933 39681288 G T 0.19 0.02511 0.75515 INS 1 Missense_Mutation 36 9 0 TCGA-CG-5730-01 STARD3 chr17 39585320 39681288 G T 0.19 0.02511 0.75515 INS 1 Missense_Mutation 36 9 0 TCGA-CG-5730-01 TCAP chr17 39584278 39681288 G T 0.19 0.02511 0.75515 INS 1 Missense_Mutation 36 9 0 TCGA-CG-5730-01 PNMT chr17 39582516 39681288 G T 0.19 0.02511 0.75515 INS 1 Missense_Mutation 36 9 0 TCGA-CG-5730-01 ERBB2 chr17 39689228 39747958 G T NA 0.01 1 INS 0 Nonsense_Mutation 68 14 1 TCGA-CG-5730-01 MIEN1 chr17 39689222 39747958 G T NA 0.01 1 INS 0 Nonsense_Mutation 68 14 1 TCGA-CG-5730-01 GRB7 chr17 39687862 39747958 G T NA 0.01 1 INS 0 Nonsense_Mutation 68 14 1 TCGA-CG-5730-01 KRT14 chr17 41578542 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 KRT16 chr17 41586711 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 EIF1 chr17 41577101 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 GAST chr17 41584055 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 HAP1 chr17 41584806 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 JUP chr17 41583714 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 P3H4 chr17 41581580 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-CG-5730-01 FKBP10 chr17 41577233 41993593 G T NA 0.01 1 INS 0 Nonsense_Mutation 188 14 1 TCGA-D7-5578-01 GRINA chr8 143971275 144067190 G T 0.95 0.10477 0.98467 INS 1 Missense_Mutation 20 6 0 TCGA-D7-5578-01 SPATC1 chr8 143971483 144067190 G T 0.95 0.10477 0.98467 INS 1 Missense_Mutation 20 6 0 TCGA-D7-5578-01 OPLAH chr8 143973284 144067190 G T 0.95 0.10477 0.98467 INS 1 Missense_Mutation 20 6 0 TCGA-D7-5578-01 EXOSC4 chr8 144078681 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 GPAA1 chr8 144073879 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 CYC1 chr8 144080081 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 SHARPIN chr8 144074076 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 MAF1 chr8 144081072 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 KIAA1875 chr8 144074917 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5578-01 HGH1 chr8 144079198 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 4 0 TCGA-D7-5579-01 C19orf12 chr19 29660703 29942076 G T NA 0.01 1 INS 0 Nonsense_Mutation 210 14 1 TCGA-D7-5579-01 CCNE1 chr19 29656220 29942076 G T NA 0.01 1 INS 0 Nonsense_Mutation 210 14 1 TCGA-D7-5579-01 A1BG chr19 58353312 58370362 G T 1 1 1 INS 1 Missense_Mutation 12 7 0 TCGA-D7-5579-01 ZNF497 chr19 58347709 58370362 G T 1 1 1 INS 1 Missense_Mutation 12 7 0 TCGA-D7-6518-01 RNH1 chr11 459727 692445 G T 1 1 1 INS 1 Missense_Mutation 53 4 0 TCGA-D7-6518-01 HRAS chr11 459136 692445 G T 1 1 1 INS 1 Missense_Mutation 53 4 0 TCGA-D7-6518-01 LRRC56 chr11 462181 692445 G T 1 1 1 INS 1 Missense_Mutation 53 4 0 TCGA-D7-6518-01 LMNTD2 chr11 457928 692445 G T 1 1 1 INS 1 Missense_Mutation 53 4 0 TCGA-D7-6518-01 RASSF7 chr11 459479 692445 G T 1 1 1 INS 1 Missense_Mutation 53 4 0 TCGA-D7-6520-01 FARP2 chr2 241058743 241537572 G T 1 1 1 INS 1 Missense_Mutation 272 4 0 TCGA-D7-6520-01 STK25 chr2 241063240 241537572 G T 1 1 1 INS 1 Missense_Mutation 272 4 0 TCGA-D7-6525-01 SPATC1 chr8 144016853 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 OPLAH chr8 144013001 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 EXOSC4 chr8 144015911 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 GPAA1 chr8 144014423 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 CYC1 chr8 144008437 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 SHARPIN chr8 144014069 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 MAF1 chr8 144008728 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 KIAA1875 chr8 144015673 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6525-01 HGH1 chr8 144017920 144182542 G T 0.73 0.09828 0.97798 INS 1 Missense_Mutation 50 8 0 TCGA-D7-6526-01 FARP2 chr2 241413585 241537572 G T 1 1 1 INS 1 Missense_Mutation 86 4 0 TCGA-D7-6526-01 STK25 chr2 241413797 241537572 G T 1 1 1 INS 1 Missense_Mutation 86 4 0 TCGA-D7-6526-01 A1BG chr19 57954093 58370362 G T 1 1 1 INS 1 Missense_Mutation 248 5 0 TCGA-D7-6526-01 ZNF497 chr19 57959686 58370362 G T 1 1 1 INS 1 Missense_Mutation 248 5 0 TCGA-D7-6526-01 RBL1 chr20 36716776 37144677 G T 1 1 1 INS 1 Missense_Mutation 277 6 0 TCGA-D7-6527-01 CCNE1 chr19 29706717 30014492 G T 0.72 0.03627 0.97546 INS 1 Missense_Mutation 242 14 0 TCGA-D7-6528-01 FARP2 chr2 241247564 241537572 G T 1 1 1 INS 1 Missense_Mutation 164 3 0 TCGA-D7-6528-01 STK25 chr2 241238234 241537572 G T 1 1 1 INS 1 Missense_Mutation 164 3 0 TCGA-D7-6528-01 TMEM121 chr14 105127811 105533894 G T 1 1 1 INS 1 Missense_Mutation 115 4 0 TCGA-D7-6528-01 C19orf12 chr19 29497281 29912533 G T NA 0.01 1 INS 0 Nonsense_Mutation 305 14 1 TCGA-D7-6528-01 CCNE1 chr19 29498292 29912533 G T NA 0.01 1 INS 0 Nonsense_Mutation 305 14 1 TCGA-D7-6528-01 URI1 chr19 29924303 30040028 G T NA 0.01 1 INS 0 Nonsense_Mutation 75 14 1 TCGA-D7-6815-01 GOLGA6L2 chr15 23440375 23500837 G T 1 1 1 INS 1 Missense_Mutation 37 4 0 TCGA-D7-6815-01 EIF1 chr17 41677000 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6815-01 GAST chr17 41677877 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6815-01 HAP1 chr17 41676491 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6815-01 JUP chr17 41676253 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6815-01 P3H4 chr17 41685825 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6815-01 FKBP10 chr17 41686000 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-D7-6818-01 C19orf12 chr19 29642940 29809086 G T NA 0.01 1 INS 0 Nonsense_Mutation 105 14 1 TCGA-D7-6818-01 CCNE1 chr19 29811995 29930499 G T NA 0.01 1 INS 0 Nonsense_Mutation 111 14 1 TCGA-D7-6818-01 URI1 chr19 29947394 30020645 G T NA 0.01 1 INS 0 Nonsense_Mutation 57 14 1 TCGA-D7-6822-01 MIEN1 chr17 39690037 39796188 G T 0.55 0.24129 0.84767 INS 0 Nonsense_Mutation 90 4 1 TCGA-D7-6822-01 GRB7 chr17 39690740 39796188 G T 0.55 0.24129 0.84767 INS 0 Nonsense_Mutation 90 4 1 TCGA-D7-8570-01 A1BG chr19 58028729 58370362 G T 1 1 1 INS 1 Missense_Mutation 204 5 0 TCGA-D7-8570-01 ZNF497 chr19 58032869 58370362 G T 1 1 1 INS 1 Missense_Mutation 204 5 0 TCGA-D7-8573-01 NEUROD2 chr17 39530653 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 PPP1R1B chr17 39538744 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 STARD3 chr17 39536575 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 TCAP chr17 39538887 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 PNMT chr17 39532559 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 PGAP3 chr17 39532792 39719656 G T NA 0.01 1 INS 0 Nonsense_Mutation 108 14 1 TCGA-D7-8573-01 MIEN1 chr17 39730295 39913748 G T NA 0.01 1 INS 0 Nonsense_Mutation 89 14 1 TCGA-D7-8573-01 GRB7 chr17 39727083 39913748 G T NA 0.01 1 INS 0 Nonsense_Mutation 89 14 1 TCGA-D7-8576-01 RNH1 chr11 456110 929550 G T 1 1 1 INS 1 Missense_Mutation 110 3 0 TCGA-D7-8576-01 HRAS chr11 458237 929550 G T 1 1 1 INS 1 Missense_Mutation 110 3 0 TCGA-D7-8576-01 LRRC56 chr11 463570 929550 G T 1 1 1 INS 1 Missense_Mutation 110 3 0 TCGA-D7-8576-01 LMNTD2 chr11 465572 929550 G T 1 1 1 INS 1 Missense_Mutation 110 3 0 TCGA-D7-8576-01 RASSF7 chr11 460066 929550 G T 1 1 1 INS 1 Missense_Mutation 110 3 0 TCGA-D7-A4YT-01 GRINA chr8 143787486 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 SPATC1 chr8 143789013 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 OPLAH chr8 143782145 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 EXOSC4 chr8 143781314 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 GPAA1 chr8 143784166 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 CYC1 chr8 143784153 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 SHARPIN chr8 143782293 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 MAF1 chr8 143790492 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 KIAA1875 chr8 143788129 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YT-01 HGH1 chr8 143788307 144182542 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-D7-A4YX-01 PNMT chr17 39671127 39714286 G T NA 0.01 1 INS 0 Nonsense_Mutation 54 14 1 TCGA-D7-A4YX-01 PGAP3 chr17 39665701 39714286 G T NA 0.01 1 INS 0 Nonsense_Mutation 54 14 1 TCGA-D7-A4YX-01 ERBB2 chr17 39670518 39714286 G T NA 0.01 1 INS 0 Nonsense_Mutation 54 14 1 TCGA-D7-A4YX-01 MIEN1 chr17 39720718 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 55 14 1 TCGA-D7-A4YX-01 GRB7 chr17 39721218 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 55 14 1 TCGA-D7-A6EV-01 STARD3 chr17 39638224 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 TCAP chr17 39642856 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 PNMT chr17 39639666 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 PGAP3 chr17 39636237 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 ERBB2 chr17 39642268 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 MIEN1 chr17 39637189 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 GRB7 chr17 39635012 39813730 G T 1 1 1 INS 1 Missense_Mutation 122 9 0 TCGA-D7-A6EV-01 KRT14 chr17 41396803 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 KRT16 chr17 41396195 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 EIF1 chr17 41398537 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 GAST chr17 41395445 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 HAP1 chr17 41397205 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 JUP chr17 41393312 41812449 G T 1 1 1 INS 1 Missense_Mutation 238 3 0 TCGA-D7-A6EV-01 RBL1 chr20 36897605 37133091 G T 1 1 1 INS 1 Missense_Mutation 208 3 0 TCGA-D7-A6EX-01 LYRM5 chr12 25094447 25249127 G T NA 0.01 1 INS 0 Nonsense_Mutation 174 14 1 TCGA-D7-A6EY-01 GRINA chr8 143605796 144074887 G T 1 1 1 INS 1 Missense_Mutation 86 4 0 TCGA-D7-A6EY-01 SPATC1 chr8 143601905 144074887 G T 1 1 1 INS 1 Missense_Mutation 86 4 0 TCGA-D7-A6EY-01 OPLAH chr8 143607121 144074887 G T 1 1 1 INS 1 Missense_Mutation 86 4 0 TCGA-D7-A6EY-01 EXOSC4 chr8 144083351 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 GPAA1 chr8 144083142 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 CYC1 chr8 144077371 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 SHARPIN chr8 144085650 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 MAF1 chr8 144077208 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 KIAA1875 chr8 144082583 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6EY-01 HGH1 chr8 144077394 144182542 G T 1 1 1 INS 1 Missense_Mutation 36 5 0 TCGA-D7-A6F0-01 FARP2 chr2 241044308 241537572 G T 1 1 1 INS 1 Missense_Mutation 283 6 0 TCGA-D7-A6F0-01 STK25 chr2 241039657 241537572 G T 1 1 1 INS 1 Missense_Mutation 283 6 0 TCGA-D7-A6F0-01 RNH1 chr11 464427 589246 G T 1 1 1 INS 1 Missense_Mutation 28 10 0 TCGA-D7-A6F0-01 HRAS chr11 460938 589246 G T 1 1 1 INS 1 Missense_Mutation 28 10 0 TCGA-D7-A6F0-01 LRRC56 chr11 461617 589246 G T 1 1 1 INS 1 Missense_Mutation 28 10 0 TCGA-D7-A6F0-01 LMNTD2 chr11 456671 589246 G T 1 1 1 INS 1 Missense_Mutation 28 10 0 TCGA-D7-A6F0-01 RASSF7 chr11 465909 589246 G T 1 1 1 INS 1 Missense_Mutation 28 10 0 TCGA-D7-A6F0-01 URI1 chr19 29960131 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 57 14 1 TCGA-D7-A6F0-01 A1BG chr19 58301231 58370362 G T 1 1 1 INS 1 Missense_Mutation 37 6 0 TCGA-D7-A6F0-01 ZNF497 chr19 58305888 58370362 G T 1 1 1 INS 1 Missense_Mutation 37 6 0 TCGA-D7-A6F2-01 A1BG chr19 58346180 58370362 G T 1 1 1 INS 1 Missense_Mutation 12 3 0 TCGA-D7-A6F2-01 ZNF497 chr19 58352374 58370362 G T 1 1 1 INS 1 Missense_Mutation 12 3 0 TCGA-D7-A74A-01 RBL1 chr20 36696809 37174432 G T 0.6 0.45837 0.74147 INS 0 Nonsense_Mutation 306 4 1 TCGA-D7-A74B-01 C19orf12 chr19 29696080 29753071 G T 0.87 0.12083 0.98365 INS 1 Missense_Mutation 48 6 0 TCGA-D7-A74B-01 CCNE1 chr19 29762624 29882681 G T 0.47 0.04801 0.94889 INS 0 Nonsense_Mutation 111 7 1 TCGA-D7-A74B-01 URI1 chr19 29892461 30122788 G T 0.79 0.13194 0.98134 INS 1 Missense_Mutation 151 6 0 TCGA-EQ-8122-01 NEUROD2 chr17 39568278 39671617 G T 1 1 1 INS 1 Missense_Mutation 38 7 0 TCGA-EQ-8122-01 PPP1R1B chr17 39568383 39671617 G T 1 1 1 INS 1 Missense_Mutation 38 7 0 TCGA-EQ-8122-01 STARD3 chr17 39560589 39671617 G T 1 1 1 INS 1 Missense_Mutation 38 7 0 TCGA-EQ-8122-01 TCAP chr17 39563965 39671617 G T 1 1 1 INS 1 Missense_Mutation 38 7 0 TCGA-EQ-8122-01 PNMT chr17 39561530 39671617 G T 1 1 1 INS 1 Missense_Mutation 38 7 0 TCGA-EQ-8122-01 PGAP3 chr17 39679918 39699581 G T 1 1 1 INS 1 Missense_Mutation 19 6 0 TCGA-EQ-8122-01 ERBB2 chr17 39708013 39749917 G T NA 0.01 1 INS 0 Nonsense_Mutation 59 14 1 TCGA-EQ-8122-01 MIEN1 chr17 39705830 39749917 G T NA 0.01 1 INS 0 Nonsense_Mutation 59 14 1 TCGA-EQ-8122-01 GRB7 chr17 39714065 39749917 G T NA 0.01 1 INS 0 Nonsense_Mutation 59 14 1 TCGA-EQ-8122-01 KRT14 chr17 41550317 41729239 G T 1 1 1 INS 1 Missense_Mutation 86 7 0 TCGA-EQ-8122-01 KRT16 chr17 41542969 41729239 G T 1 1 1 INS 1 Missense_Mutation 86 7 0 TCGA-EQ-8122-01 EIF1 chr17 41547505 41729239 G T 1 1 1 INS 1 Missense_Mutation 86 7 0 TCGA-EQ-8122-01 GAST chr17 41545124 41729239 G T 1 1 1 INS 1 Missense_Mutation 86 7 0 TCGA-EQ-8122-01 JUP chr17 41753491 41978547 G T 1 1 1 INS 1 Missense_Mutation 113 7 0 TCGA-EQ-8122-01 P3H4 chr17 41747724 41978547 G T 1 1 1 INS 1 Missense_Mutation 113 7 0 TCGA-EQ-8122-01 FKBP10 chr17 41751205 41978547 G T 1 1 1 INS 1 Missense_Mutation 113 7 0 TCGA-EQ-A4SO-01 EXOSC4 chr8 144077289 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 GPAA1 chr8 144077132 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 CYC1 chr8 144075999 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 SHARPIN chr8 144073795 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 MAF1 chr8 144081117 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 KIAA1875 chr8 144074875 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-EQ-A4SO-01 HGH1 chr8 144078831 144182542 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-F1-6875-01 FARP2 chr2 241128951 241537572 G T 1 1 1 INS 1 Missense_Mutation 237 7 0 TCGA-F1-6875-01 STK25 chr2 241124609 241537572 G T 1 1 1 INS 1 Missense_Mutation 237 7 0 TCGA-F1-6875-01 GOLGA6L2 chr15 23445745 23517695 G T 1 1 1 INS 1 Missense_Mutation 63 5 0 TCGA-F1-A448-01 FARP2 chr2 241386331 241537572 G T 1 1 1 INS 1 Missense_Mutation 94 9 0 TCGA-F1-A448-01 STK25 chr2 241388212 241537572 G T 1 1 1 INS 1 Missense_Mutation 94 9 0 TCGA-FP-7735-01 PPP1R1B chr17 39631967 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 STARD3 chr17 39623279 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 TCAP chr17 39632887 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 PNMT chr17 39626431 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 PGAP3 chr17 39627838 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 ERBB2 chr17 39627585 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 MIEN1 chr17 39624269 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7735-01 GRB7 chr17 39625745 39999677 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-FP-7829-01 FARP2 chr2 241296468 241537572 G T 1 1 1 INS 1 Missense_Mutation 143 4 0 TCGA-FP-7829-01 STK25 chr2 241293072 241537572 G T 1 1 1 INS 1 Missense_Mutation 143 4 0 TCGA-FP-8099-01 RBL1 chr20 36877741 37171650 G T 1 1 1 INS 1 Missense_Mutation 228 6 0 TCGA-FP-8631-01 NEUROD2 chr17 39609283 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 PPP1R1B chr17 39610940 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 STARD3 chr17 39607827 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 TCAP chr17 39613203 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 PNMT chr17 39608494 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 PGAP3 chr17 39606827 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 ERBB2 chr17 39610531 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 MIEN1 chr17 39606301 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-8631-01 GRB7 chr17 39605506 39796188 G T NA 0.01 1 INS 0 Nonsense_Mutation 118 14 1 TCGA-FP-A8CX-01 TCAP chr17 39665373 39743435 G T NA 0.01 1 INS 0 Nonsense_Mutation 81 14 1 TCGA-FP-A8CX-01 PNMT chr17 39664913 39743435 G T NA 0.01 1 INS 0 Nonsense_Mutation 81 14 1 TCGA-FP-A8CX-01 PGAP3 chr17 39660545 39743435 G T NA 0.01 1 INS 0 Nonsense_Mutation 81 14 1 TCGA-FP-A8CX-01 ERBB2 chr17 39662815 39743435 G T NA 0.01 1 INS 0 Nonsense_Mutation 81 14 1 TCGA-FP-A8CX-01 MIEN1 chr17 39664511 39743435 G T NA 0.01 1 INS 0 Nonsense_Mutation 81 14 1 TCGA-FP-A9TM-01 FARP2 chr2 241128142 241537572 G T 1 1 1 INS 1 Missense_Mutation 239 5 0 TCGA-FP-A9TM-01 STK25 chr2 241121238 241537572 G T 1 1 1 INS 1 Missense_Mutation 239 5 0 TCGA-HF-7131-01 RNH1 chr11 457353 892810 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-HF-7131-01 HRAS chr11 463754 892810 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-HF-7131-01 LRRC56 chr11 456781 892810 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-HF-7131-01 LMNTD2 chr11 464974 892810 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-HF-7131-01 RASSF7 chr11 456370 892810 G T 1 1 1 INS 1 Missense_Mutation 97 5 0 TCGA-HF-7131-01 RBL1 chr20 36903275 37094427 G T 1 1 1 INS 1 Missense_Mutation 189 7 0 TCGA-HF-7134-01 GOLGA6L2 chr15 23440793 23653032 G T 1 1 1 INS 1 Missense_Mutation 155 4 0 TCGA-HF-7136-01 GRB7 chr17 39738881 39875096 G T 1 1 1 INS 1 Missense_Mutation 54 5 0 TCGA-HF-7136-01 A1BG chr19 58310370 58370362 G T 1 1 1 INS 1 Missense_Mutation 34 4 0 TCGA-HF-7136-01 ZNF497 chr19 58310281 58370362 G T 1 1 1 INS 1 Missense_Mutation 34 4 0 TCGA-HU-8243-01 TCAP chr17 39651692 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 PNMT chr17 39644299 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 PGAP3 chr17 39648624 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 ERBB2 chr17 39647414 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 MIEN1 chr17 39643760 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 GRB7 chr17 39645482 39805567 G T 0.68 0.13547 0.97189 INS 0 Nonsense_Mutation 116 11 1 TCGA-HU-8243-01 RBL1 chr20 36855305 37191041 G T 1 1 1 INS 1 Missense_Mutation 256 7 0 TCGA-HU-8245-01 AC108925.1 chr8 127551007 127999895 G T 0.99 0.44709 1 INS 1 Missense_Mutation 309 8 0 TCGA-HU-8245-01 MYC chr8 127551799 127999895 G T 0.99 0.44709 1 INS 1 Missense_Mutation 309 8 0 TCGA-HU-8249-01 RBL1 chr20 36969682 37093952 G T 1 1 1 INS 1 Missense_Mutation 160 5 0 TCGA-HU-A4G3-01 FARP2 chr2 241423800 241537572 G T 1 1 1 INS 1 Missense_Mutation 80 4 0 TCGA-HU-A4G3-01 STK25 chr2 241422764 241537572 G T 1 1 1 INS 1 Missense_Mutation 80 4 0 TCGA-HU-A4G3-01 RNH1 chr11 460693 648694 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-HU-A4G3-01 HRAS chr11 462466 648694 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-HU-A4G3-01 LRRC56 chr11 463702 648694 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-HU-A4G3-01 LMNTD2 chr11 458073 648694 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-HU-A4G3-01 RASSF7 chr11 457339 648694 G T 1 1 1 INS 1 Missense_Mutation 38 3 0 TCGA-HU-A4G6-01 NEUROD2 chr17 39561075 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 PPP1R1B chr17 39560708 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 STARD3 chr17 39564227 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 TCAP chr17 39561561 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 PNMT chr17 39563484 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 PGAP3 chr17 39561344 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 ERBB2 chr17 39568911 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 MIEN1 chr17 39561835 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G6-01 GRB7 chr17 39562649 39899104 G T NA 0.01 1 INS 0 Nonsense_Mutation 172 14 1 TCGA-HU-A4G9-01 GRINA chr8 143842241 144067190 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-HU-A4G9-01 SPATC1 chr8 143846885 144067190 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-HU-A4G9-01 OPLAH chr8 143845600 144067190 G T 1 1 1 INS 1 Missense_Mutation 43 4 0 TCGA-HU-A4G9-01 EXOSC4 chr8 144073144 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 GPAA1 chr8 144075010 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 CYC1 chr8 144074445 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 SHARPIN chr8 144074460 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 MAF1 chr8 144075210 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 KIAA1875 chr8 144077541 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4G9-01 HGH1 chr8 144076862 144182542 G T 1 1 1 INS 1 Missense_Mutation 37 3 0 TCGA-HU-A4GF-01 KRT14 chr17 41582987 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 KRT16 chr17 41579651 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 EIF1 chr17 41583726 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 GAST chr17 41579719 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 HAP1 chr17 41581437 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 JUP chr17 41579442 41806678 G T NA 0.01 1 INS 0 Nonsense_Mutation 96 14 1 TCGA-HU-A4GF-01 CCNE1 chr19 29802459 30265211 G T 0.65 0.36801 0.90599 INS 0 Nonsense_Mutation 317 13 1 TCGA-HU-A4GF-01 URI1 chr19 29804095 30265211 G T 0.65 0.36801 0.90599 INS 0 Nonsense_Mutation 317 13 1 TCGA-HU-A4GH-01 GRINA chr8 143805208 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 SPATC1 chr8 143810213 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 OPLAH chr8 143808638 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 EXOSC4 chr8 143805419 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 GPAA1 chr8 143800860 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 CYC1 chr8 143801115 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 SHARPIN chr8 143809683 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 MAF1 chr8 143804614 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 KIAA1875 chr8 143802766 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 HGH1 chr8 143804794 144182542 G T 1 1 1 INS 1 Missense_Mutation 88 7 0 TCGA-HU-A4GH-01 NEUROD2 chr17 39553318 39692350 G T 1 1 1 INS 1 Missense_Mutation 60 14 0 TCGA-HU-A4GH-01 PPP1R1B chr17 39551604 39692350 G T 1 1 1 INS 1 Missense_Mutation 60 14 0 TCGA-HU-A4GH-01 STARD3 chr17 39548304 39692350 G T 1 1 1 INS 1 Missense_Mutation 60 14 0 TCGA-HU-A4GH-01 TCAP chr17 39553560 39692350 G T 1 1 1 INS 1 Missense_Mutation 60 14 0 TCGA-HU-A4GH-01 PNMT chr17 39548911 39692350 G T 1 1 1 INS 1 Missense_Mutation 60 14 0 TCGA-HU-A4GH-01 MIEN1 chr17 39700099 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-HU-A4GH-01 GRB7 chr17 39697880 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 97 14 1 TCGA-HU-A4GH-01 CCNE1 chr19 29813514 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 173 14 1 TCGA-HU-A4GH-01 URI1 chr19 29812437 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 173 14 1 TCGA-HU-A4GP-01 GOLGA6L2 chr15 23440811 23536160 G T 1 1 1 INS 1 Missense_Mutation 75 4 0 TCGA-HU-A4GQ-01 GOLGA6L2 chr15 23447379 23905999 G T 1 1 1 INS 1 Missense_Mutation 348 3 0 TCGA-HU-A4GT-01 URI1 chr19 29835019 30065959 G T 1 1 1 INS 1 Missense_Mutation 146 3 0 TCGA-HU-A4H0-01 URI1 chr19 29959716 30015932 G T 1 1 1 INS 1 Missense_Mutation 46 6 0 TCGA-HU-A4H2-01 TMEM121 chr14 105282870 105533894 G T 1 1 1 INS 1 Missense_Mutation 73 4 0 TCGA-HU-A4H2-01 A1BG chr19 58238753 58370362 G T 1 1 1 INS 1 Missense_Mutation 77 6 0 TCGA-HU-A4H2-01 ZNF497 chr19 58234640 58370362 G T 1 1 1 INS 1 Missense_Mutation 77 6 0 TCGA-HU-A4HB-01 LYRM5 chr12 25047750 25217605 G T 0.81 0.54011 0.98042 INS 0 Nonsense_Mutation 158 13 1 TCGA-HU-A4HD-01 RNH1 chr11 466008 688804 G T 1 1 1 INS 1 Missense_Mutation 49 5 0 TCGA-HU-A4HD-01 HRAS chr11 461082 688804 G T 1 1 1 INS 1 Missense_Mutation 49 5 0 TCGA-HU-A4HD-01 LRRC56 chr11 463439 688804 G T 1 1 1 INS 1 Missense_Mutation 49 5 0 TCGA-HU-A4HD-01 LMNTD2 chr11 463954 688804 G T 1 1 1 INS 1 Missense_Mutation 49 5 0 TCGA-HU-A4HD-01 RASSF7 chr11 458298 688804 G T 1 1 1 INS 1 Missense_Mutation 49 5 0 TCGA-HU-A4HD-01 GOLGA6L2 chr15 23438488 23806894 G T 1 1 1 INS 1 Missense_Mutation 268 4 0 TCGA-HU-A4HD-01 NEUROD2 chr17 39572422 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 PPP1R1B chr17 39563517 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 STARD3 chr17 39565010 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 TCAP chr17 39571674 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 PNMT chr17 39568029 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 PGAP3 chr17 39571150 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 51 14 1 TCGA-HU-A4HD-01 MIEN1 chr17 39703787 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 90 14 1 TCGA-HU-A4HD-01 GRB7 chr17 39706973 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 90 14 1 TCGA-HU-A4HD-01 C19orf12 chr19 29629812 29864672 G T NA 0.01 1 INS 1 Missense_Mutation 174 14 0 TCGA-HU-A4HD-01 CCNE1 chr19 29633676 29864672 G T NA 0.01 1 INS 1 Missense_Mutation 174 14 0 TCGA-HU-A4HD-01 URI1 chr19 29928286 30404079 G T 1 1 1 INS 1 Missense_Mutation 321 7 0 TCGA-IN-7806-01 FARP2 chr2 241097678 241537572 G T 1 1 1 INS 1 Missense_Mutation 260 3 0 TCGA-IN-7806-01 STK25 chr2 241098035 241537572 G T 1 1 1 INS 1 Missense_Mutation 260 3 0 TCGA-IN-7808-01 A1BG chr19 58338237 58370362 G T 1 1 1 INS 1 Missense_Mutation 19 5 0 TCGA-IN-7808-01 ZNF497 chr19 58341779 58370362 G T 1 1 1 INS 1 Missense_Mutation 19 5 0 TCGA-IN-8663-01 LYRM5 chr12 25191908 25238935 G T NA 0.01 1 INS 0 Nonsense_Mutation 95 14 1 TCGA-IN-8663-01 KRAS chr12 25196760 25238935 G T NA 0.01 1 INS 0 Nonsense_Mutation 95 14 1 TCGA-IN-A6RI-01 AC108925.1 chr8 127596898 127789775 G T 1 1 1 INS 1 Missense_Mutation 155 5 0 TCGA-IN-A6RI-01 MYC chr8 127601277 127789775 G T 1 1 1 INS 1 Missense_Mutation 155 5 0 TCGA-IN-A6RI-01 C19orf12 chr19 29474386 29809086 G T NA 0.01 1 INS 0 Nonsense_Mutation 235 14 1 TCGA-IN-A6RI-01 URI1 chr19 29828848 30037623 G T NA 0.01 1 INS 0 Nonsense_Mutation 140 14 1 TCGA-IN-A6RJ-01 LYRM5 chr12 25133329 25557360 G T 0.81 0.08106 0.98065 INS 0 Nonsense_Mutation 387 13 1 TCGA-IN-A6RJ-01 KRAS chr12 25136264 25557360 G T 0.81 0.08106 0.98065 INS 0 Nonsense_Mutation 387 13 1 TCGA-IN-A6RL-01 AC108925.1 chr8 127443504 127810463 G T NA 0.01 1 INS 1 Missense_Mutation 286 14 0 TCGA-IN-A6RL-01 MYC chr8 127443395 127810463 G T NA 0.01 1 INS 1 Missense_Mutation 286 14 0 TCGA-IN-A6RL-01 GOLGA6L2 chr15 23439549 23443797 G T 1 1 1 INS 1 Missense_Mutation 3 11 0 TCGA-IN-A6RL-01 A1BG chr19 58269432 58370362 G T 1 1 1 INS 1 Missense_Mutation 57 11 0 TCGA-IN-A6RL-01 ZNF497 chr19 58272590 58370362 G T 1 1 1 INS 1 Missense_Mutation 57 11 0 TCGA-IN-A6RN-01 AC108925.1 chr8 127565575 127854222 G T 1 1 1 INS 1 Missense_Mutation 225 6 0 TCGA-IN-A6RN-01 MYC chr8 127563500 127854222 G T 1 1 1 INS 1 Missense_Mutation 225 6 0 TCGA-IN-A6RN-01 NEUROD2 chr17 39472557 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 PPP1R1B chr17 39466750 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 STARD3 chr17 39469310 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 TCAP chr17 39464276 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 PNMT chr17 39466479 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 PGAP3 chr17 39464157 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 ERBB2 chr17 39469582 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 MIEN1 chr17 39467309 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RN-01 GRB7 chr17 39465590 39773306 G T 1 1 1 INS 1 Missense_Mutation 170 4 0 TCGA-IN-A6RR-01 A1BG chr19 58202573 58370362 G T 1 1 1 INS 1 Missense_Mutation 97 7 0 TCGA-IN-A6RR-01 ZNF497 chr19 58208776 58370362 G T 1 1 1 INS 1 Missense_Mutation 97 7 0 TCGA-IN-A6RS-01 NEUROD2 chr17 39468670 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 PPP1R1B chr17 39468108 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 STARD3 chr17 39472567 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 TCAP chr17 39476615 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 PNMT chr17 39470302 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 PGAP3 chr17 39470107 39720645 G T 0.66 0.41217 0.89846 INS 0 Nonsense_Mutation 141 12 1 TCGA-IN-A6RS-01 MIEN1 chr17 39726051 40020205 G T 0.04 0.01464 0.31459 INS 1 Missense_Mutation 124 11 0 TCGA-IN-A6RS-01 GRB7 chr17 39732147 40020205 G T 0.04 0.01464 0.31459 INS 1 Missense_Mutation 124 11 0 TCGA-IN-A7NR-01 LYRM5 chr12 25191110 25217605 G T NA 0.01 1 INS 0 Nonsense_Mutation 38 14 1 TCGA-IN-A7NR-01 KRAS chr12 25223440 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 78 14 1 TCGA-IN-A7NT-01 GOLGA6L2 chr15 23442765 23495371 G T 1 1 1 INS 1 Missense_Mutation 34 4 0 TCGA-IN-A7NU-01 LYRM5 chr12 25199101 25217240 G T NA 0.01 1 INS 0 Nonsense_Mutation 26 14 1 TCGA-IN-A7NU-01 KRAS chr12 25223329 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 85 14 1 TCGA-IN-AB1V-01 NEUROD2 chr17 39531066 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 PPP1R1B chr17 39534279 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 STARD3 chr17 39531481 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 TCAP chr17 39534283 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 PNMT chr17 39529303 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 PGAP3 chr17 39527400 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 ERBB2 chr17 39535013 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 MIEN1 chr17 39528247 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IN-AB1V-01 GRB7 chr17 39530702 39792621 G T 1 1 1 INS 1 Missense_Mutation 157 3 0 TCGA-IP-7968-01 LYRM5 chr12 25197462 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-IP-7968-01 KRAS chr12 25196024 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 116 14 1 TCGA-IP-7968-01 RBL1 chr20 36910363 37147626 G T 1 1 1 INS 1 Missense_Mutation 207 6 0 TCGA-KB-A93H-01 FARP2 chr2 241271114 241449048 G T 1 1 1 INS 1 Missense_Mutation 85 6 0 TCGA-KB-A93H-01 STK25 chr2 241454996 241537572 G T 1 1 1 INS 1 Missense_Mutation 64 9 0 TCGA-KB-A93H-01 AC108925.1 chr8 127346854 127811850 G T 1 1 1 INS 1 Missense_Mutation 361 10 0 TCGA-KB-A93H-01 MYC chr8 127342604 127811850 G T 1 1 1 INS 1 Missense_Mutation 361 10 0 TCGA-KB-A93H-01 GOLGA6L2 chr15 23442070 23506143 G T 1 1 1 INS 1 Missense_Mutation 50 11 0 TCGA-KB-A93H-01 A1BG chr19 58127845 58370362 G T NA 0.01 1 INS 0 Nonsense_Mutation 143 14 1 TCGA-KB-A93H-01 ZNF497 chr19 58135002 58370362 G T NA 0.01 1 INS 0 Nonsense_Mutation 143 14 1 TCGA-MX-A663-01 RNH1 chr11 464154 589246 G T 1 1 1 INS 1 Missense_Mutation 27 6 0 TCGA-MX-A663-01 HRAS chr11 462710 589246 G T 1 1 1 INS 1 Missense_Mutation 27 6 0 TCGA-MX-A663-01 LRRC56 chr11 461499 589246 G T 1 1 1 INS 1 Missense_Mutation 27 6 0 TCGA-MX-A663-01 LMNTD2 chr11 461192 589246 G T 1 1 1 INS 1 Missense_Mutation 27 6 0 TCGA-MX-A663-01 RASSF7 chr11 457962 589246 G T 1 1 1 INS 1 Missense_Mutation 27 6 0 TCGA-MX-A666-01 RNH1 chr11 463291 946985 G T 1 1 1 INS 1 Missense_Mutation 120 4 0 TCGA-MX-A666-01 HRAS chr11 462827 946985 G T 1 1 1 INS 1 Missense_Mutation 120 4 0 TCGA-MX-A666-01 LRRC56 chr11 460377 946985 G T 1 1 1 INS 1 Missense_Mutation 120 4 0 TCGA-MX-A666-01 LMNTD2 chr11 460774 946985 G T 1 1 1 INS 1 Missense_Mutation 120 4 0 TCGA-MX-A666-01 RASSF7 chr11 465465 946985 G T 1 1 1 INS 1 Missense_Mutation 120 4 0 TCGA-MX-A666-01 C19orf12 chr19 29511042 29886545 G T 0.77 0.03815 0.97598 INS 0 Nonsense_Mutation 278 14 1 TCGA-MX-A666-01 CCNE1 chr19 29510343 29886545 G T 0.77 0.03815 0.97598 INS 0 Nonsense_Mutation 278 14 1 TCGA-R5-A7O7-01 CCNE1 chr19 29769323 29969636 G T 1 1 1 INS 1 Missense_Mutation 156 5 0 TCGA-R5-A7O7-01 URI1 chr19 29976131 30037196 G T 0.46 0.0357 0.97342 INS 0 Nonsense_Mutation 40 10 1 TCGA-R5-A7ZE-01 GRINA chr8 143910440 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 SPATC1 chr8 143910703 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 OPLAH chr8 143908741 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 EXOSC4 chr8 143906846 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 GPAA1 chr8 143906036 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 CYC1 chr8 143909882 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 SHARPIN chr8 143909210 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 MAF1 chr8 143909257 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 KIAA1875 chr8 143913477 144123090 G T 1 1 1 INS 1 Missense_Mutation 55 8 0 TCGA-R5-A7ZE-01 HGH1 chr8 144125400 144182542 G T 1 1 1 INS 1 Missense_Mutation 11 7 0 TCGA-R5-A7ZE-01 RNH1 chr11 491003 573554 G T 1 1 1 INS 1 Missense_Mutation 12 5 0 TCGA-R5-A7ZE-01 HRAS chr11 485498 573554 G T 1 1 1 INS 1 Missense_Mutation 12 5 0 TCGA-R5-A7ZE-01 LRRC56 chr11 486114 573554 G T 1 1 1 INS 1 Missense_Mutation 12 5 0 TCGA-R5-A7ZE-01 LMNTD2 chr11 490660 573554 G T 1 1 1 INS 1 Missense_Mutation 12 5 0 TCGA-R5-A7ZE-01 RASSF7 chr11 487791 573554 G T 1 1 1 INS 1 Missense_Mutation 12 5 0 TCGA-R5-A7ZE-01 TCAP chr17 39642978 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 PNMT chr17 39647120 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 PGAP3 chr17 39647003 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 ERBB2 chr17 39641296 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 MIEN1 chr17 39640371 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 GRB7 chr17 39643718 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 120 14 1 TCGA-R5-A7ZE-01 KRT14 chr17 41481736 41588525 G T NA 0.01 1 INS 0 Nonsense_Mutation 57 14 1 TCGA-R5-A7ZE-01 KRT16 chr17 41594170 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 EIF1 chr17 41594891 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 GAST chr17 41600438 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 HAP1 chr17 41595429 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 JUP chr17 41593790 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 P3H4 chr17 41597651 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 FKBP10 chr17 41594785 41913489 G T NA 0.01 1 INS 0 Nonsense_Mutation 145 14 1 TCGA-R5-A7ZE-01 C19orf12 chr19 29598229 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 313 14 1 TCGA-R5-A7ZE-01 CCNE1 chr19 29600461 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 313 14 1 TCGA-R5-A7ZE-01 URI1 chr19 29599512 30039623 G T NA 0.01 1 INS 0 Nonsense_Mutation 313 14 1 TCGA-R5-A7ZR-01 A1BG chr19 58250844 58370362 G T 1 1 1 INS 1 Missense_Mutation 66 5 0 TCGA-R5-A7ZR-01 ZNF497 chr19 58256303 58370362 G T 1 1 1 INS 1 Missense_Mutation 66 5 0 TCGA-R5-A805-01 RNH1 chr11 468408 630331 G T 1 1 1 INS 1 Missense_Mutation 32 3 0 TCGA-R5-A805-01 HRAS chr11 467738 630331 G T 1 1 1 INS 1 Missense_Mutation 32 3 0 TCGA-R5-A805-01 LRRC56 chr11 470322 630331 G T 1 1 1 INS 1 Missense_Mutation 32 3 0 TCGA-R5-A805-01 LMNTD2 chr11 463251 630331 G T 1 1 1 INS 1 Missense_Mutation 32 3 0 TCGA-R5-A805-01 RASSF7 chr11 467934 630331 G T 1 1 1 INS 1 Missense_Mutation 32 3 0 TCGA-RD-A7BS-01 LYRM5 chr12 25090610 25409129 G T 0.8 0.06631 0.97952 INS 1 Missense_Mutation 309 7 0 TCGA-RD-A7BS-01 KRAS chr12 25097367 25409129 G T 0.8 0.06631 0.97952 INS 1 Missense_Mutation 309 7 0 TCGA-RD-A7BT-01 AC108925.1 chr8 127449409 127678384 G T NA 0.01 1 INS 0 Nonsense_Mutation 198 14 1 TCGA-RD-A7BT-01 MYC chr8 127682487 127788055 G T NA 0.01 1 INS 0 Nonsense_Mutation 79 14 1 TCGA-RD-A7BT-01 PPP1R1B chr17 39613627 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 STARD3 chr17 39616195 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 TCAP chr17 39611051 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 PNMT chr17 39612971 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 PGAP3 chr17 39616558 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 ERBB2 chr17 39613447 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 MIEN1 chr17 39615040 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 GRB7 chr17 39610933 39767120 G T NA 0.01 1 INS 0 Nonsense_Mutation 104 14 1 TCGA-RD-A7BT-01 KRT14 chr17 41494113 41617162 G T 1 1 1 INS 1 Missense_Mutation 55 4 0 TCGA-RD-A7BT-01 KRT16 chr17 41488646 41617162 G T 1 1 1 INS 1 Missense_Mutation 55 4 0 TCGA-RD-A7BT-01 EIF1 chr17 41629964 41701419 G T 1 1 1 INS 1 Missense_Mutation 29 8 0 TCGA-RD-A7BT-01 GAST chr17 41715873 41793264 G T NA 0.01 1 INS 0 Nonsense_Mutation 42 14 1 TCGA-RD-A7BT-01 HAP1 chr17 41711727 41793264 G T NA 0.01 1 INS 0 Nonsense_Mutation 42 14 1 TCGA-RD-A7BT-01 JUP chr17 41713932 41793264 G T NA 0.01 1 INS 0 Nonsense_Mutation 42 14 1 TCGA-RD-A7BT-01 P3H4 chr17 41799051 41824996 G T NA 0.01 1 INS 0 Nonsense_Mutation 15 14 1 TCGA-RD-A7BT-01 FKBP10 chr17 41802515 41824996 G T NA 0.01 1 INS 0 Nonsense_Mutation 15 14 1 TCGA-RD-A7BW-01 C19orf12 chr19 29432949 29793744 G T 1 1 1 INS 1 Missense_Mutation 259 4 0 TCGA-RD-A7BW-01 CCNE1 chr19 29806316 29986468 G T 0.02 0.02916 0.95631 INS 1 Missense_Mutation 153 7 0 TCGA-RD-A7BW-01 A1BG chr19 57924273 58370362 G T 1 1 1 INS 1 Missense_Mutation 265 3 0 TCGA-RD-A7BW-01 ZNF497 chr19 57924389 58370362 G T 1 1 1 INS 1 Missense_Mutation 265 3 0 TCGA-RD-A7C1-01 GOLGA6L2 chr15 23444258 23894390 G T 1 1 1 INS 1 Missense_Mutation 335 4 0 TCGA-RD-A7C1-01 A1BG chr19 58247705 58370362 G T 1 1 1 INS 1 Missense_Mutation 71 5 0 TCGA-RD-A7C1-01 ZNF497 chr19 58242660 58370362 G T 1 1 1 INS 1 Missense_Mutation 71 5 0 TCGA-VQ-A8DL-01 GRINA chr8 143861596 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 SPATC1 chr8 143862342 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 OPLAH chr8 143859295 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 EXOSC4 chr8 143860057 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 GPAA1 chr8 143859916 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 CYC1 chr8 143865574 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 SHARPIN chr8 143862524 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 MAF1 chr8 143856760 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 KIAA1875 chr8 143863981 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 HGH1 chr8 143858377 144182542 G T 0.44 0.21757 0.65745 INS 0 Nonsense_Mutation 73 4 1 TCGA-VQ-A8DL-01 KRAS chr12 25230341 25264676 G T 0.35 0.12829 0.55504 INS 0 Nonsense_Mutation 81 3 1 TCGA-VQ-A8DL-01 KRT14 chr17 41127319 41595371 G T NA 0.01 1 INS 0 Nonsense_Mutation 285 14 1 TCGA-VQ-A8DL-01 KRT16 chr17 41607304 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 EIF1 chr17 41607646 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 GAST chr17 41606826 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 HAP1 chr17 41600470 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 JUP chr17 41605366 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 P3H4 chr17 41605040 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DL-01 FKBP10 chr17 41609160 41829439 G T NA 0.01 1 INS 0 Nonsense_Mutation 99 14 1 TCGA-VQ-A8DT-01 A1BG chr19 58338890 58370362 G T 1 1 1 INS 1 Missense_Mutation 17 5 0 TCGA-VQ-A8DT-01 ZNF497 chr19 58338947 58370362 G T 1 1 1 INS 1 Missense_Mutation 17 5 0 TCGA-VQ-A8DU-01 AC108925.1 chr8 127605120 127915818 G T 1 1 1 INS 1 Missense_Mutation 221 4 0 TCGA-VQ-A8DU-01 MYC chr8 127604961 127915818 G T 1 1 1 INS 1 Missense_Mutation 221 4 0 TCGA-VQ-A8DU-01 GAST chr17 41718419 41998820 G T 1 1 1 INS 1 Missense_Mutation 142 4 0 TCGA-VQ-A8DU-01 HAP1 chr17 41712265 41998820 G T 1 1 1 INS 1 Missense_Mutation 142 4 0 TCGA-VQ-A8DU-01 JUP chr17 41718651 41998820 G T 1 1 1 INS 1 Missense_Mutation 142 4 0 TCGA-VQ-A8DU-01 P3H4 chr17 41710679 41998820 G T 1 1 1 INS 1 Missense_Mutation 142 4 0 TCGA-VQ-A8DU-01 FKBP10 chr17 41718417 41998820 G T 1 1 1 INS 1 Missense_Mutation 142 4 0 TCGA-VQ-A8DV-01 AC108925.1 chr8 127444192 127689251 G T 1 1 1 INS 1 Missense_Mutation 212 8 0 TCGA-VQ-A8DV-01 HGH1 chr8 144126581 144182542 G T 1 1 1 INS 1 Missense_Mutation 11 5 0 TCGA-VQ-A8DV-01 RBL1 chr20 37018221 37170697 G T 1 1 1 INS 1 Missense_Mutation 174 7 0 TCGA-VQ-A8DZ-01 MIEN1 chr17 39708939 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 92 14 1 TCGA-VQ-A8DZ-01 GRB7 chr17 39708198 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 92 14 1 TCGA-VQ-A8E0-01 RNH1 chr11 457478 733813 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-A8E0-01 HRAS chr11 463433 733813 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-A8E0-01 LRRC56 chr11 461627 733813 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-A8E0-01 LMNTD2 chr11 464729 733813 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-A8E0-01 RASSF7 chr11 463124 733813 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-A8E2-01 AC108925.1 chr8 127552394 127717358 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A8E2-01 MYC chr8 127722888 127977842 G T NA 0.01 1 INS 0 Nonsense_Mutation 135 14 1 TCGA-VQ-A8E2-01 C19orf12 chr19 29629097 30011781 G T NA 0.01 1 INS 0 Nonsense_Mutation 267 14 1 TCGA-VQ-A8E2-01 CCNE1 chr19 29625353 30011781 G T NA 0.01 1 INS 0 Nonsense_Mutation 267 14 1 TCGA-VQ-A8E7-01 NEUROD2 chr17 39325438 39633179 G T 0.68 0.39949 0.93184 INS 0 Nonsense_Mutation 128 6 1 TCGA-VQ-A8E7-01 KRT14 chr17 41481950 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 KRT16 chr17 41475852 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 EIF1 chr17 41476437 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 GAST chr17 41477791 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 HAP1 chr17 41482312 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 JUP chr17 41477799 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 P3H4 chr17 41480404 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8E7-01 FKBP10 chr17 41483067 41843195 G T NA 0.01 1 INS 0 Nonsense_Mutation 165 14 1 TCGA-VQ-A8P3-01 STK25 chr2 241432471 241537572 G T 1 1 1 INS 1 Missense_Mutation 74 5 0 TCGA-VQ-A8P3-01 GRINA chr8 143937123 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 SPATC1 chr8 143940957 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 OPLAH chr8 143939203 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 EXOSC4 chr8 143944955 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 GPAA1 chr8 143937562 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 CYC1 chr8 143938807 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 SHARPIN chr8 143938602 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 MAF1 chr8 143944346 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 KIAA1875 chr8 143943097 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 HGH1 chr8 143938208 144182542 G T 1 1 1 INS 1 Missense_Mutation 61 4 0 TCGA-VQ-A8P3-01 RNH1 chr11 462122 840034 G T 1 1 1 INS 1 Missense_Mutation 85 5 0 TCGA-VQ-A8P3-01 HRAS chr11 461168 840034 G T 1 1 1 INS 1 Missense_Mutation 85 5 0 TCGA-VQ-A8P3-01 LRRC56 chr11 464091 840034 G T 1 1 1 INS 1 Missense_Mutation 85 5 0 TCGA-VQ-A8P3-01 LMNTD2 chr11 458517 840034 G T 1 1 1 INS 1 Missense_Mutation 85 5 0 TCGA-VQ-A8P3-01 RASSF7 chr11 458588 840034 G T 1 1 1 INS 1 Missense_Mutation 85 5 0 TCGA-VQ-A8P3-01 TMEM121 chr14 105489022 105533894 G T 1 1 1 INS 1 Missense_Mutation 14 5 0 TCGA-VQ-A8P5-01 GRINA chr8 143964398 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 SPATC1 chr8 143967548 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 OPLAH chr8 143967367 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 EXOSC4 chr8 143969734 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 GPAA1 chr8 143967025 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 CYC1 chr8 143971351 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 SHARPIN chr8 143969442 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 MAF1 chr8 143969216 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 KIAA1875 chr8 143972001 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 HGH1 chr8 143968530 144182542 G T 1 1 1 INS 1 Missense_Mutation 59 6 0 TCGA-VQ-A8P5-01 LYRM5 chr12 25057865 25380046 G T 0.59 0.14324 0.94723 INS 1 Missense_Mutation 334 9 0 TCGA-VQ-A8P5-01 KRAS chr12 25062248 25380046 G T 0.59 0.14324 0.94723 INS 1 Missense_Mutation 334 9 0 TCGA-VQ-A8P5-01 NEUROD2 chr17 39463977 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 PPP1R1B chr17 39466320 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 STARD3 chr17 39464913 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 TCAP chr17 39466538 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 PNMT chr17 39466596 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 PGAP3 chr17 39472926 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 ERBB2 chr17 39468705 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 MIEN1 chr17 39466464 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8P5-01 GRB7 chr17 39471915 39855805 G T NA 0.01 1 INS 0 Nonsense_Mutation 197 14 1 TCGA-VQ-A8PE-01 RNH1 chr11 460205 589246 G T 1 1 1 INS 1 Missense_Mutation 28 3 0 TCGA-VQ-A8PE-01 HRAS chr11 458817 589246 G T 1 1 1 INS 1 Missense_Mutation 28 3 0 TCGA-VQ-A8PE-01 LRRC56 chr11 456847 589246 G T 1 1 1 INS 1 Missense_Mutation 28 3 0 TCGA-VQ-A8PE-01 LMNTD2 chr11 464944 589246 G T 1 1 1 INS 1 Missense_Mutation 28 3 0 TCGA-VQ-A8PE-01 RASSF7 chr11 462157 589246 G T 1 1 1 INS 1 Missense_Mutation 28 3 0 TCGA-VQ-A8PE-01 PPP1R1B chr17 39632481 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 STARD3 chr17 39632069 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 TCAP chr17 39628059 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 PNMT chr17 39625354 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 PGAP3 chr17 39629595 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 ERBB2 chr17 39629078 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 MIEN1 chr17 39623798 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 GRB7 chr17 39633230 39814112 G T 1 1 1 INS 1 Missense_Mutation 125 6 0 TCGA-VQ-A8PE-01 CCNE1 chr19 29810697 30124468 G T 1 1 1 INS 1 Missense_Mutation 232 8 0 TCGA-VQ-A8PE-01 URI1 chr19 29810618 30124468 G T 1 1 1 INS 1 Missense_Mutation 232 8 0 TCGA-VQ-A8PJ-01 NEUROD2 chr17 39490846 39610186 G T NA 0.01 1 INS 0 Nonsense_Mutation 60 14 1 TCGA-VQ-A8PJ-01 PPP1R1B chr17 39628551 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 STARD3 chr17 39623385 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 TCAP chr17 39624855 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 PNMT chr17 39628534 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 PGAP3 chr17 39630504 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 ERBB2 chr17 39624380 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 MIEN1 chr17 39626746 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PJ-01 GRB7 chr17 39628609 39804778 G T NA 0.01 1 INS 0 Nonsense_Mutation 119 14 1 TCGA-VQ-A8PK-01 LYRM5 chr12 25184404 25249135 G T 0.27 0.03673 0.61253 INS 0 Nonsense_Mutation 121 11 1 TCGA-VQ-A8PK-01 KRAS chr12 25183834 25249135 G T 0.27 0.03673 0.61253 INS 0 Nonsense_Mutation 121 11 1 TCGA-VQ-A8PK-01 C19orf12 chr19 29625591 29809086 G T 0.34 0.05494 0.67695 INS 0 Nonsense_Mutation 112 10 1 TCGA-VQ-A8PK-01 CCNE1 chr19 29818940 30037623 G T 0.08 0.01742 0.43731 INS 0 Nonsense_Mutation 173 13 1 TCGA-VQ-A8PK-01 URI1 chr19 29810493 30037623 G T 0.08 0.01742 0.43731 INS 0 Nonsense_Mutation 173 13 1 TCGA-VQ-A8PM-01 AC108925.1 chr8 127437503 127774588 G T 1 1 1 INS 1 Missense_Mutation 274 6 0 TCGA-VQ-A8PM-01 MYC chr8 127440011 127774588 G T 1 1 1 INS 1 Missense_Mutation 274 6 0 TCGA-VQ-A8PM-01 RNH1 chr11 462692 564127 G T 1 1 1 INS 1 Missense_Mutation 21 5 0 TCGA-VQ-A8PM-01 HRAS chr11 463237 564127 G T 1 1 1 INS 1 Missense_Mutation 21 5 0 TCGA-VQ-A8PM-01 LRRC56 chr11 458855 564127 G T 1 1 1 INS 1 Missense_Mutation 21 5 0 TCGA-VQ-A8PM-01 LMNTD2 chr11 463545 564127 G T 1 1 1 INS 1 Missense_Mutation 21 5 0 TCGA-VQ-A8PM-01 RASSF7 chr11 462508 564127 G T 1 1 1 INS 1 Missense_Mutation 21 5 0 TCGA-VQ-A8PM-01 NEUROD2 chr17 39494956 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 PPP1R1B chr17 39487976 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 STARD3 chr17 39495613 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 TCAP chr17 39490550 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 PNMT chr17 39490648 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 PGAP3 chr17 39489219 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 ERBB2 chr17 39489470 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 MIEN1 chr17 39497335 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 GRB7 chr17 39495690 39809616 G T 1 1 1 INS 1 Missense_Mutation 181 8 0 TCGA-VQ-A8PM-01 C19orf12 chr19 29655675 30011559 G T NA 0.01 1 INS 0 Nonsense_Mutation 252 14 1 TCGA-VQ-A8PM-01 CCNE1 chr19 29655050 30011559 G T NA 0.01 1 INS 0 Nonsense_Mutation 252 14 1 TCGA-VQ-A8PO-01 AC108925.1 chr8 127328223 127802519 G T 1 1 1 INS 1 Missense_Mutation 370 6 0 TCGA-VQ-A8PO-01 MYC chr8 127329681 127802519 G T 1 1 1 INS 1 Missense_Mutation 370 6 0 TCGA-VQ-A8PT-01 NEUROD2 chr17 39498416 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 PPP1R1B chr17 39500721 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 STARD3 chr17 39502375 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 TCAP chr17 39501401 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 PNMT chr17 39498428 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 PGAP3 chr17 39501809 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 ERBB2 chr17 39497083 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 MIEN1 chr17 39501117 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PT-01 GRB7 chr17 39497146 39814112 G T 1 1 1 INS 1 Missense_Mutation 183 6 0 TCGA-VQ-A8PU-01 TMEM121 chr14 105045769 105533894 G T 1 1 1 INS 1 Missense_Mutation 140 4 0 TCGA-VQ-A8PY-01 LYRM5 chr12 25175539 25217605 G T NA 0.01 1 INS 0 Nonsense_Mutation 42 14 1 TCGA-VQ-A8PY-01 KRAS chr12 25222578 25249135 G T NA 0.01 1 INS 0 Nonsense_Mutation 78 14 1 TCGA-VQ-A8PY-01 RBL1 chr20 36907558 37119070 G T 1 1 1 INS 1 Missense_Mutation 196 5 0 TCGA-VQ-A91A-01 EXOSC4 chr8 144077144 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 GPAA1 chr8 144068324 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 CYC1 chr8 144069850 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 SHARPIN chr8 144074939 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 MAF1 chr8 144067659 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 KIAA1875 chr8 144071273 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91A-01 HGH1 chr8 144071646 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 7 0 TCGA-VQ-A91K-01 LMNTD2 chr11 551219 606294 G T 0.31 0.07137 0.55321 INS 1 Missense_Mutation 12 3 0 TCGA-VQ-A91K-01 RASSF7 chr11 550726 606294 G T 0.31 0.07137 0.55321 INS 1 Missense_Mutation 12 3 0 TCGA-VQ-A91N-01 LYRM5 chr12 25174132 25249127 G T NA 0.01 1 INS 0 Nonsense_Mutation 121 14 1 TCGA-VQ-A91N-01 KRAS chr12 25173048 25249127 G T NA 0.01 1 INS 0 Nonsense_Mutation 121 14 1 TCGA-VQ-A91N-01 C19orf12 chr19 29475291 29815520 G T NA 0.01 1 INS 0 Nonsense_Mutation 250 14 1 TCGA-VQ-A91N-01 URI1 chr19 29821379 30248090 G T NA 0.01 1 INS 0 Nonsense_Mutation 284 14 1 TCGA-VQ-A91S-01 GOLGA6L2 chr15 23438484 23632460 G T 1 1 1 INS 1 Missense_Mutation 149 4 0 TCGA-VQ-A91S-01 NEUROD2 chr17 39595168 39623268 G T 0.67 0.08478 0.97373 INS 0 Nonsense_Mutation 9 12 1 TCGA-VQ-A91S-01 STARD3 chr17 39649792 39659826 G T 0.27 0.03138 0.93 INS 0 Nonsense_Mutation 5 12 1 TCGA-VQ-A91S-01 PNMT chr17 39668147 39671617 G T 1 1 1 INS 1 Missense_Mutation 4 4 0 TCGA-VQ-A91S-01 ERBB2 chr17 39681546 39767120 G T 0.8 0.29587 0.98288 INS 0 Nonsense_Mutation 87 14 1 TCGA-VQ-A91S-01 MIEN1 chr17 39674090 39767120 G T 0.8 0.29587 0.98288 INS 0 Nonsense_Mutation 87 14 1 TCGA-VQ-A91S-01 GRB7 chr17 39677015 39767120 G T 0.8 0.29587 0.98288 INS 0 Nonsense_Mutation 87 14 1 TCGA-VQ-A91S-01 EIF1 chr17 41681862 41739810 G T 0.86 0.26084 0.98589 INS 0 Nonsense_Mutation 30 14 1 TCGA-VQ-A91S-01 GAST chr17 41685220 41739810 G T 0.86 0.26084 0.98589 INS 0 Nonsense_Mutation 30 14 1 TCGA-VQ-A91S-01 HAP1 chr17 41683706 41739810 G T 0.86 0.26084 0.98589 INS 0 Nonsense_Mutation 30 14 1 TCGA-VQ-A91S-01 P3H4 chr17 41776562 41885423 G T NA 0.01 1 INS 0 Nonsense_Mutation 57 14 1 TCGA-VQ-A91S-01 FKBP10 chr17 41769728 41885423 G T NA 0.01 1 INS 0 Nonsense_Mutation 57 14 1 TCGA-VQ-A91V-01 LYRM5 chr12 25160276 25239275 G T 0.04 0.01946 0.65709 INS 0 Nonsense_Mutation 111 12 1 TCGA-VQ-A91X-01 STARD3 chr17 39638274 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 32 14 1 TCGA-VQ-A91X-01 TCAP chr17 39642662 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 32 14 1 TCGA-VQ-A91X-01 PNMT chr17 39637964 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 32 14 1 TCGA-VQ-A91X-01 PGAP3 chr17 39637452 39698254 G T NA 0.01 1 INS 0 Nonsense_Mutation 32 14 1 TCGA-VQ-A91X-01 KRT14 chr17 41583164 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 KRT16 chr17 41580681 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 EIF1 chr17 41586267 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 GAST chr17 41586157 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 HAP1 chr17 41579586 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 JUP chr17 41582412 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 P3H4 chr17 41581572 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 FKBP10 chr17 41581582 41932666 G T NA 0.01 1 INS 0 Nonsense_Mutation 163 14 1 TCGA-VQ-A91X-01 RBL1 chr20 37043180 37094427 G T 1 1 1 INS 1 Missense_Mutation 96 7 0 TCGA-VQ-A91Y-01 A1BG chr19 58034824 58370362 G T 1 1 1 INS 1 Missense_Mutation 203 5 0 TCGA-VQ-A91Y-01 ZNF497 chr19 58038577 58370362 G T 1 1 1 INS 1 Missense_Mutation 203 5 0 TCGA-VQ-A91Z-01 RBL1 chr20 37034710 37133091 G T 0.71 0.51603 0.8936 INS 0 Nonsense_Mutation 126 5 1 TCGA-VQ-A925-01 KRT14 chr17 41437036 41609462 G T 1 1 1 INS 1 Missense_Mutation 129 5 0 TCGA-VQ-A925-01 A1BG chr19 57968629 58370362 G T 1 1 1 INS 1 Missense_Mutation 241 4 0 TCGA-VQ-A925-01 ZNF497 chr19 57971772 58370362 G T 1 1 1 INS 1 Missense_Mutation 241 4 0 TCGA-VQ-A928-01 FARP2 chr2 241335046 241537572 G T 1 1 1 INS 1 Missense_Mutation 116 6 0 TCGA-VQ-A928-01 STK25 chr2 241338589 241537572 G T 1 1 1 INS 1 Missense_Mutation 116 6 0 TCGA-VQ-A928-01 GRINA chr8 143560027 143993705 G T 1 1 1 INS 1 Missense_Mutation 83 6 0 TCGA-VQ-A928-01 SPATC1 chr8 143997253 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 OPLAH chr8 143998353 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 EXOSC4 chr8 144003064 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 GPAA1 chr8 144004853 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 CYC1 chr8 143996525 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 SHARPIN chr8 143996532 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 MAF1 chr8 144003919 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 KIAA1875 chr8 143999736 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 HGH1 chr8 143995479 144182542 G T 1 1 1 INS 1 Missense_Mutation 53 7 0 TCGA-VQ-A928-01 TMEM121 chr14 105404627 105533894 G T 1 1 1 INS 1 Missense_Mutation 33 6 0 TCGA-VQ-A94O-01 MYC chr8 127725472 127891905 G T 1 1 1 INS 1 Missense_Mutation 84 5 0 TCGA-VQ-A94O-01 GOLGA6L2 chr15 23444563 23606711 G T 1 1 1 INS 1 Missense_Mutation 130 5 0 TCGA-VQ-A94O-01 NEUROD2 chr17 39473668 39692292 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-VQ-A94O-01 PPP1R1B chr17 39474640 39692292 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-VQ-A94O-01 STARD3 chr17 39472832 39692292 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-VQ-A94O-01 TCAP chr17 39470515 39692292 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-VQ-A94O-01 PNMT chr17 39471915 39692292 G T 1 1 1 INS 1 Missense_Mutation 93 5 0 TCGA-VQ-A94O-01 KRT14 chr17 41413158 41681512 G T 1 1 1 INS 1 Missense_Mutation 175 5 0 TCGA-VQ-A94O-01 KRT16 chr17 41410369 41681512 G T 1 1 1 INS 1 Missense_Mutation 175 5 0 TCGA-VQ-A94O-01 C19orf12 chr19 29674487 29809086 G T NA 0.01 1 INS 0 Nonsense_Mutation 90 14 1 TCGA-VQ-A94O-01 CCNE1 chr19 29816848 29870928 G T NA 0.01 1 INS 0 Nonsense_Mutation 71 14 1 TCGA-VQ-A94O-01 URI1 chr19 29935738 29978188 G T NA 0.01 1 INS 0 Nonsense_Mutation 34 14 1 TCGA-VQ-A94R-01 RBL1 chr20 36694356 37112086 G T 1 1 1 INS 1 Missense_Mutation 280 4 0 TCGA-VQ-A94T-01 RBL1 chr20 37026557 37102518 G T 1 1 1 INS 1 Missense_Mutation 135 4 0 TCGA-VQ-AA64-01 RBL1 chr20 37045023 37094427 G T 1 1 1 INS 1 Missense_Mutation 98 5 0 TCGA-VQ-AA68-01 FARP2 chr2 241301977 241537572 G T 1 1 1 INS 1 Missense_Mutation 135 5 0 TCGA-VQ-AA68-01 STK25 chr2 241302816 241537572 G T 1 1 1 INS 1 Missense_Mutation 135 5 0 TCGA-VQ-AA68-01 GRINA chr8 143919205 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 SPATC1 chr8 143913383 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 OPLAH chr8 143920804 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 EXOSC4 chr8 143922054 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 GPAA1 chr8 143920904 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 CYC1 chr8 143917242 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 SHARPIN chr8 143920350 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 MAF1 chr8 143915792 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 KIAA1875 chr8 143916673 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA68-01 HGH1 chr8 143919357 144182542 G T 1 1 1 INS 1 Missense_Mutation 63 6 0 TCGA-VQ-AA6B-01 GOLGA6L2 chr15 23446161 23519300 G T 1 1 1 INS 1 Missense_Mutation 65 3 0 TCGA-VQ-AA6B-01 NEUROD2 chr17 39193230 39681288 G T 0.56 0.08622 0.95054 INS 0 Nonsense_Mutation 201 13 1 TCGA-VQ-AA6B-01 PPP1R1B chr17 39192128 39681288 G T 0.56 0.08622 0.95054 INS 0 Nonsense_Mutation 201 13 1 TCGA-VQ-AA6B-01 STARD3 chr17 39193525 39681288 G T 0.56 0.08622 0.95054 INS 0 Nonsense_Mutation 201 13 1 TCGA-VQ-AA6B-01 TCAP chr17 39190918 39681288 G T 0.56 0.08622 0.95054 INS 0 Nonsense_Mutation 201 13 1 TCGA-VQ-AA6B-01 PNMT chr17 39188676 39681288 G T 0.56 0.08622 0.95054 INS 0 Nonsense_Mutation 201 13 1 TCGA-VQ-AA6B-01 JUP chr17 41747599 41793264 G T NA 0.01 1 INS 0 Nonsense_Mutation 23 14 1 TCGA-VQ-AA6B-01 P3H4 chr17 41799157 41823336 G T NA 0.01 1 INS 0 Nonsense_Mutation 14 14 1 TCGA-VQ-AA6B-01 FKBP10 chr17 41797467 41823336 G T NA 0.01 1 INS 0 Nonsense_Mutation 14 14 1 TCGA-VQ-AA6B-01 RBL1 chr20 37040520 37094427 G T 0.24 0.02875 0.83042 INS 1 Missense_Mutation 97 7 0 TCGA-VQ-AA6D-01 GRINA chr8 143921478 144059740 G T NA 0.01 1 INS 0 Nonsense_Mutation 25 14 1 TCGA-VQ-AA6D-01 SPATC1 chr8 143918042 144059740 G T NA 0.01 1 INS 0 Nonsense_Mutation 25 14 1 TCGA-VQ-AA6D-01 EXOSC4 chr8 144074585 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 GPAA1 chr8 144074905 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 CYC1 chr8 144068948 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 SHARPIN chr8 144073407 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 MAF1 chr8 144070877 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 KIAA1875 chr8 144070985 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 HGH1 chr8 144076463 144182542 G T 1 1 1 INS 1 Missense_Mutation 39 9 0 TCGA-VQ-AA6D-01 TMEM121 chr14 105172201 105533894 G T 1 1 1 INS 1 Missense_Mutation 97 6 0 TCGA-VQ-AA6D-01 GOLGA6L2 chr15 23437584 23554137 G T 1 1 1 INS 1 Missense_Mutation 89 6 0 TCGA-VQ-AA6D-01 NEUROD2 chr17 39560501 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 PPP1R1B chr17 39559455 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 STARD3 chr17 39559514 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 TCAP chr17 39560831 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 PNMT chr17 39562200 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 PGAP3 chr17 39554386 39720645 G T NA 0.01 1 INS 0 Nonsense_Mutation 100 14 1 TCGA-VQ-AA6D-01 MIEN1 chr17 39734983 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 47 14 1 TCGA-VQ-AA6D-01 GRB7 chr17 39725801 39814112 G T NA 0.01 1 INS 0 Nonsense_Mutation 47 14 1 TCGA-VQ-AA6D-01 KRT14 chr17 41578171 41686993 G T 1 1 1 INS 1 Missense_Mutation 46 10 0 TCGA-VQ-AA6D-01 KRT16 chr17 41578339 41686993 G T 1 1 1 INS 1 Missense_Mutation 46 10 0 TCGA-VQ-AA6F-01 RNH1 chr11 464522 883230 G T 1 1 1 INS 1 Missense_Mutation 92 5 0 TCGA-VQ-AA6F-01 HRAS chr11 465973 883230 G T 1 1 1 INS 1 Missense_Mutation 92 5 0 TCGA-VQ-AA6F-01 LRRC56 chr11 458464 883230 G T 1 1 1 INS 1 Missense_Mutation 92 5 0 TCGA-VQ-AA6F-01 LMNTD2 chr11 465591 883230 G T 1 1 1 INS 1 Missense_Mutation 92 5 0 TCGA-VQ-AA6F-01 RASSF7 chr11 456061 883230 G T 1 1 1 INS 1 Missense_Mutation 92 5 0 TCGA-VQ-AA6G-01 NEUROD2 chr17 39501281 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 PPP1R1B chr17 39498552 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 STARD3 chr17 39502265 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 TCAP chr17 39496767 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 PNMT chr17 39501059 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 PGAP3 chr17 39503099 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 ERBB2 chr17 39497218 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 MIEN1 chr17 39502449 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6G-01 GRB7 chr17 39497447 39813730 G T NA 0.01 1 INS 0 Nonsense_Mutation 181 14 1 TCGA-VQ-AA6I-01 A1BG chr19 58169357 58370362 G T 0.39 0.03584 0.96605 INS 0 Nonsense_Mutation 115 7 1 TCGA-VQ-AA6I-01 ZNF497 chr19 58172412 58370362 G T 0.39 0.03584 0.96605 INS 0 Nonsense_Mutation 115 7 1 TCGA-VQ-AA6J-01 FARP2 chr2 241382473 241537572 G T 1 1 1 INS 1 Missense_Mutation 99 4 0 TCGA-VQ-AA6J-01 STK25 chr2 241385977 241537572 G T 1 1 1 INS 1 Missense_Mutation 99 4 0 TCGA-ZQ-A9CR-01 FARP2 chr2 241150720 241537572 G T 1 1 1 INS 1 Missense_Mutation 217 5 0 TCGA-ZQ-A9CR-01 STK25 chr2 241148373 241537572 G T 1 1 1 INS 1 Missense_Mutation 217 5 0 TCGA-ZQ-A9CR-01 AC108925.1 chr8 127351422 127806155 G T 0.69 0.06191 0.97553 INS 1 Missense_Mutation 354 14 0 TCGA-ZQ-A9CR-01 MYC chr8 127354511 127806155 G T 0.69 0.06191 0.97553 INS 1 Missense_Mutation 354 14 0 TCGA-ZQ-A9CR-01 JUP chr17 41759990 41827392 G T 1 1 1 INS 1 Missense_Mutation 32 7 0 TCGA-ZQ-A9CR-01 P3H4 chr17 41751834 41827392 G T 1 1 1 INS 1 Missense_Mutation 32 7 0 TCGA-ZQ-A9CR-01 FKBP10 chr17 41757777 41827392 G T 1 1 1 INS 1 Missense_Mutation 32 7 0